LOC110533022 (LOC106611372)



Basic Information


Item Value
gene id LOC110533022
gene name LOC106611372
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55472740 ~ 55482782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_002474920.2
AAGGAAGAGGAAGAAATCAAAGAGCTCGTGGACAAGGGGCTCGtcagagaggtgggcatgggccccatcaagGTGGTAAAAGAGATAACAGATCCAGTCTACCTCAAAGCAGCTGCCTTGGATCCGGATTTTTCTCTGATGTGGGTGGAGCACCATGTGCTGGTCAAGGAGGAGGTCAAGGAGGAGGTGGCACAAAGAGTGAAAGAACTGATTCTGCAAGATGCTACAGGGACTGAGCAAGCTGTGCCTCTTGTTGATGAGGAAGAGTGAGAGGACCATAGTCTTGGACAAGAAGAAGGGCTGTTTGCAGCATGCTGTAAGAGGCAGAAGAAAGCTGTTGGGACCACTCCAGCACTACAGCTAAGTCACTACCTTGACAAATGCGAAGGACAGAATGCCCTCTTGTTCTGGGCAATGAACAGGAAGGCTCTTCCTTCACTGTCCCGAGTGGCCATCAGGGTCTTGGCAGTGCCTGCCTCCAGTGTTCCGGTGGAGCATGTCTTCATCCATGGTGGCATCATACTGCGGCCTCATCGTGCACAAATGACTGACAGACTTTTATCGAATTTGGTCTTTTGCAAATGCAATGCATCATAGGGCCCTGAGATAAGAGAAAAAATTCAACTGTTTatgcattatacacacacacatgtagtcTCCATGTTCAGGTTTTATCTCCCGTCTTTGGGATCTATATTTTTTTCTCAGACATTCATTGTTCAAATTGTAGGCCTCAGTTCAGTGTCAGTTGTTTAGATGTACCTTTAAATAAATGATTGTAACTTTATGGCAGGATTTTAGGTGTCTAgagtatatctggagagagagatagagggagagagagcactacaatattttgtttttgttgtcatattgatgtctttct
>TU933393
GGAAGAGGAAGAAATCAAAGAGCTCGTGGACAAGGGGCTCGtcagagaggtgggcatgggccccatcaagGTGGTAAAAGAGATAACAGATCCAGTCTACCTCAAAGCAGCTGCCTTGGATCCGGATTTTTCTCTGATGTGGGTGGAGCACCATGTGCTGGTCAAGGAGGAGGTCAAGGAGGAGGTGGCACAAAGAGTGAAAGAACTGATTCTGCAAGATGCTACAGGGACTGAGCAAGCTGTGCCTCTTGTTGATGAGGAAGAGTGAGAGGACCATAGTCTTGGACAAGAAGAAGGGCTGTTTGCAGCATGCTGTAAGAGGCAGAAGAAAGCTGTTGGGACCACTCCAGCACTACAGCTAAGTCACTACCTTGACAAATGCGAAGGACAGAATGCCCTCTTGTTCTGGGCAATGAACAGGAAGGCTCTTCCTTCACTGTCCCGAGTGGCCATCAGGGTCTTGGCAGTGCCTGCCTCCAGTGTTCCGGTGGAGCATGTCTTCATCCATGGTGGCATCATACTGCGGCCTCATCGTGCACAAATGACTGACAGACTTTTATCGAATTTGGTCTTTTGCAAATGCAATGCATCATAGGGCCCTGAGATAAGAGAAAAAATTCAACTGTTTatgcattatacacacacacatgtagtcTCCATGTTCAGGTTTTATCTCCCGTCTTTGGGATCTATATTTTTTTCTCAGACATTCATTGTTCAAATTGTAGGCCTCAGTTCAGTGTCAGTTGTTTAGATGTACCTTTAAATAAATGATTGTAACTTTATGGCAGGATTTTAGGTGTCTAgagtatatctggagagagagatagagggagagagagcactacaatattttgtttttgttgtcatattgatgtctttctcatggc

Function


NR:

description
uncharacterized protein LOC110505897

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_002474920.2 False 886 mRNA 0.46 3 55472740 55482776
TU933393 True 890 lncRNA 0.46 3 55472742 55482782

Neighbor


gene id symbol gene type direction distance location
LOC110532410 LOC106572358 coding upstream 47174 55419323 ~ 55425566 (+)
LOC110532409 LOC106572359 coding upstream 62441 55375175 ~ 55410299 (+)
LOC110532408 ctbl1 coding upstream 100153 55328112 ~ 55372587 (+)
LOC110532406 LOC106572360 coding upstream 248368 55217606 ~ 55224372 (+)
LOC110532404 LOC106572363 coding upstream 265375 55192353 ~ 55207365 (+)
dlgap4a dlgap4 coding downstream 48257 55531033 ~ 55647541 (+)
LOC110532413 LOC106572354 coding downstream 165993 55648769 ~ 55683707 (+)
LOC110532415 LOC106572353 coding downstream 202478 55685254 ~ 55691748 (+)
LOC110532416 scube3 coding downstream 220809 55703585 ~ 55827053 (+)
LOC110531209 NA coding downstream 344655 55827431 ~ 55829584 (+)
G820838 NA non-coding upstream 4839 55467699 ~ 55467901 (+)
G820837 NA non-coding upstream 5975 55465963 ~ 55466765 (+)
G820831 NA non-coding upstream 15870 55456579 ~ 55456870 (+)
G820771 NA non-coding upstream 146314 55326214 ~ 55326426 (+)
G820769 NA non-coding upstream 147688 55324832 ~ 55325052 (+)
G820937 NA non-coding downstream 134551 55617327 ~ 55617607 (+)
G821275 LOC106583515 non-coding downstream 354647 55837423 ~ 55844030 (+)
G821250 NA non-coding downstream 366846 55849622 ~ 55853214 (+)
G821355 NA non-coding downstream 474592 55957368 ~ 55957642 (+)
G820665 NA other upstream 238942 55233258 ~ 55233798 (+)
G819897 NA other upstream 745364 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 2745220 52692676 ~ 52734929 (+)
LOC110532349 LOC106591969 other upstream 3147100 52323001 ~ 52325924 (+)
G815767 casz1 other upstream 4126246 51345372 ~ 51346494 (+)
G820944 NA other downstream 214864 55697640 ~ 55697978 (+)
G821363 uhrf1bp1 other downstream 491266 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 578930 56061706 ~ 56063655 (+)
LOC110532426 NA other downstream 636343 56119005 ~ 56124213 (+)

Expression



Co-expression Network