taf11 (taf11)


Basic Information

Item Value
gene id taf11
gene name taf11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55957961 ~ 55959870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616308.2
TTAAGCCGGAAGTTGATTTCAGCAGCAGCTTCCGGCCTGAATGTTCTCCATGTTGTTTTTTTGATGATGCTTCAAAACATTTATCTTTCGGGCTTTAGCTAATATTTTGCTAAAGTAACGGTTTTATTTTTTTGATCAATAAACGTGGTACGCAGAATTCCAAGAGGATAGTATGTCACGAGGATAGTAAGTGAGCGTATTTGGCTGTGAAGTTGTTTGCTAGCAGTTAGCTAACTTGTTGATGTTTCTCGAGTCAAACATTTCCGTTTTGACTGTTGCATAATTATACATTATATTGGTGTGGTAAGATTTCGAATGAGTTATGGCAGACCCAGCTAGGATAAAGACTGAATCCAACTCTGAGAATTCATTGGCTGCTAGAGAAAGCCCTAAAACCGAAGACACTGAAGAAGTGCCTGTGACCTCGGATGCAGACACCGAATCAAAAGATTCCTCCTCACAATCACTCAAACGCGAACACAAACAGGACTCTGTTGCTGGAGATGATGAGGATGAGGGAACCTCAGATCAACCAGCttccaaaaaactaaaagtgGAGCCTGAGAAGAAAAAGGAGAAGAGGCAAAAGGTTGACGAGGATGAGATACAGAAGATGCAGGTTTTGGTCTCATCCTTCTCTGAGGAGCAGCTTAACCGCTATGAGATGTATAGACGCTCTGCTTTCCCCAAAGCTGCCATCAAGAGGGTAAGACCTTTAGGGACATATGTAATTATATTTAATCAGAATCAGTTCCATTTTAATATTGTATTTCAATATATGCTTTTCTTTACCTGGTTGATACAGCTGATACAGTCCATTACAGGATCCTCAGTCTCTCAAAATGTGGTTATCGCCATGTCTGGTATTTCCAAGGTCTTCGCTGGAGAAATAGTGGAGGAAGCTCTGGATGTGTGTGAGAAGTGGGGGGACACACCTCCCCTGCAGCCCAAGCACATGAGGGAGGCTGTCAGGAGGCTAAAGAGCAGAGAGCAGATCCCCAACACCAAGCACAAGAACATCCTCTTTCACTGAGCCACTCATGCCCTGCTGATTATAGGTAGATCCAAGCGGTGATGTATTCACCTTTCAGATGGTGGCATCTTACACACCACTTTCATGTTCATTCTCTATTCCAATGTCCATTGGTTTGGCCATGAAGGCAAGTGCAGTATACTGTTGTCAGGAACTCCAAAGTCAACCTTTGTTATATTTGAGGGCATTTCTTGGATATACTAATGGTCAATAATAAAATGACCACAGCATCAAGGTTTGTGCCAATgttctaaaatacattttatttgagatGTTGGTGAAGCATGGAAGTATCCAAAACTGGTCACTTCTAGTACTTCCTGGGAAAATGTTGTTTCAGTTAAACCATTTTATTAGACCTCAGGTCAATCATTTTGGGCCATATTTCAATAAATAAAAGGACACATTTGTTAATGAGTTATCTTCTCTTGTTAGATGAAGACCAGTAAAGTCTCGTAAGATGagcttgtgtgtgcatgtgtctaaCTTTAAACCTGCTCACTGGCCAATAAATGCATAATACAACCA
>XM_021616309.2
AGCCGGAAGTTGATTTCAGCAGCAGCTTCCGGCCTGAATGTTCTCCATGTTGTTTTTTTGATGATGCTTCAAAACATTTATCTTTCGGGCTTTAGCTAATATTTTGCTAAAGTAACGGTTTTATTTTTTTGATCAATAAACGTGGTACGCAGAATTCCAAGAGGATAGTATGTCACGAGGATAGTAAGTGAGCGTATTTGGCTGTGAAGTTGTTTGCTAGCAGTTAGCTAACTTGTTGATGTTTCTCGAGTCAAACATTTCCGTTTTGACTGTTGCATAATTATACATTATATTGGTGTGGTAAGATTTCGAATGAGTTATGGCAGACCCAGCTAGGATAAAGACTGAATCCAACTCTGAGAATTCATTGGCTGCTAGAGAAAGCCCTAAAACCGAAGACACTGAAGAAGTGCCTGTGACCTCGGATGCAGACACCGAATCAAAAGATTCCTCCTCACAATCACTCAAACGCGAACACAAACAGGACTCTGTTGCTGGAGATGATGAGGATGAGGGAACCTCAGATCAACCAGCttccaaaaaactaaaagtgGAGCCTGAGAAGAAAAAGGAGAAGAGGCAAAAGGTTGACGAGGATGAGATACAGAAGATGCAGGTTTTGGTCTCATCCTTCTCTGAGGAGCAGCTTAACCGCTATGAGATGTATAGACGCTCTGCTTTCCCCAAAGCTGCCATCAAGAGGCTGATACAGTCCATTACAGGATCCTCAGTCTCTCAAAATGTGGTTATCGCCATGTCTGGTATTTCCAAGGTCTTCGCTGGAGAAATAGTGGAGGAAGCTCTGGATGTGTGTGAGAAGTGGGGGGACACACCTCCCCTGCAGCCCAAGCACATGAGGGAGGCTGTCAGGAGGCTAAAGAGCAGAGAGCAGATCCCCAACACCAAGCACAAGAACATCCTCTTTCACTGAGCCACTCATGCCCTGCTGATTATAGGTAGATCCAAGCGGTGATGTATTCACCTTTCAGATGGTGGCATCTTACACACCACTTTCATGTTCATTCTCTATTCCAATGTCCATTGGTTTGGCCATGAAGGCAAGTGCAGTATACTGTTGTCAGGAACTCCAAAGTCAACCTTTGTTATATTTGAGGGCATTTCTTGGATATACTAATGGTCAATAATAAAATGACCACAGCATCAAGGTTTGTGCCAATgttctaaaatacattttatttgagatGTTGGTGAAGCATGGAAGTATCCAAAACTGGTCACTTCTAGTACTTCCTGGGAAAATGTTGTTTCAGTTAAACCATTTTATTAGACCTCAGGTCAATCATTTTGGGCCATATTTCAATAAATAAAAGGACACATTTGTTAATGAGTTATCTTCTCTTGTTAGATGAAGACCAGTAAAGTCTCGTAAGATGagcttgtgtgtgcatgtgtctaaCTTTAAACCTGCTCACTGGCCAATAAATGCATAATACAACCA

Function

symbol description
taf11 Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to several human genes including TAF11 (TATA-box binding protein associated factor 11).

NR:

description
transcription initiation factor TFIID subunit 11 isoform X2

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006413 translational initiation biological_process
GO:0005634 nucleus cellular_component
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03135 TAF11; transcription initiation factor TFIID subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616308.2 False 1561 mRNA 0.41 4 55957961 55959870
XM_021616309.2 True 1459 mRNA 0.42 5 55957964 55959870

Neighbor

gene id symbol gene type direction distance location
LOC110531209 NA coding upstream 128377 55827431 ~ 55829584 (+)
LOC110532416 scube3 coding upstream 130908 55703585 ~ 55827053 (+)
LOC110532415 LOC106572353 coding upstream 266213 55685254 ~ 55691748 (+)
LOC110532413 LOC106572354 coding upstream 274254 55648769 ~ 55683707 (+)
dlgap4a dlgap4 coding upstream 310420 55531033 ~ 55647541 (+)
LOC110532421 cssa15h6orf106 coding downstream 68667 56028537 ~ 56035153 (+)
LOC110532424 spdef coding downstream 82962 56042832 ~ 56051988 (+)
LOC110532428 NA coding downstream 143695 56103492 ~ 56112044 (+)
LOC110532426 NA coding downstream 159135 56119005 ~ 56124213 (+)
LOC110532427 LOC106572343 coding downstream 165884 56125754 ~ 56132936 (+)
G821355 NA non-coding upstream 319 55957368 ~ 55957642 (+)
G821250 NA non-coding upstream 104747 55849622 ~ 55853214 (+)
G821275 LOC106583515 non-coding upstream 113931 55837423 ~ 55844030 (+)
G820937 NA non-coding upstream 340354 55617327 ~ 55617607 (+)
G821356 NA non-coding downstream 4092 55963962 ~ 55964172 (+)
G821357 uhrf1bp1 non-coding downstream 4386 55964256 ~ 55966429 (+)
G821364 NA non-coding downstream 15657 55975527 ~ 55975898 (+)
G821369 NA non-coding downstream 21042 55980912 ~ 55981198 (+)
G821371 NA non-coding downstream 25247 55985117 ~ 55985321 (+)
G820944 NA other upstream 259983 55697640 ~ 55697978 (+)
G820665 NA other upstream 724163 55233258 ~ 55233798 (+)
G819897 NA other upstream 1230585 54726871 ~ 54727376 (+)
LOC110532368 LOC106572016 other upstream 3230441 52692676 ~ 52734929 (+)
G821363 uhrf1bp1 other downstream 14172 55974042 ~ 55975316 (+)
G821409 pacsin1 other downstream 101836 56061706 ~ 56063655 (+)
G822283 NA other downstream 612737 56572607 ~ 56572957 (+)

Expression


Co-expression Network