LOC110532421 (cssa15h6orf106)


Basic Information

Item Value
gene id LOC110532421
gene name cssa15h6orf106
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56028537 ~ 56035153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988387.1
cgaacgcacccacgTGTTAGAAAGTATTGTATCTCGCAAACTagatagcttgggtgcttgactgctttgtgaggtcagaacgctcgccCTGAGAGCGAAACGATCTGAATTTACGAACaaacaatctgacaacgctctaaATTTCCGAACGGCCCAGAGCGCACTCCATGGTGGATTTATGAACGCCAACTGTGGCCTAGTTCAAGAAGGTCGGCCTGAGCTAGGCGCTGCGTGGATTCGATTACAAAATACAAGGGAAATCCACGATGGAGGGCATGGATTTGGACCTGGACCCGGAGTTAATGCAAAAATTTAGCTGCATGGGCACTACCGATAAGGACATACTCATAGCCGAGTTTCAGAGAATGCTTGGGTTTCAACTGAACCCCGCTGGATGCGCCTTCTTCTTGGACATGACCAATTGGAACTTACAAGCAGCCATCGGAGCCTACTATGACTTTGAAAGCCCCAACATCAACGCACCATGCATGTCTTTTGTTGGGGATGTGACGATCGGGGAGGGGGAGTCTGTGCCCCCTGACACGCCCTTCACTAAGACGTGGAGGATACAGAACACAGGAGCAGAGTCTTGGCCCCCTGGGGTATGTCTGAAGTATGTTGGAGGGGACCAGTTTGGTCATGTGAACATGGTGATGGTGCGCTCATTAAACCCCCAGGAGATGGCTGATGTCAGCGTACAGATGCGCAGCTCCCTTTCCCCTGGCATGTACCAGGGCCAGTGGAGGATGTGCACAGCCACCGGACTCTTCTATGGGGATGTGATCTGGGTAATCGTCAGCGTGGAGGTGGGAGGCCTCCTTGGCGTGACGCAGCAGATGTCCTCCTTCCAGGCCGAGTTCAACACCCAGCCTGCCCGCAACGTGGAGGGAGACTACAACCCCTTCGCCTCGCCACAGAAACACGCCGGTGCCCACGATAACAGTCACCGTGACGACAGCGGCCTCAAGGACCCCGCGGACGTCTGGGAGGGTGGCCCGGACCGAATGCAGCAAGAGCAAAATGGACTGTCACACAACTCTGTGAATATAGCAACAAACGGGCTCCAAAGCAACCTAGTGACTTACAGTCAGGGTATTCACGAACCCTATCCTTTTGGGCAGTCTTAAAACATGGGAAACATCGTCACATCCAGGCAGCACTGTGTTCCTGGATCCACAACATCTATTGTGGGAGGAGGCTTTACTTGTGGCTGGTAGAGTATCCTGAGATTCATACAAACACTTATGCAAAGTTCCCCCTCCACTTTACGCAACACAAACGGAAACCAGAAGACAAAGCTGCTCTGTTCTCCCAGCATACGACTCAACCAACAAGATCCCACATCCATTGAATGCATGTGTGAATGTTAAGTTAAAAATGAGTGCTACAAATCTTTTTTTAAAGAGATGAGATACAAGTTTTTTTTTCTGGTCTTTATTTTGAGTTATTTAGTTGTCATGTCCGAATGCTGTTGAGACTACAGTGATGAAAGGAGCAGTGTGTGTTTGCGTCGGAGTGTGCATGTGAGTGGGTATGTGTGTTTGCTTGGTTTATGCAACCTGAAAGAGACAGACTAGGGAGGAAAAGCCATTTATTTTGCGTACTGATCCTCTAGTTCCTAagctgacttaaaaaaaaaaaaaagtaacctCTCTTCTTTTCATACTTTTTAAAATCCTAATTTCACAGTGTATACTTTTTAGGGACAGGAGAATAATTCAGCAAATTTAGCAGCCTGATAAGCATGTATTGTTTTGGATGTTTTTCTGGTAACAACAAAGGAAGAACAGCTTATTCACCTGCAAATCCCATTTGCTGCAGCTTCACTTTTGATTGTTGGTTGGTTCTGTTACTCTGAAGTtgagctacagtatatccatccacTAGAGGGAGGTCTTTATCAAAATTGCAGTTTCCCACTTACCAATTGGTGAAAAAAAGAAACATTAACTAACATTTACTCATGTCAGGATCAATACTTGGAAAGTAGATTATATCACCACACTGTAGGTTCAATTTGTTTTAATAGGGCTTCATCATTTTGTTCTGTGAGATTGCAAAAGTTCACATGTTGCAAAGCAGTGTCGTTTCTTGGTTTTGTCATTTTGAGTTGAATGTATTTGCTGAATGTAGAGCTATGTTGTTTTGAAGCATTTTTGTTTTATCTGCCCAAAGATCTTATACATTTGCCTTGAAGACACAGCTTCATTTAAGGTTTTCAGATTTTCTAACTCTTTTTGTTCATTATTATTTATTCCAAAGCCCAGGAAAATGAATCTGTTCTTGAGAGAAAATTCTGAAATTACAATGACAGTGTCCTCTTGTTCAGACAATGTTAAACCCAACCATTTATTCAAATATACAGGCCTTCATTTTGTTAGTCCCTCTAAAGACTATATTTTAAAGAATGTTTTAAATGACTTGCACTAACTGGCTAATCTCTATGCACTGAGTAGTTTGGCCTCCAGCCCAAACGTGAGATATTTTACTATTGCTCCTTATGATGCCAGTTGTCTTTATGCTTCAGTTTCATGCCTGGGACACTACATGCCTGGTAGGCTACATGTGTGGTCCTCCTCTGTTTTGTTATCTTTCCATCTGCAACCAGGGATTGACTTTGAAAACCTGGCTTGCAAGATTACATTTTTCAAATATTTACTATTTACTTCATTGCATTGGGGCAGTTGGGCAACAAACGGCAGCAAGCTCATTTGCACCCAGGGATGATTGACTGTACTTTGTCAATGTGACAGCAGTGTCATTGTCCAGAACCACACCTCCTGTCATAGGCAGATTAGCTATGTTACAGTTTTCCCCTGAAGGCATTTGGTAATATCTTAGATCAATTGCATGTGCTCTTCAAATTTATGAAGCAAGTTAATGACAAATGTTTCTCCTCGTCGTAACAGGTATACACTGCCCATTAATCTCCTTGGTTGTGTCTCAAATTgccccctattccctttatagtttcCTTACTATATAGGGTACCGTTTATGACACACCCCACATTCGTATGTTTTTTGTTTACAGTCGGATGTCACATATTGAGTGATTcattgctttttttttagggggtaTGATAGATTTTTTTTCTGTGAAGTTTTCAGGGGTTAGAATGGTGAATGGATGACTTTTGGAATTCTACAGCAGAACATTTATGAGACAGAGTCAGCAAAGATATGAAAGCATTTTTCCTGTATGTTTGAACGAACGTTTGTATGATTAAATTATCACTGAAAACAAAA

Function

NR:

description
uncharacterized protein C6orf106 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988387.1 True 3248 mRNA 0.43 6 56028537 56035153

Neighbor

gene id symbol gene type direction distance location
taf11 taf11 coding upstream 68667 55957961 ~ 55959870 (+)
LOC110531209 NA coding upstream 198953 55827431 ~ 55829584 (+)
LOC110532416 scube3 coding upstream 201484 55703585 ~ 55827053 (+)
LOC110532415 LOC106572353 coding upstream 336789 55685254 ~ 55691748 (+)
LOC110532413 LOC106572354 coding upstream 344830 55648769 ~ 55683707 (+)
LOC110532424 spdef coding downstream 7679 56042832 ~ 56051988 (+)
LOC110532428 NA coding downstream 68412 56103492 ~ 56112044 (+)
LOC110532426 NA coding downstream 83852 56119005 ~ 56124213 (+)
LOC110532427 LOC106572343 coding downstream 90601 56125754 ~ 56132936 (+)
LOC110531212 LOC106567287 coding downstream 211557 56246710 ~ 56463547 (+)
G821380 NA non-coding upstream 760 55998969 ~ 56027777 (+)
G821393 NA non-coding upstream 8966 56018624 ~ 56019571 (+)
G821377 NA non-coding upstream 31799 55996516 ~ 55996738 (+)
G821371 NA non-coding upstream 43216 55985117 ~ 55985321 (+)
G821369 NA non-coding upstream 47339 55980912 ~ 55981198 (+)
G821408 pacsin1 non-coding downstream 17050 56052203 ~ 56055971 (+)
G821433 NA non-coding downstream 52450 56087603 ~ 56088983 (+)
G821459 NA non-coding downstream 109663 56144816 ~ 56145130 (+)
G821464 NA non-coding downstream 116033 56151186 ~ 56151527 (+)
G821363 uhrf1bp1 other upstream 53221 55974042 ~ 55975316 (+)
G820944 NA other upstream 330559 55697640 ~ 55697978 (+)
dlgap4a dlgap4 other upstream 413136 55531033 ~ 55647541 (+)
G820665 NA other upstream 794739 55233258 ~ 55233798 (+)
G819897 NA other upstream 1301161 54726871 ~ 54727376 (+)
G821409 pacsin1 other downstream 26553 56061706 ~ 56063655 (+)
G822283 NA other downstream 537454 56572607 ~ 56572957 (+)
G822404 NA other downstream 727472 56762625 ~ 56763540 (+)

Expression


Co-expression Network