LOC110532424 (spdef)


Basic Information

Item Value
gene id LOC110532424
gene name spdef
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56042832 ~ 56051988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616317.2
AATATGACTTGAAGTCACATTGAAGCAAGTATTCCTATGCGCACGCTTGCTTGGGCACACACCCTCCTCTGGCATGAATTTGTCAGTATTGTGAGAACTTTATTACAGATAAGGCTGGCCGGCAATGACCAATAACCTCGCCTTACACTCAACCAATCAAGCCAGCTAAGGACTCCCTCACAACTGTCAGAGCATCAGACAGAGCTTCGACCACCTGAAAGTGTTTGAGACACGGCTCCAGGCATCCTAATGACCCTCTCTTTGACACATCACTGCCTCATGACCTGAGGGCCACCATCATCTGTTACAACCTGACGACTGCAACAGCCAACCAGAGAGGACCACTGAGGTAAAGCCTACATAGACTCATCCACCACCAGAGGAGCTTGGGACTTGAGCTTCTGACTAACCGGTATCTGTATTGTGACTCACTGTGGAACTCTTCAGCACTTTGACAAGAAGACAGTCCTTTGACTGACTCAAAGACAGATATCCAGAGTGACAGTCTATCAGCTCAGACAGCATCAGCAGCCTACACCTCTGACCAGCACTGTTGAAGCTATGGGGAGTCCAGGCTGTGACCGCGAGGGGAGCACAGTGCCCCTTCCCCTGATGAGTTTCAGTGACTACTCCCACAGTGGGTCTGCCCTAAGGGcctgggagaaggaggaggacacCAAGCCGCCCCGGGGACTGATAAGTGTGCCTAAACACACCGCTCCTGAACGCAGTCTGCAAGGGGTCTTCCTGCCCTGCTTCGACATGCTCCTCACTGAAAACAGCTCGTGGCTGTTGAAGAAGTCTGACGTAGCGCCCCCTGTGCTCCCCTGTAAGGCCCTGGAGCAGTGCCCTGTCATCAACAGCCAGGGCCTGGGGCTCCCCTCTGGGCTAGAGGGACAGGTTGAGGAACGCTGTCTGGAGCAGGTTCAGAGCATGGTGTTGGGAGAGGTACTGAAGGACATAGAGACTGCCTGCATACTGCTCAACATTACTCCAGACCCCATGGAGTGGAATTGTGGGAACGTCCAGAAGTGGCTGCTGTGGACAGAGCACCTGTACAGACTACCCCAGGTGGGCAAGGTGTTCCAGGAGCTCAGTGGAAAGGATCTGTGCTCCATGACAGAGGAGGACTTTAGGCAGCGCTCAATGCAGTGTGGAGACCTGCTATACGCTCATCTGGACATCTGGAGATCAGCTGCATGCATGAAGGAGCCCTGCACACCAGGCGATAACAGGCTACATGGTGCTGAGGAGTCGTGGCCAAAGGCAGACTCCTCCTGCTCAGGCCAGCCCATCCACCTGTGGCAGTTTCTTAGAGAGCTGCTCCTCAAGCCGCACAACTACGGACACTGCATCCGCTGGCTCAACAAGGAGAAAGGAATCTTCAAAATAGAAGACTCGGCTTATGTGTCCAGGTTATGGGGCATCAGGAAGAACCGTCCAGCTATGAACTATGACAAGCTGAGTCGCTCTATCCGACAGTACTACAAGAAGGGCATCATCCGTAAGCCTGATGTGTCCCAGAGACTGGTCTACCAGTTTGTCCACCCTGTATGAAGCTGTGGGGCAGCCAGCCAGAAGAGAAGATTAGTGTTGATGATGACTGGAGACCACTATCTAGCCAAACAGGTTTTGGCAAAAGGATTGTTTTAGCTCCAGCAACGCAGTGTATAGACTGCTTCCTGCATTGTGCATTCCTGCCTAATTCATATATTATTAGGTCAACTGATTGGATATGGggttttgttattttttattgccACATTGCATTAGATATGCAAAGTTTTACATTTCAAATATTTTCAATACTAATTGTCCAATATTTCATTTTCACAAAGGTCAAAGTCTGTATTCTTTTTCTCTGATTGTGACTTCACATTACTGTAACCACCAGTAGTTACTTTTTAAGGTGGTTCCTCTTTCATTACCATTACACAATGTCCCTCGGATATAAAAGCATTCGTACAGTTCATGGCATTTTGTTACATGCCGGGTGAATATTGGAGTGAATGTGTGCAATGTGTTTACTACTGATCTGTAGTGGTATTCCCATGTGTGGGGCTATTCATGAGTCACAAGTAACCACAGCTGTTTAATCACACAGATCTGATGTTTACGTTGGTAATTTCATTTAAGTATAGAGAAATTATTTGACTCCGGGGCCCGTTCACTGGCGGAAGAATCAAGTCTAATAGGAATTTGTGAATACAGTAAACTACTGTAATAGAAGCATTTCAATATCATTGCCACATTTCAAGTGCTAGAATCCATATGTAGAGACAAACACCAGTGATagaagccctgtttatacctggttctaacatgctgcctttgtcctgatcttatccacattctgattgtgcccacatttttagacaAGTGAAGACGATTAAAAGAAACATTATGATCAAATCTTATAAGTGTAAACAGGCAAGATCAAGTCAAGATCATGACGAGGGACGCGTGTTAACggcaggtataaacagggctagaGATTAGTGACTGAATCCATACTGTACACATGTTAGAACATAATATTGAATATTTATAATGAGTGTGAGCAAGATG

Function

symbol description
spdef Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of apoptotic process. Predicted to be part of chromatin. Predicted to be active in nucleus. Biomarker of ovarian cancer.

NR:

description
SAM pointed domain-containing Ets transcription factor-like

GO: NA

KEGG:

id description
K09442 SPDEF; SAM pointed domain-containing ETS transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616317.2 True 2568 mRNA 0.47 5 56042832 56051988

Neighbor

gene id symbol gene type direction distance location
LOC110532421 cssa15h6orf106 coding upstream 7679 56028537 ~ 56035153 (+)
taf11 taf11 coding upstream 82962 55957961 ~ 55959870 (+)
LOC110531209 NA coding upstream 213248 55827431 ~ 55829584 (+)
LOC110532416 scube3 coding upstream 215779 55703585 ~ 55827053 (+)
LOC110532415 LOC106572353 coding upstream 351084 55685254 ~ 55691748 (+)
LOC110532428 NA coding downstream 51577 56103492 ~ 56112044 (+)
LOC110532426 NA coding downstream 67017 56119005 ~ 56124213 (+)
LOC110532427 LOC106572343 coding downstream 73766 56125754 ~ 56132936 (+)
LOC110531212 LOC106567287 coding downstream 194722 56246710 ~ 56463547 (+)
LOC110532433 LOC106572420 coding downstream 538703 56590691 ~ 56641983 (+)
G821380 NA non-coding upstream 15055 55998969 ~ 56027777 (+)
G821393 NA non-coding upstream 23261 56018624 ~ 56019571 (+)
G821377 NA non-coding upstream 46094 55996516 ~ 55996738 (+)
G821371 NA non-coding upstream 57511 55985117 ~ 55985321 (+)
G821369 NA non-coding upstream 61634 55980912 ~ 55981198 (+)
G821408 pacsin1 non-coding downstream 215 56052203 ~ 56055971 (+)
G821433 NA non-coding downstream 35615 56087603 ~ 56088983 (+)
G821459 NA non-coding downstream 92828 56144816 ~ 56145130 (+)
G821464 NA non-coding downstream 99198 56151186 ~ 56151527 (+)
G821363 uhrf1bp1 other upstream 67516 55974042 ~ 55975316 (+)
G820944 NA other upstream 344854 55697640 ~ 55697978 (+)
dlgap4a dlgap4 other upstream 427431 55531033 ~ 55647541 (+)
G820665 NA other upstream 809034 55233258 ~ 55233798 (+)
G819897 NA other upstream 1315456 54726871 ~ 54727376 (+)
G821409 pacsin1 other downstream 9718 56061706 ~ 56063655 (+)
G822283 NA other downstream 520619 56572607 ~ 56572957 (+)
G822404 NA other downstream 710637 56762625 ~ 56763540 (+)

Expression


Co-expression Network