LOC110532428


Basic Information

Item Value
gene id LOC110532428
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56103492 ~ 56112044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532428
CATCATGAGACATGGCGTTGTCATAACTGAAAGTGGTGTCTAAATTGTGCTTCTTGAAACAGtctaacatttatttttaaatgttatttttttggcCCTTATTATGACTGTTTCTACGAATACCTAAGCGTTAGCGGCACTACTTATAACTATGCATGGCGGCTGCTAGTTAGTTGGCTTGCCCTGCTGTATTCGTTCCACTGATACAATAATACAATGTAGCATAGTCTTGGCTTTATAACTAGCTCATTGTAACTTTATCGCCTATATCCCGGTGTATGCCTTAAACATTGTGTCCGATGTTTTTAAAAAAGTGTAGTGCTACACTGCCCCCAGAGGGACCCAGGCATTATGTAGTTAGCTAACTGTTAGTTGGGTAACGTTAGCAAAGCGAGTAGTTAACTAGCTAGTTGTAACTACCAGTTAGCTAACTAGGCATACTTGCCATGATTTAGAGACACTGACAAGTGTTCAACCTTTATACCATATTTGGTTAATCTCTTCTATGTGGTCCATTTTAGGTTAGAAGTGTTTGCTGCCGGCTAGTTAGTGTTAGTTAGCTCACTACTAGCGGACTGAACTCACTCATGGTGAAGGAAGTTCCCGATGACTCAAAGACCAGGCAGCAGGCTTTGTGGAATCTTCTGACTACATGATTCACCCAAGATGCTGATGCCCAAGAAGAATTGTATAGCCATCTACGAACTCCTCTTCAAGGAGGGAGTGATGATGGCAAAAAAAGGATGTGCATCTGGCTAAGCACCCGGAGCTGGCCGATAACAATGTGCCCAACATTCACGTTGTGAAGGCCATGCAGGGCATCCAGTACCTGAGGGACTTCCTGCATCTGCCCCCAGAGATTGTTCCTGCCACTCTGCGTCGCCAGATGCGTCCTGAGACCGCTAGGCCCAGGCCTAAAGGTATGGAGGGTGAGAGAGCTGAGAGGCCAGCCAAGTTTAACCGTGAAGGAGGAGACCGAGACAACTAGACGTTCTGTTGCACCACCTGGTGTAGACAAGAAGGCTGAAGCAGGTGCTGGTGCAGATGAGTTCCAATTCAGAGGCGGTTTTGGACGTGGCAGAGGACAGCAACCACCACAGGAGTAAAGCAGACTGTTCTTGTACAGCATAATAAAAGGTGATTGGT
>TU934058
CTCGGCTCCGGTCTCAAAACACGCATTCAAGATGCTGATGCCCAAGAAGAATTGTATAGCCATCTACGAACTCCTCTTCAAGGAGGGAGTGATGATGGCAAAAAAAGGATGTGCATCTGGCTAAGCACCCGGAGCTGGCCGATAACAATGTGCCCAACATTCACGTTGTGAAGGCCATGCAGGTATGGAGGGTGAGAGAGCTGAGAGGCCAGCCAAGTTTAACCGTGAAGGAGGAGACCGAGACAACTAGACGTTCTGTTGCACCACCTGGTGTAGACAAGAAGGCTGAAGCAGGTGCTGGTGCAGATGAGTTCCAATTCAGAGGCGGTTTTGGACGTGGCAGAGGACAGCAACCACCACAGGAGTAAAGCA

Function

NR:

description
PREDICTED: 40S ribosomal protein S10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532428 False 1146 mRNA 0.46 6 56103565 56112044
TU934058 True 372 lncRNA 0.52 5 56103492 56112008

Neighbor

gene id symbol gene type direction distance location
LOC110532424 spdef coding upstream 51577 56042832 ~ 56051988 (+)
LOC110532421 cssa15h6orf106 coding upstream 68412 56028537 ~ 56035153 (+)
taf11 taf11 coding upstream 143695 55957961 ~ 55959870 (+)
LOC110531209 NA coding upstream 273981 55827431 ~ 55829584 (+)
LOC110532416 scube3 coding upstream 276512 55703585 ~ 55827053 (+)
LOC110532426 NA coding downstream 6961 56119005 ~ 56124213 (+)
LOC110532427 LOC106572343 coding downstream 13710 56125754 ~ 56132936 (+)
LOC110531212 LOC106567287 coding downstream 134666 56246710 ~ 56463547 (+)
LOC110532433 LOC106572420 coding downstream 478647 56590691 ~ 56641983 (+)
LOC110532435 LOC106572422 coding downstream 533736 56645780 ~ 56652084 (+)
G821433 NA non-coding upstream 14582 56087603 ~ 56088983 (+)
G821408 pacsin1 non-coding upstream 47594 56052203 ~ 56055971 (+)
G821380 NA non-coding upstream 75788 55998969 ~ 56027777 (+)
G821393 NA non-coding upstream 83994 56018624 ~ 56019571 (+)
G821377 NA non-coding upstream 106827 55996516 ~ 55996738 (+)
G821459 NA non-coding downstream 32772 56144816 ~ 56145130 (+)
G821464 NA non-coding downstream 39142 56151186 ~ 56151527 (+)
G821466 NA non-coding downstream 40483 56152527 ~ 56152755 (+)
G821476 NA non-coding downstream 50930 56162974 ~ 56163181 (+)
G821477 NA non-coding downstream 51377 56163421 ~ 56163755 (+)
G821409 pacsin1 other upstream 39910 56061706 ~ 56063655 (+)
G821363 uhrf1bp1 other upstream 128249 55974042 ~ 55975316 (+)
G820944 NA other upstream 405587 55697640 ~ 55697978 (+)
dlgap4a dlgap4 other upstream 488164 55531033 ~ 55647541 (+)
G820665 NA other upstream 869767 55233258 ~ 55233798 (+)
G822283 NA other downstream 460563 56572607 ~ 56572957 (+)
G822404 NA other downstream 650581 56762625 ~ 56763540 (+)
LOC110532462 LOC106572392 other downstream 1230357 57342345 ~ 57958962 (+)

Expression


Co-expression Network