LOC110532426


Basic Information

Item Value
gene id LOC110532426
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56119005 ~ 56124213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616321.2
CCCTTTTCCGTTCgctccactgtgtctgtgggTGACTTCATTGTCTTTGCCATGGATTGCTGGAACGGAGCCAGACCAAATCACACACACGTGACCGGTCTTTCTGGGAATGTTCCTGGAAAGACGTGCGCTCGATCAACAATTAAAACTAGAGAAGGAAACAttgtaaaatgtttttaaaaaacaacTAATCGCCCAGACCGATAGAGCGTCAAATCGTGCATTTAGACGGCAGGCAGCTCGTGGGGAACATTGTGGATGATTTGTTGATTATATTCCTGAAATGTTCTGATTATCCAGCTGGAAACAAAACAAGTGCTCCAGAACAGATCTTTCCATCGTTGTGTCCGCTCAAGGCTTCAATCATGAATTTCGGAGGACATGACCTGTTTAACCAGTGCAGTGCGTGTCTGAAATAGCAGACAGTGACTCCTACCAGACCTTGGGTCAACAAACAAATTGAGAACCATTTGGACGCTCAAATCCTCAAGTGTTCCACTGCTGTCATGCACAATGATTATACCGATCAGTGCCCCTGACAAATCCCTCAACGCAATCCGGCTAAAGGACTGCAAGCTGGAGTCATGTCAAAGTGCGTCAAGACTAAGAGAGGATGTCGCACTGTTGCAAAGAGCCATGTCTCATCTTCGGGAGTCAGTGTTCTTCAGGCTGGTACTGGGGCCCCCTGACAGCTACTCAGGCTAAACAAGTTCTGAATAAAGCTCCAGAGGGTATTTTCCTGTTGCGGGACATCTCCTACCAGGGCTACCTCCTCACCCTGTCTGTGAAGACCAGCCTTGGCCCCACACACCTCCACATAGAGCATGGCACTGGCATGTTTGGCTTCGACTCTGTGATTGTGGCATGGCCACGAATGCGGAGGGTTGAGGGGGCTGTAGATCTGGTGCAGCACTATGCCTTGACTTATAAGCTTCTGGTCAGTTAAAAGGAGAGACTCAGGGCTCAAAAGGAAACAGGAGGAGCAACCCATCCGCCCCCAGTAGAGAGAACTCTGCAGCTCAAGCTCATCTGCCCCCTCCATAAAGTTTTCCCTAGTCTCCAGCACTTTTGCCGCGTCACTATTAACCAGCATTCTCGCTGTCACCAGGACTTACCCTTGCCAGGGTGGCTACATGACCTCTTGCTGGAATACCCTTTTGTGCTGTAGGAAATGCTCATCTGATGTTTTGATATTCCTGAATTAGACTTTAATTGGACATCAATGATCAATGTCCTAATGTTGTGTTGAAAATTGGCTCTCAGCTGTATACATGCTGGTTCCTAGATGATCATTTAGCAAATCCCTACGTGTATTTTTACATTTATACTTGAGTCCTCtatcagatgcttttatccagagcgacttacaggagcaattagggttaagtgccctgTTCTAGGGatcattgacagatttttcacctagtcggctctgggatttgaactagcagccttttggttactggcccaacgctgttAACTGCTATGTATCAGAGGCAAAATTCACCTACCTATCACCATCTTAGGTTAGTTAAACTAAATTAACAATTGAGAGTACTGAAATggaatgctgaaataaataacaGTTAGAAGAACATGACAAAGGGGAATAGATAAAAGCTTTGTTATTGTTCTATAAACAGTATTAAAGAACGATTATTGTATAATGGACCACATTAATTAAAAACACTATACAGTATTCAACCAATTCACCTGATGTACCATGGCTTTTATTATGGGGGATTTTGTTATGCTGAtgtgaaaagggctttataaataaattggatTGAATTTGAT
>TU934051
CCTGGAAAGACGTGCGCTCGATCAACAATTAAAACTAGAGAAGGAAACAttgtaaaatgtttttaaaaaacaacTAATCGCCCAGACCGATAGAGCGTCAAATCGTGCATTTAGACGGCAGGCAGCTCGTGGGGAACATTGTGGATGATTTGTTGATTATATTCCTGAAATGTTCTGATTATCCAGCTGGAAACAAAACAAGTGCTCCAGAACAGATCTTTCCATCGTTGTGTCCGCTCAAGGCTTCAATCATGAATTTCGGAGGACATGACCTGTTTAACCAGTGCAGTGCGTGTCTGAAATAGCAGACAGTGACTCCTACCAGACCTTGGGTCAACAAACAAATTGAGAACCATTTGGACGCTCAAATCCTCAAGTGTTCCACTGCTGTCATGCACAATGATTATACCGATCAGTGCCCCTGACAAATCCCTCAACGCAATCCGGCTAAAGGACTGCAAGCTGGAGTCATGTCAAAGTGCGTCAAGACTAAGAGAGGATGTCGCACTGTTGCAAAGAGCCATGTCTCATCTTCGGGAGTCAGTGTTCTTCAGGCTGGTACTGGGGCCCCCTGACAGCTACTCAGGCTAAACAAGTTCTGAATAAAGCTCCAGAGGGTATTTTCCTGTTGCGGGACATCTCCTACCAGGGCTACCTCCTCACCCTGTCTGTGAAGACCAGCCTTGGCCCCACACACCTCCACATAGAGCATGGCACTGGCATGTTTGGCTTCGACTCTGTGATTGTGGCATGGCCACGAATGCGGAGGGTTGAGGGGGCTGTAGATCTGGTGCAGCACTATGCCTTGACTTATAAGCTTCTGGTCAGTTAAAAGGAGAGACTCAGGGCTCAAAAGGAAACAGGAGGAGCAACCCATCCGCCCCCAGTAGAGAGAACTCTGCAGCTCAAGCTCATCTGCCCCCTCCATAAAGTTTTCCCTAGTCTCCAGCACTTTTGCCGCGTCACTATTAACCAGCATTCTCGCTGTCACCAGGACTTACCCTTGCCAGGGTGGCTACATGACCTCTTGCTGGAATACCCTTTTGTGCTGTAGGAAATGCTCATCTGATGTTTTGATATTCCTGAATTAGACTTTAATTGGACATCAATGATCAATGTCCTAATGTTGTGTTGAAAATTGGCTCTCAGCTGTATACATGCTGGTTCCTAGATGATCATTTAGCAAATCCCTACGTGTATTTTTACATTTATACTTGAGTCCTCtatcagatgcttttatccagagcgacttacaggagcaattagggttaagtgccctgTTCTAGGGatcattgacagatttttcacctagtcggctctgggatttgaactagcagccttttggttactggcccaacgctgttAACTGCTATGTATCAGAGGCAAAATTCACCTACCTATCACCATCTTAGGTTAGTTAAACTAAATTAACAATTGAGAGTACTGAAATggaatgctgaaataaataacaGTTAGAAGAACATGACAAAGGGGAATAGATAAAAGCTTTGTTATTGTTCTATAAACAGTATTAAAGAACGATTATTGTATAATGGACCACATTAATTAAAAACACTATACAGTATTCAACCAATTCACCTGATGTACCATGGCTTTTATTATGGGGGATTTTGTTATGCTGAtgtgaaaagggc

Function

NR:

description
cytokine-inducible SH2-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616321.2 False 1797 mRNA 0.44 3 56119005 56124213
TU934051 True 1655 TUCP 0.44 3 56119119 56124185

Neighbor

gene id symbol gene type direction distance location
LOC110532428 NA coding upstream 6961 56103492 ~ 56112044 (+)
LOC110532424 spdef coding upstream 67017 56042832 ~ 56051988 (+)
LOC110532421 cssa15h6orf106 coding upstream 83852 56028537 ~ 56035153 (+)
taf11 taf11 coding upstream 159135 55957961 ~ 55959870 (+)
LOC110531209 NA coding upstream 289421 55827431 ~ 55829584 (+)
LOC110532427 LOC106572343 coding downstream 1541 56125754 ~ 56132936 (+)
LOC110531212 LOC106567287 coding downstream 122497 56246710 ~ 56463547 (+)
LOC110532433 LOC106572420 coding downstream 466478 56590691 ~ 56641983 (+)
LOC110532435 LOC106572422 coding downstream 521567 56645780 ~ 56652084 (+)
LOC110532437 LOC106572423 coding downstream 537544 56661757 ~ 56708327 (+)
G821433 NA non-coding upstream 30022 56087603 ~ 56088983 (+)
G821408 pacsin1 non-coding upstream 63034 56052203 ~ 56055971 (+)
G821380 NA non-coding upstream 91228 55998969 ~ 56027777 (+)
G821393 NA non-coding upstream 99434 56018624 ~ 56019571 (+)
G821459 NA non-coding downstream 20603 56144816 ~ 56145130 (+)
G821464 NA non-coding downstream 26973 56151186 ~ 56151527 (+)
G821466 NA non-coding downstream 28314 56152527 ~ 56152755 (+)
G821476 NA non-coding downstream 38761 56162974 ~ 56163181 (+)
G821477 NA non-coding downstream 39208 56163421 ~ 56163755 (+)
G821409 pacsin1 other upstream 55350 56061706 ~ 56063655 (+)
G821363 uhrf1bp1 other upstream 143689 55974042 ~ 55975316 (+)
G820944 NA other upstream 421027 55697640 ~ 55697978 (+)
dlgap4a dlgap4 other upstream 503604 55531033 ~ 55647541 (+)
G820665 NA other upstream 885207 55233258 ~ 55233798 (+)
G822283 NA other downstream 448394 56572607 ~ 56572957 (+)
G822404 NA other downstream 638412 56762625 ~ 56763540 (+)
LOC110532462 LOC106572392 other downstream 1218188 57342345 ~ 57958962 (+)
G823373 NA other downstream 1904406 58028619 ~ 58028857 (+)

Expression


Co-expression Network