Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110532429 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 56133004 ~ 56143428 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: high mobility group protein HMG-I/HMG-Y-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036988393.1 | False | 2676 | mRNA | 0.43 | 5 | 56133124 | 56143202 |
| XM_036988392.1 | False | 2632 | mRNA | 0.43 | 5 | 56133124 | 56143405 |
| TU934516 | False | 2718 | TUCP | 0.42 | 5 | 56133004 | 56143371 |
| TU934517 | False | 2568 | TUCP | 0.43 | 5 | 56133154 | 56143371 |
| TU934518 | True | 2625 | TUCP | 0.43 | 5 | 56133154 | 56143428 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532425 | nudt3 | coding | downstream | 14360 | 56112212 ~ 56118764 (-) |
| LOC110532422 | pacsin1 | coding | downstream | 33264 | 56052180 ~ 56099860 (-) |
| LOC110532419 | uhrf1bp1 | coding | downstream | 108201 | 55960333 ~ 56024923 (-) |
| LOC110531211 | LOC106572349 | coding | downstream | 176461 | 55849607 ~ 55956663 (-) |
| LOC110532417 | LOC106572351 | coding | downstream | 289066 | 55833535 ~ 55844058 (-) |
| LOC110532434 | LOC106572420 | coding | upstream | 496818 | 56640223 ~ 56641036 (-) |
| LOC110532436 | LOC106567284 | coding | upstream | 565148 | 56708553 ~ 56809173 (-) |
| LOC110532438 | LOC106572424 | coding | upstream | 666586 | 56809991 ~ 56812100 (-) |
| LOC110531213 | NA | coding | upstream | 671040 | 56814445 ~ 56815434 (-) |
| LOC110532440 | p4r2a | coding | upstream | 676477 | 56819882 ~ 56827075 (-) |
| G821913 | NA | non-coding | downstream | 29926 | 56102865 ~ 56103198 (-) |
| G821852 | NA | non-coding | downstream | 139926 | 55988150 ~ 55993198 (-) |
| G821850 | NA | non-coding | downstream | 147838 | 55985078 ~ 55985286 (-) |
| G821846 | NA | non-coding | downstream | 162651 | 55970267 ~ 55970473 (-) |
| G821843 | NA | non-coding | downstream | 164476 | 55968437 ~ 55968648 (-) |
| G821925 | NA | non-coding | upstream | 1799 | 56145204 ~ 56145439 (-) |
| G821927 | NA | non-coding | upstream | 3160 | 56146565 ~ 56146771 (-) |
| G821929 | NA | non-coding | upstream | 6212 | 56149617 ~ 56149836 (-) |
| G822190 | NA | non-coding | upstream | 365961 | 56509366 ~ 56509592 (-) |
| G822273 | NA | non-coding | upstream | 421553 | 56564958 ~ 56565166 (-) |
| G821851 | LOC106584099 | other | downstream | 146607 | 55985960 ~ 55986517 (-) |
| G821013 | LOC106572358 | other | downstream | 709565 | 55422543 ~ 55423559 (-) |
| G820757 | NA | other | downstream | 813108 | 55319408 ~ 55320016 (-) |
| G820738 | NA | other | downstream | 823888 | 55308878 ~ 55309236 (-) |
| G820398 | NA | other | downstream | 1378483 | 54754248 ~ 54754641 (-) |
| G824405 | NA | other | upstream | 2297065 | 58440470 ~ 58440858 (-) |
| LOC110531218 | pqbp1 | other | upstream | 2521377 | 58664782 ~ 58668085 (-) |
| LOC118966080 | LOC106572502 | other | upstream | 3079138 | 59222442 ~ 59224300 (-) |
| G825961 | NA | other | upstream | 3494941 | 59638346 ~ 59638894 (-) |
| LOC110532567 | LOC106572513 | other | upstream | 4108196 | 60227530 ~ 60275772 (-) |
