Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110532436 |
| gene name | LOC106567284 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 56708553 ~ 56809173 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036988425.1 | False | 7334 | mRNA | 0.40 | 10 | 56708553 | 56758885 |
| XM_036988426.1 | False | 7233 | mRNA | 0.39 | 9 | 56708553 | 56758885 |
| XM_036988416.1 | False | 8139 | mRNA | 0.40 | 10 | 56708553 | 56809173 |
| XM_036988417.1 | False | 8201 | mRNA | 0.40 | 11 | 56708553 | 56809173 |
| XM_036988418.1 | False | 8100 | mRNA | 0.40 | 10 | 56708553 | 56809173 |
| XM_036988419.1 | False | 8038 | mRNA | 0.40 | 9 | 56708553 | 56809173 |
| XM_036988420.1 | False | 8009 | mRNA | 0.40 | 11 | 56708553 | 56809173 |
| XM_036988421.1 | False | 8071 | mRNA | 0.40 | 12 | 56708553 | 56809173 |
| XM_036988423.1 | False | 7970 | mRNA | 0.40 | 11 | 56708553 | 56809173 |
| XM_036988424.1 | False | 7908 | mRNA | 0.40 | 10 | 56708553 | 56809173 |
| XM_036988427.1 | False | 8133 | mRNA | 0.40 | 10 | 56708553 | 56809173 |
| XM_036988428.1 | False | 8032 | mRNA | 0.40 | 9 | 56708553 | 56809173 |
| TU935287 | True | 4666 | lncRNA | 0.36 | 1 | 56708562 | 56713227 |
56,630,000
56,640,000
56,650,000
56,660,000
56,670,000
56,680,000
56,690,000
56,700,000
56,710,000
56,720,000
56,730,000
56,730,000
56,740,000
56,750,000
56,760,000
56,770,000
56,780,000
56,790,000
56,800,000
56,810,000
56,820,000
56,830,000
NC_048573.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532434 | LOC106572420 | coding | downstream | 67517 | 56640223 ~ 56641036 (-) |
| LOC110532429 | NA | coding | downstream | 565148 | 56133004 ~ 56143428 (-) |
| LOC110532425 | nudt3 | coding | downstream | 589789 | 56112212 ~ 56118764 (-) |
| LOC110532422 | pacsin1 | coding | downstream | 608693 | 56052180 ~ 56099860 (-) |
| LOC110532419 | uhrf1bp1 | coding | downstream | 683630 | 55960333 ~ 56024923 (-) |
| LOC110532438 | LOC106572424 | coding | upstream | 818 | 56809991 ~ 56812100 (-) |
| LOC110531213 | NA | coding | upstream | 5272 | 56814445 ~ 56815434 (-) |
| LOC110532440 | p4r2a | coding | upstream | 10709 | 56819882 ~ 56827075 (-) |
| LOC110532443 | LOC106572415 | coding | upstream | 63731 | 56872904 ~ 56907222 (-) |
| LOC110532446 | LOC106572413 | coding | upstream | 144842 | 56954015 ~ 56959027 (-) |
| G822609 | NA | non-coding | downstream | 53544 | 56652184 ~ 56655009 (-) |
| G822297 | NA | non-coding | downstream | 127177 | 56581080 ~ 56581376 (-) |
| G822273 | NA | non-coding | downstream | 143387 | 56564958 ~ 56565166 (-) |
| G822190 | NA | non-coding | downstream | 198961 | 56509366 ~ 56509592 (-) |
| G821929 | NA | non-coding | downstream | 558717 | 56149617 ~ 56149836 (-) |
| G822698 | NA | non-coding | upstream | 52743 | 56861916 ~ 56862238 (-) |
| G822705 | NA | non-coding | upstream | 60582 | 56869755 ~ 56870953 (-) |
| G822706 | NA | non-coding | upstream | 63237 | 56872410 ~ 56872692 (-) |
| G822721 | NA | non-coding | upstream | 83023 | 56892196 ~ 56892501 (-) |
| G822771 | NA | non-coding | upstream | 162855 | 56972028 ~ 57024524 (-) |
| G821851 | LOC106584099 | other | downstream | 722036 | 55985960 ~ 55986517 (-) |
| G821013 | LOC106572358 | other | downstream | 1284994 | 55422543 ~ 55423559 (-) |
| G820757 | NA | other | downstream | 1388537 | 55319408 ~ 55320016 (-) |
| G820738 | NA | other | downstream | 1399317 | 55308878 ~ 55309236 (-) |
| G824405 | NA | other | upstream | 1631297 | 58440470 ~ 58440858 (-) |
| LOC110531218 | pqbp1 | other | upstream | 1855609 | 58664782 ~ 58668085 (-) |
| LOC118966080 | LOC106572502 | other | upstream | 2413370 | 59222442 ~ 59224300 (-) |
| G825961 | NA | other | upstream | 2829173 | 59638346 ~ 59638894 (-) |
| LOC110532567 | LOC106572513 | other | upstream | 3442428 | 60227530 ~ 60275772 (-) |
| G822630 | NA | non-coding | upstream | 17835 | 56731062 ~ 56731340 (-) |
| G822631 | NA | non-coding | upstream | 19373 | 56732600 ~ 56732803 (-) |
| G822639 | NA | non-coding | upstream | 32264 | 56745491 ~ 56745691 (-) |
| G822655 | NA | non-coding | upstream | 56184 | 56769411 ~ 56769742 (-) |
