LOC110532440 (p4r2a)


Basic Information

Item Value
gene id LOC110532440
gene name p4r2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56819882 ~ 56827075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616337.2
TGCGATCCGTCAaaccaatcccaaagaagaaggcCGGTTTGCCAGACATACTCTGACTGGACATGCCCAGTTGTGtgggtagctaacgttagcctgcaAGTGTGAGTCAAACGGCGCCATAAACTCACTGGGATGCATTGTTGCTAGCTAGCGGTAGCTAGCTTTTTCTGATTTCCTGTCGCTGGTGTGTAGGGGACTTCGGTTGCCATAAAATAGCTTACGTTACAACCATGGAAATCGACACACTTTTGGAGTGTTTTACGGACTTCGAGAAGAAAGGGAAGAAAGATGCCTGCCCTGCCCTGGATCAGTTTCTGTGTCATGTCGCCAAAACGGGAGAAACGATGATTTCATGGTCACAGTTCAAAAGTTATTTCCTGTTTAAACTTGAGAAGGTAATGGATGACTTCAGAGCCTCGACACCAGAccagcgagggccagccaatccTAATGTGGAGTACATTCCGTTtgaagagatgaaggagaggattCTCAAAATCGTAGAAGGATACAACGGGATTCCGTTCACCATCCAGCGTCTGTGTGAGTTACTGACTGAGCCAAAGAGAAACTACACAGGAACAGACAAGTTCCTCAGGGGAGTGGAGAAGAATGTGATGGTGGTCAGCTGTGTGTGTCCTACGTCAGAGAAAAATGGGGCTACCAGTGTAAATAGAATGAATGGAGTGATGTTCCCTGGCAATACCGCTATTTATTCAGAAAGGAATGTAAATGGACCAGACACCCCAAGGCCACTGAACAGACCAAAGCTATCACTATCCACCTCTCTGGCTACAAACGGTCTCCCTGACAGCACAGACGATAAGGAGCCACTCACAGAACAAGAGGAGGAGCATGTTGTCAGTGATTCCTCGGTATCGGAAAGTGATGCCACACAGAGCAGTCCGATGAAGACCAAGCATCCGGAAGAGGATGCAACGGAGGCAGAGAGCCACGAAGTCAAGAGGCTGAAGTTTGACAAAGAcatggatgaagaggaggaagaggtagacAAGGAGATGTCATGTCCTGCACCTGCCCAAAGTTCATCAGACATGCCAGAATCGTCAACAGATGTTGTTGAGGAAGAAAAAGATAAGTCTGCTGATATGCTCACCACAGACGATCATGAGCCCTCCAGTACTCAGACAGAAGATCCCTTTGATGACGAGGAAGAGACATCAGAGAGGGAGGCTGAGTATGGCCCCACCCACAGACTAAAGAGTGACAACACCATGGACCAGTCAGAGGAGCAGCTTGCTCAGTCAGGGAATGATCTGAGTttagaggaacaggaggaaggtGATTGCAGTGACCCAgtaagtagcagcagtagcagcaatgGGGAGGGAGCACCCAGTGAAGAGCCTAtcccctctgcctctcccagCAGTACAGCTGAGTCGTTGGCAGAGGGCTCTGCTGCAGAAAACTGTTCGGAAAGCTCAGAGACTGCAGATGAGCCCATGGAACAGGACTAACCTGAGGCCAACGGCCCCCCCCCAACATTActttacactgtatattgacaCTGTACCAAACCCAGGAGATCTCTGTACCACTATGGACCTGTATCTCCCAGCACAGGGATGCTTTTTGTGTGAGGCCTCAGAGGATTTTCACCCTCAGGTCTCTTCACGCCTTGTAAGACCCACCCACCTCCTGACGGCCACGCATTAGTCCGTTTTTAAAAACTGGAACTTATCATTTAAAGTTCCCCTCCagctagatttttttttaaagcctgtgGCATTCAAAAAAACGACTCAGCTGTACTTTTTTATCACCTTGATAGTTTTTATTTCTCTCATGGATCACTGTCATTTTAATATTTACTGCTATTTTAGACACCAGTTCTAAAGCTGCTTGGTTAACATTGTCATAAGGAATGAATCAGCCActtctgtgtgtttgttgtgaTCTCAATCTGTGGTGAAAGTATCATGTTGGCCGGCCCAGTTGGGGTCTCCTCTGGATCTGTGGGATGCCTTGGGTTTTCCCTTGGTAAAGCTACCGTTCACATCTGTTTAAATTTCTAGTGTAGTTGTCCATACTTTGGAATGTAAAGTATGAAGGATTGTCCATGACACACATCTGTTCCATAAAACCACTGGAAGCCCTTGCCCTGCAAGTTTGGTAATCTTGCAAAGTAAACATACCGAAACCATGGATTGCAACCAATCCTCATGTACTATTGCACTCTGATTGAACAaaacagtgctttcagaaagtattcatacccctcgacttattcccccaaaaatgtacagcttgaattcaaaatagcTTAAATGTTAACACACAATAACCCAGAatgaaaacacatttttagaagtctttgcaaatttattgaaaatgaaataaatatctaatttaaAGGTATACACACCCCTTTGTTATGTCACACCAAACTGAGCTCAGGAGCAGCCAacttcctttgatcatccttgagctgtcactacaacttgattggagtccacctgtggctaATTAatttgtttggacatgatttagacaAACAAGGTTCCACAGTAGACAGTTCATGTCAAAGCAGAAACTattaccatgaagtccaaggagcTGTCCGTAGAGTGCCGAGACAcgattgtgatgaggcatatatctgggggaagggtataaaacaattttAGAGTTTTTGCGAGCACAGTGGTCTCTATCATTGGGACATTGAAAAAATCTAGAATTACCCAGCTGTCCGACCAAGGCAAGAAAGACTTTTGGTAAGGGAGGTGAGTGACTAAGAACCCAATGACTACTCTGACAGAACTAGAGTTCCTtggttgagatgggagaacctgccagaaggtcttgattttttttttattacctttatttaactaggcaagtcagttatgaacaaattctcattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacaacagatttatactttgtcggctcagggattagaacttgcaaccttccggttactagtccaacactaaccactaggctatcctgctgTTCTCAGAAGCCAGAAGTCTTTGCGCACTTCACCAATctgagctttatgggagagtggccagacggaagccgctCCTAACAAAAAGGGACATGATGGAaggcctggagtttgcaaaaaggcatatGAAAGATGGAGCATAAGGCAAAAGATTCTGTTGTCTGATGAGAAACAaattggcctgaatgcaaagcgctgTCTAGAGAGAAACAGGCACAGCTAATCAcccatctaacaccatccctactgtatagcggtggtggcagcatcttgctatagggatgcttttcagtggcagggattgAGAGACTGGTAAGGATACCGCGAACAATGAATGGTGTCAAATCCCTGATGacaacctgcttcagagtgcaaatgaccttggactggggtgaagatttacattccaacaggacaatgaccccaagcatatagccaaagcaatgctggaatgaCTTCAGCACAAGAGTTTGAAAGTCATTGAGTGGCTCAACCAAAGCccattgaaaatctatggaaagacttgaagattgctgttcaccgccaCTTCCCatttaacttaacagagcttgagaaaatctgcaaggaagaatgggaggaaaTCCCCAAATCCAAATGTGCAAAGCTGATGCAGACGTACCCAAGACGACACAAAGCTGTAATCGCCACCAAAGGTGTTtttgactcgggtgtgaatacttatgtaaattatatgTATTTAtgattcaatacatttgcaaaaataaatgttttcactttgacattatgggctatttTGTGTAGGAAAATTGAATTTGGGCTTTAccccaacaaaatgtggaataggttgaggggaatgaatactttctgacagCACTGTATAGCTGTGAACAAATTGCTCTAAACTTTCCAGGAGCACTCTATCTCACTGTTCTCTACCTTCTCACCTGTTGCTAAGTCTTCCAAAACATCAGAAGACAATATTGCCAATTTCCTGATTTCTGTTGTCTGACAGTATTGAGTGAATGCTTTTGTTTGTTGACCACAGTTACTGTCAGTTTTTGTGTCCGATTTACTCAAATGGTAAGAAAACATGGTTTACTTTAGTTCTCACAATCTTTTCAATTCAATAAAATTACATTTGTCAAATTGAAATGTCAATATCAGCACTAAATGTCATTGATCACAAGAATCTGGTTTGATTTTATTTTGAGAGTTTACTGGCTGCCATATCTTTACCAGTTTCTGCAACTGTCTTTTTATATATTAGGATAAACATTTCTGTAAAGTAGATTTTGTAGATTGTAATATGTGTTCACTGCCTTTGTGAAACCGATTGACATCTCTGTAAATTGAATGATTGGCTTTCAGCACAGTATTCATATGAAGCAATAAATGCTAACATTTTAA
>XM_021616338.2
ATGCGATCCGTCAaaccaatcccaaagaagaaggcCGGTTTGCCAGACATACTCTGACTGGACATGCCCAGTTGTGtgggtagctaacgttagcctgcaAGTGTGAGTCAAACGGCGCCATAAACTCACTGGGATGCATTGTTGCTAGCTAGCGGTAGCTAGCTTTTTCTGATTTCCTGTCGCTGGTGTGTAGGGGACTTCGGTTGCCATAAAATAGCTTACGTTACAACCATGGAAATCGACACACTTTTGGAGTGTTTTACGGTTTCCTATTTTCATGCATCTACGTTCAGACTTCGAGAAGAAAGGGAAGAAAGATGCCTGCCCTGCCCTGGATCAGTTTCTGTGTCATGTCGCCAAAACGGGAGAAACGATGATTTCATGGTCACAGTTCAAAAGTTATTTCCTGTTTAAACTTGAGAAGGTAATGGATGACTTCAGAGCCTCGACACCAGAccagcgagggccagccaatccTAATGTGGAGTACATTCCGTTtgaagagatgaaggagaggattCTCAAAATCGTAGAAGGATACAACGGGATTCCGTTCACCATCCAGCGTCTGTGTGAGTTACTGACTGAGCCAAAGAGAAACTACACAGGAACAGACAAGTTCCTCAGGGGAGTGGAGAAGAATGTGATGGTGGTCAGCTGTGTGTGTCCTACGTCAGAGAAAAATGGGGCTACCAGTGTAAATAGAATGAATGGAGTGATGTTCCCTGGCAATACCGCTATTTATTCAGAAAGGAATGTAAATGGACCAGACACCCCAAGGCCACTGAACAGACCAAAGCTATCACTATCCACCTCTCTGGCTACAAACGGTCTCCCTGACAGCACAGACGATAAGGAGCCACTCACAGAACAAGAGGAGGAGCATGTTGTCAGTGATTCCTCGGTATCGGAAAGTGATGCCACACAGAGCAGTCCGATGAAGACCAAGCATCCGGAAGAGGATGCAACGGAGGCAGAGAGCCACGAAGTCAAGAGGCTGAAGTTTGACAAAGAcatggatgaagaggaggaagaggtagacAAGGAGATGTCATGTCCTGCACCTGCCCAAAGTTCATCAGACATGCCAGAATCGTCAACAGATGTTGTTGAGGAAGAAAAAGATAAGTCTGCTGATATGCTCACCACAGACGATCATGAGCCCTCCAGTACTCAGACAGAAGATCCCTTTGATGACGAGGAAGAGACATCAGAGAGGGAGGCTGAGTATGGCCCCACCCACAGACTAAAGAGTGACAACACCATGGACCAGTCAGAGGAGCAGCTTGCTCAGTCAGGGAATGATCTGAGTttagaggaacaggaggaaggtGATTGCAGTGACCCAgtaagtagcagcagtagcagcaatgGGGAGGGAGCACCCAGTGAAGAGCCTAtcccctctgcctctcccagCAGTACAGCTGAGTCGTTGGCAGAGGGCTCTGCTGCAGAAAACTGTTCGGAAAGCTCAGAGACTGCAGATGAGCCCATGGAACAGGACTAACCTGAGGCCAACGGCCCCCCCCCAACATTActttacactgtatattgacaCTGTACCAAACCCAGGAGATCTCTGTACCACTATGGACCTGTATCTCCCAGCACAGGGATGCTTTTTGTGTGAGGCCTCAGAGGATTTTCACCCTCAGGTCTCTTCACGCCTTGTAAGACCCACCCACCTCCTGACGGCCACGCATTAGTCCGTTTTTAAAAACTGGAACTTATCATTTAAAGTTCCCCTCCagctagatttttttttaaagcctgtgGCATTCAAAAAAACGACTCAGCTGTACTTTTTTATCACCTTGATAGTTTTTATTTCTCTCATGGATCACTGTCATTTTAATATTTACTGCTATTTTAGACACCAGTTCTAAAGCTGCTTGGTTAACATTGTCATAAGGAATGAATCAGCCActtctgtgtgtttgttgtgaTCTCAATCTGTGGTGAAAGTATCATGTTGGCCGGCCCAGTTGGGGTCTCCTCTGGATCTGTGGGATGCCTTGGGTTTTCCCTTGGTAAAGCTACCGTTCACATCTGTTTAAATTTCTAGTGTAGTTGTCCATACTTTGGAATGTAAAGTATGAAGGATTGTCCATGACACACATCTGTTCCATAAAACCACTGGAAGCCCTTGCCCTGCAAGTTTGGTAATCTTGCAAAGTAAACATACCGAAACCATGGATTGCAACCAATCCTCATGTACTATTGCACTCTGATTGAACAaaacagtgctttcagaaagtattcatacccctcgacttattcccccaaaaatgtacagcttgaattcaaaatagcTTAAATGTTAACACACAATAACCCAGAatgaaaacacatttttagaagtctttgcaaatttattgaaaatgaaataaatatctaatttaaAGGTATACACACCCCTTTGTTATGTCACACCAAACTGAGCTCAGGAGCAGCCAacttcctttgatcatccttgagctgtcactacaacttgattggagtccacctgtggctaATTAatttgtttggacatgatttagacaAACAAGGTTCCACAGTAGACAGTTCATGTCAAAGCAGAAACTattaccatgaagtccaaggagcTGTCCGTAGAGTGCCGAGACAcgattgtgatgaggcatatatctgggggaagggtataaaacaattttAGAGTTTTTGCGAGCACAGTGGTCTCTATCATTGGGACATTGAAAAAATCTAGAATTACCCAGCTGTCCGACCAAGGCAAGAAAGACTTTTGGTAAGGGAGGTGAGTGACTAAGAACCCAATGACTACTCTGACAGAACTAGAGTTCCTtggttgagatgggagaacctgccagaaggtcttgattttttttttattacctttatttaactaggcaagtcagttatgaacaaattctcattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacaacagatttatactttgtcggctcagggattagaacttgcaaccttccggttactagtccaacactaaccactaggctatcctgctgTTCTCAGAAGCCAGAAGTCTTTGCGCACTTCACCAATctgagctttatgggagagtggccagacggaagccgctCCTAACAAAAAGGGACATGATGGAaggcctggagtttgcaaaaaggcatatGAAAGATGGAGCATAAGGCAAAAGATTCTGTTGTCTGATGAGAAACAaattggcctgaatgcaaagcgctgTCTAGAGAGAAACAGGCACAGCTAATCAcccatctaacaccatccctactgtatagcggtggtggcagcatcttgctatagggatgcttttcagtggcagggattgAGAGACTGGTAAGGATACCGCGAACAATGAATGGTGTCAAATCCCTGATGacaacctgcttcagagtgcaaatgaccttggactggggtgaagatttacattccaacaggacaatgaccccaagcatatagccaaagcaatgctggaatgaCTTCAGCACAAGAGTTTGAAAGTCATTGAGTGGCTCAACCAAAGCccattgaaaatctatggaaagacttgaagattgctgttcaccgccaCTTCCCatttaacttaacagagcttgagaaaatctgcaaggaagaatgggaggaaaTCCCCAAATCCAAATGTGCAAAGCTGATGCAGACGTACCCAAGACGACACAAAGCTGTAATCGCCACCAAAGGTGTTtttgactcgggtgtgaatacttatgtaaattatatgTATTTAtgattcaatacatttgcaaaaataaatgttttcactttgacattatgggctatttTGTGTAGGAAAATTGAATTTGGGCTTTAccccaacaaaatgtggaataggttgaggggaatgaatactttctgacagCACTGTATAGCTGTGAACAAATTGCTCTAAACTTTCCAGGAGCACTCTATCTCACTGTTCTCTACCTTCTCACCTGTTGCTAAGTCTTCCAAAACATCAGAAGACAATATTGCCAATTTCCTGATTTCTGTTGTCTGACAGTATTGAGTGAATGCTTTTGTTTGTTGACCACAGTTACTGTCAGTTTTTGTGTCCGATTTACTCAAATGGTAAGAAAACATGGTTTACTTTAGTTCTCACAATCTTTTCAATTCAATAAAATTACATTTGTCAAATTGAAATGTCAATATCAGCACTAAATGTCATTGATCACAAGAATCTGGTTTGATTTTATTTTGAGAGTTTACTGGCTGCCATATCTTTACCAGTTTCTGCAACTGTCTTTTTATATATTAGGATAAACATTTCTGTAAAGTAGATTTTGTAGATTGTAATATGTGTTCACTGCCTTTGTGAAACCGATTGACATCTCTGTAAATTGAATGATTGGCTTTCAGCACAGTATTCATATGAAGCAATAAATGCTAACATTTTAA

Function

NR:

description
serine/threonine-protein phosphatase 4 regulatory subunit 2-A-like isoform X2

GO: NA

KEGG:

id description
K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616337.2 False 4415 mRNA 0.43 9 56819882 56827074
XM_021616338.2 True 4444 mRNA 0.43 9 56819882 56827075
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Neighbor

gene id symbol gene type direction distance location
LOC110531213 NA coding downstream 4448 56814445 ~ 56815434 (-)
LOC110532438 LOC106572424 coding downstream 7782 56809991 ~ 56812100 (-)
LOC110532436 LOC106567284 coding downstream 10709 56708553 ~ 56809173 (-)
LOC110532434 LOC106572420 coding downstream 178846 56640223 ~ 56641036 (-)
LOC110532429 NA coding downstream 676477 56133004 ~ 56143428 (-)
LOC110532443 LOC106572415 coding upstream 45829 56872904 ~ 56907222 (-)
LOC110532446 LOC106572413 coding upstream 126940 56954015 ~ 56959027 (-)
LOC110532448 LOC106572407 coding upstream 170232 56997307 ~ 57051295 (-)
LOC110532449 LOC106572406 coding upstream 261741 57088816 ~ 57095305 (-)
LOC110532451 LOC106572400 coding upstream 341961 57169036 ~ 57184936 (-)
G822655 NA non-coding downstream 50140 56769411 ~ 56769742 (-)
G822639 NA non-coding downstream 74191 56745491 ~ 56745691 (-)
G822631 NA non-coding downstream 87079 56732600 ~ 56732803 (-)
G822630 NA non-coding downstream 88542 56731062 ~ 56731340 (-)
G822698 NA non-coding upstream 34841 56861916 ~ 56862238 (-)
G822705 NA non-coding upstream 42680 56869755 ~ 56870953 (-)
G822706 NA non-coding upstream 45335 56872410 ~ 56872692 (-)
G822721 NA non-coding upstream 65121 56892196 ~ 56892501 (-)
G822771 NA non-coding upstream 144953 56972028 ~ 57024524 (-)
G821851 LOC106584099 other downstream 833365 55985960 ~ 55986517 (-)
G821013 LOC106572358 other downstream 1396323 55422543 ~ 55423559 (-)
G820757 NA other downstream 1499866 55319408 ~ 55320016 (-)
G820738 NA other downstream 1510646 55308878 ~ 55309236 (-)
G824405 NA other upstream 1613395 58440470 ~ 58440858 (-)
LOC110531218 pqbp1 other upstream 1837707 58664782 ~ 58668085 (-)
LOC118966080 LOC106572502 other upstream 2395468 59222442 ~ 59224300 (-)
G825961 NA other upstream 2811271 59638346 ~ 59638894 (-)
LOC110532567 LOC106572513 other upstream 3424526 60227530 ~ 60275772 (-)

Expression

LOC110532440(p4r2a) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110532440(p4r2a) Expression in each Bioproject

Bar chart with 21 bars.
LOC110532440(p4r2a) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network