LOC110532442 (eif4e3)


Basic Information

Item Value
gene id LOC110532442
gene name eif4e3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56830744 ~ 56839626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616347.2
ttttGTTTAGGAAGCATGTGACAATGGAAATGTTTTTGATTATAAAGGACATTTATAATGTTCATTCACACATTCAATTCATCAATCTATTTTATATTGGCAGATGCAATTGTCACTGAAAATATCACTGTCATGCTTAGATGTTTTAGTCTGAGTACCAGTTTGTTTAGTTTATTCTACTCTTTGCTACTCCTGTCATGATAAACTTTTGCATaatttataccctgatgaagacagcttggctgtcaacgttggtattacatttttgcatctgagctcctagagtgtgcggctctcttttattttttattttcaaacTTCAGCATAATGACATGGCGTTCAAGGTGTGGAATGTTAGATTAACAGACTGGTACCCATGCTGGCCATAGATGTTTAAGGTCATGATACTGATTGAATATTATGATAATTCTGGATGATTTAGACATATTTACTTTATTGATGTTTGTGTAATGGACTGTGAAAAGTAGAGAACAAATGTATTATAATCTACAGCATCGCGCCTGCCGCTTTTGGCAAGAACGTTTGGTCTGCAGACAGCAATACGTCATTTTACTGTTGTGGCGGCAGAACAGTGAAGCGACGAATGAGTCAGCAGAGTAGGCACTTCCTATACAATCAAAGGGGGAAACGAGATcttttaaaaaaacaatcaaatcGATAATTTTTTACAAGCAAGGAAATGGCAGTTCCTGCTGTCCCGAATCTGCAATTGAACAAAACAGTAAGTCAAAACTCCCCCGAACGTAACATCCATATCGACGAAAGAGAATTGGAGAACATCACGAACAACGATGGAAACGGAACTCTCCCATTACATTCTCCGTGGACTTTTTGGCTTGATAGATCTTTACCAGGAACAACGGCAGCAGAATGTGAATCAGGTCTGAAAAAAATCTACACTGTGCAAACAGTTCAGAGCTTTTGGAGTGTGTACAACAATATACCTGGAGTATCCAGCCTACCACTGAGATGTAGCTATCAcctaatgagaggagagagaagaccaCTCTGGGAAGAAGAGAGTAATGCAAAGGGGGGAGTTTGGAAAATGAAAGTACCCAAAGAAAGCACTCCTGCTGTATGGAAGGAGTTACTGCTGGCCACTATTGGGGAGCAATTTACTGATTACTGTGCTTCAGAGGATGAGGTGGTTGGTGTTAGTGTCAGCGTTCGAGACAGAGAAGATGTTGTTCAAGTCTGGAATGGAAATGCCTTTTTTGCTAACGACGCAAACATCCTAGGAAGGATCTATGAACTTCTTCCACAGATAACTTTTAAAGCAGTATTTTATAAGCCACATGAGGAGCACCATGCCTTCGAAGGAGGTCGCCCAAGACATTAGCAAGCTTTGCACATTTGACACTTTGTTGTTTTTGGTCATGGAAATTGACTGAATCTTCTGAGCTCTACTGTCTTTCATGAATGTGTTATACAATTACTTCAATTTGGGCAGACAGAAAATGTCATAGCTAGGCTTCATTTTAGGATGACTGATACATGTTCCTTAGTGTTTAGTTTTTTTATACAAAAATATTTAGCTAAACCACACTTTATCTCACCAGTGCACTTTTACCAGAGCCTTTTAGTTTTCACAGTTTCCTGATCTTACATTGAATTTACATTGTTCCCTGATTCTAGAATGAATGGAGAGTATTTTCCTCAAGCCAGTATTATTCATACAGTTTTATGTGAAAATGTTGCacattcaaatgttttatttatttgttttttggggtttgtagtttatttttggcgggggggggggagatcttaACTGTTACTGGTTGTTAGATTTGTTAAATAACACCAACTTTTTTACAAAAACTAAATCAACACTGCGTGTTACCAGATAAATGCTATAGTTTAGTTTACCCTGAGTGTTTTGGTAATCAGCAGTGGGTCATTGTACAAACACACTCAATTGTTGTTTCCGAAATGCACAACAGGCCTTTTTAATTTTTACTGTAATGAACACGATTACTAAGCAAGGAATCTAGACTACGCCTAGATGGGTATCAGTTTTCTGAAGAAGATCAATTGCACATGTCAATTGGTTCATTCAAATTTTTTTCTTCACTTTTGTGTTTATTACATTTCTATCATGAATATTGTTCTCATTTAAGTCCTACAAACTAAAAGAACCATTTTGAAATTCAAAAAACGATATGATGTATGAACTGTGCTTTGGGTTGAATGAGTACTTATCTTTACCAAAGACctttctaaccctctctctctctgtcgtgtgTGTGCAcaagcatgcatgtgtgtgtatgcacccTGCCAAGCTTTTTAAGTTTTGTAACCTGTTGGTTGTAATTGTCATCAGATGCTTTGGAGCTTCTCTGTGACTCAGGTCATCCATGTTCAAACACTAAGCACATTAATTAGGGACGTTTTTGTTGAAAGAACAAATAATTGAACATAATGTAGCTGGACTTTCTGGCAGTTTTTACTATAGTGCCCAGTCAAGGTGAGATCTCAACTGATTATTAATCTTTGGAATGGTGCCTTGTGTTTTCCAAGGGTTTCAGTCTTGAAAGTTGTTTATTTTTAACATTGAACCAGTCAAAATGTAAAATCAATATTTTTGCTGATATAGATTTGGAAATGTTGGAAAAATGAAATGCTAAACAATCA
>XM_021616348.2
TCAATGTACTGCTCTGGCCAAGAGAACGCAGACAATTTAAAGGGGGTCATTCTTGTTTACTGCTGGGCTAGAGTCCAGTGGAAAGGGGATTGACACCTGATCTCCGACCTGGCTGCTTTGAGCACAACCTCTTTTGGCTGAGTTATCTAGTAAGGCCTGTTTACAGAGTGGGAGGAAGGCTTGCTATAGGTACAAAACTAAACAGGTTATTTTAGGTCTGATTGCTAGATAAATTCGTTTAACTATTGATATtttgtagtgctgagcgattcCGAGTTCGGTTTCGTTTTGGGATCTTTTTAGGACTGCTAGATAGATCATGCCAGATGCGGAGTTATACATTTGTTTAAATATTGATGTTGTGATTACTAGGTcgttttggaaaaaattgtgagTTTTCGGTTTCgataaaataaaatgcattatgtgggttacatgctgtaacaacacagaataaacaaAGTGATGGTAATGACTGTCCATTTACTTTGACTTATTggtctcctgagtggcgcagccgTCTCAGCCGTCTAACTTGTTAGATTCATCCAATGTCTGTCATGTTTTTGGAATACGTGATCGCGTCGTCGCTGCTCGCACTGCTCCTTGTGCGCACGGAGTGCTATTGCGCATGTGATGTTGGTCTGTACAAATCGGATGCAACCCGGATATAGACGGTTCATGAATCGGCGTAGTCTAACATGAGTTTCCAGTTTTTATTATACCACGGTGCTTGGGCCCCACAGGCTTGCTTGGCAAGAACCAACGACAACAAGCAGCTGCATGCGCAATATCTTTACCAGGAACAACGGCAGCAGAATGTGAATCAGGTCTGAAAAAAATCTACACTGTGCAAACAGTTCAGAGCTTTTGGAGTGTGTACAACAATATACCTGGAGTATCCAGCCTACCACTGAGATGTAGCTATCAcctaatgagaggagagagaagaccaCTCTGGGAAGAAGAGAGTAATGCAAAGGGGGGAGTTTGGAAAATGAAAGTACCCAAAGAAAGCACTCCTGCTGTATGGAAGGAGTTACTGCTGGCCACTATTGGGGAGCAATTTACTGATTACTGTGCTTCAGAGGATGAGGTGGTTGGTGTTAGTGTCAGCGTTCGAGACAGAGAAGATGTTGTTCAAGTCTGGAATGGAAATGCCTTTTTTGCTAACGACGCAAACATCCTAGGAAGGATCTATGAACTTCTTCCACAGATAACTTTTAAAGCAGTATTTTATAAGCCACATGAGGAGCACCATGCCTTCGAAGGAGGTCGCCCAAGACATTAGCAAGCTTTGCACATTTGACACTTTGTTGTTTTTGGTCATGGAAATTGACTGAATCTTCTGAGCTCTACTGTCTTTCATGAATGTGTTATACAATTACTTCAATTTGGGCAGACAGAAAATGTCATAGCTAGGCTTCATTTTAGGATGACTGATACATGTTCCTTAGTGTTTAGTTTTTTTATACAAAAATATTTAGCTAAACCACACTTTATCTCACCAGTGCACTTTTACCAGAGCCTTTTAGTTTTCACAGTTTCCTGATCTTACATTGAATTTACATTGTTCCCTGATTCTAGAATGAATGGAGAGTATTTTCCTCAAGCCAGTATTATTCATACAGTTTTATGTGAAAATGTTGCacattcaaatgttttatttatttgttttttggggtttgtagtttatttttggcgggggggggggagatcttaACTGTTACTGGTTGTTAGATTTGTTAAATAACACCAACTTTTTTACAAAAACTAAATCAACACTGCGTGTTACCAGATAAATGCTATAGTTTAGTTTACCCTGAGTGTTTTGGTAATCAGCAGTGGGTCATTGTACAAACACACTCAATTGTTGTTTCCGAAATGCACAACAGGCCTTTTTAATTTTTACTGTAATGAACACGATTACTAAGCAAGGAATCTAGACTACGCCTAGATGGGTATCAGTTTTCTGAAGAAGATCAATTGCACATGTCAATTGGTTCATTCAAATTTTTTTCTTCACTTTTGTGTTTATTACATTTCTATCATGAATATTGTTCTCATTTAAGTCCTACAAACTAAAAGAACCATTTTGAAATTCAAAAAACGATATGATGTATGAACTGTGCTTTGGGTTGAATGAGTACTTATCTTTACCAAAGACctttctaaccctctctctctctgtcgtgtgTGTGCAcaagcatgcatgtgtgtgtatgcacccTGCCAAGCTTTTTAAGTTTTGTAACCTGTTGGTTGTAATTGTCATCAGATGCTTTGGAGCTTCTCTGTGACTCAGGTCATCCATGTTCAAACACTAAGCACATTAATTAGGGACGTTTTTGTTGAAAGAACAAATAATTGAACATAATGTAGCTGGACTTTCTGGCAGTTTTTACTATAGTGCCCAGTCAAGGTGAGATCTCAACTGATTATTAATCTTTGGAATGGTGCCTTGTGTTTTCCAAGGGTTTCAGTCTTGAAAGTTGTTTATTTTTAACATTGAACCAGTCAAAATGTAAAATCAATATTTTTGCTGATATAGATTTGGAAATGTTGGAAAAATGAAATGCTAAACAATCA
>XM_021616349.2
TCAATGTACTGCTCTGGCCAAGAGAACGCAGACAATTTAAAGGGGGTCATTCTTGTTTACTGCTGGGCTAGAGTCCAGTGGAAAGGGGATTGACACCTGATCTCCGACCTGGCTGCTTTGAGCACAACCTCTTTTGGCTGAGTTATCTAGTAAGGCCTGTTTACAGAGTGGGAGGAAGGCTTGCTATAGGTACAAAACTAAACAGGTTATTTTAGGTCTGATTGCTAGATAAATTCGTTTAACTATTGATATtttgtagtgctgagcgattcCGAGTTCGGTTTCGTTTTGGGATCTTTTTAGGACTGCTAGATAGATCATGCCAGATGCGGAGTTATACATTTGTTTAAATATTGATGTTGTGATTACTAGGTcgttttggaaaaaattgtgagTTTTCGGTTTCgataaaataaaatgcattatgtgggttacatgctgtaacaacacagaataaacaaAGTGATGGTAATGACTGTCCATTTACTTTGACTTATTggtctcctgagtggcgcagccgTCTCAGCCGTCTAACTTGTTAGATTCATCCAATGTCTGTCATGTTTTTGGAATACGTGATCGCGTCGTCGCTGCTCGCACTGCTCCTTGTGCGCACGGAGTGCTATTGCGCATGTGATGTTGGTCTGTACAAATCGGATGCAACCCGGATATAGACGGTTCATGAATCGGCGTAGTCTAACATGAGTTTCCAGTTTTTATTATACCACGGTGCTTGGGCCCCACAGGCTTGCTTGGCAAGAACCAACGACAACAAGCAGCTGCATGCGCAATGTATTCTGATCATTGTAATCTTTACCAGGAACAACGGCAGCAGAATGTGAATCAGGTCTGAAAAAAATCTACACTGTGCAAACAGTTCAGAGCTTTTGGAGTGTGTACAACAATATACCTGGAGTATCCAGCCTACCACTGAGATGTAGCTATCAcctaatgagaggagagagaagaccaCTCTGGGAAGAAGAGAGTAATGCAAAGGGGGGAGTTTGGAAAATGAAAGTACCCAAAGAAAGCACTCCTGCTGTATGGAAGGAGTTACTGCTGGCCACTATTGGGGAGCAATTTACTGATTACTGTGCTTCAGAGGATGAGGTGGTTGGTGTTAGTGTCAGCGTTCGAGACAGAGAAGATGTTGTTCAAGTCTGGAATGGAAATGCCTTTTTTGCTAACGACGCAAACATCCTAGGAAGGATCTATGAACTTCTTCCACAGATAACTTTTAAAGCAGTATTTTATAAGCCACATGAGGAGCACCATGCCTTCGAAGGAGGTCGCCCAAGACATTAGCAAGCTTTGCACATTTGACACTTTGTTGTTTTTGGTCATGGAAATTGACTGAATCTTCTGAGCTCTACTGTCTTTCATGAATGTGTTATACAATTACTTCAATTTGGGCAGACAGAAAATGTCATAGCTAGGCTTCATTTTAGGATGACTGATACATGTTCCTTAGTGTTTAGTTTTTTTATACAAAAATATTTAGCTAAACCACACTTTATCTCACCAGTGCACTTTTACCAGAGCCTTTTAGTTTTCACAGTTTCCTGATCTTACATTGAATTTACATTGTTCCCTGATTCTAGAATGAATGGAGAGTATTTTCCTCAAGCCAGTATTATTCATACAGTTTTATGTGAAAATGTTGCacattcaaatgttttatttatttgttttttggggtttgtagtttatttttggcgggggggggggagatcttaACTGTTACTGGTTGTTAGATTTGTTAAATAACACCAACTTTTTTACAAAAACTAAATCAACACTGCGTGTTACCAGATAAATGCTATAGTTTAGTTTACCCTGAGTGTTTTGGTAATCAGCAGTGGGTCATTGTACAAACACACTCAATTGTTGTTTCCGAAATGCACAACAGGCCTTTTTAATTTTTACTGTAATGAACACGATTACTAAGCAAGGAATCTAGACTACGCCTAGATGGGTATCAGTTTTCTGAAGAAGATCAATTGCACATGTCAATTGGTTCATTCAAATTTTTTTCTTCACTTTTGTGTTTATTACATTTCTATCATGAATATTGTTCTCATTTAAGTCCTACAAACTAAAAGAACCATTTTGAAATTCAAAAAACGATATGATGTATGAACTGTGCTTTGGGTTGAATGAGTACTTATCTTTACCAAAGACctttctaaccctctctctctctgtcgtgtgTGTGCAcaagcatgcatgtgtgtgtatgcacccTGCCAAGCTTTTTAAGTTTTGTAACCTGTTGGTTGTAATTGTCATCAGATGCTTTGGAGCTTCTCTGTGACTCAGGTCATCCATGTTCAAACACTAAGCACATTAATTAGGGACGTTTTTGTTGAAAGAACAAATAATTGAACATAATGTAGCTGGACTTTCTGGCAGTTTTTACTATAGTGCCCAGTCAAGGTGAGATCTCAACTGATTATTAATCTTTGGAATGGTGCCTTGTGTTTTCCAAGGGTTTCAGTCTTGAAAGTTGTTTATTTTTAACATTGAACCAGTCAAAATGTAAAATCAATATTTTTGCTGATATAGATTTGGAAATGTTGGAAAAATGAAATGCTAAACAATCA

Function

symbol description
eif4e3 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within regulation of translation and translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex and mRNA cap binding activity complex. Orthologous to human EIF4E3 (eukaryotic translation initiation factor 4E family member 3).

NR:

description
eukaryotic translation initiation factor 4E type 3 isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006417 regulation of translation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616347.2 False 2661 mRNA 0.37 7 56830744 56839626
XM_021616348.2 False 2589 mRNA 0.39 7 56832385 56839626
XM_021616349.2 True 2606 mRNA 0.39 7 56832385 56839626

Neighbor

gene id symbol gene type direction distance location
LOC110532437 LOC106572423 coding upstream 122417 56661757 ~ 56708327 (+)
LOC110532435 LOC106572422 coding upstream 178660 56645780 ~ 56652084 (+)
LOC110532433 LOC106572420 coding upstream 188761 56590691 ~ 56641983 (+)
LOC110531212 LOC106567287 coding upstream 367197 56246710 ~ 56463547 (+)
LOC110532427 LOC106572343 coding upstream 700331 56125754 ~ 56132936 (+)
LOC110532441 LOC106572418 coding downstream 91 56839717 ~ 56863877 (+)
LOC110532445 LOC106572414 coding downstream 74956 56914582 ~ 56946999 (+)
LOC110532447 lmod3 coding downstream 107852 56947478 ~ 56948805 (+)
LOC110531214 lmod3 coding downstream 109178 56948804 ~ 56950054 (+)
LOC110531215 uba3 coding downstream 119422 56959048 ~ 56979903 (+)
G822438 NA non-coding upstream 22200 56806388 ~ 56808544 (+)
G822436 NA non-coding upstream 25420 56805114 ~ 56805324 (+)
G822435 NA non-coding upstream 25839 56804680 ~ 56804905 (+)
G822434 NA non-coding upstream 26477 56804054 ~ 56804267 (+)
G822423 NA non-coding upstream 40813 56789698 ~ 56789931 (+)
G822470 NA non-coding downstream 30453 56870079 ~ 56871432 (+)
G822471 NA non-coding downstream 32759 56872385 ~ 56872717 (+)
G822473 NA non-coding downstream 37701 56877327 ~ 56877791 (+)
G822474 LOC106572415 non-coding downstream 38757 56878383 ~ 56878743 (+)
G822481 NA non-coding downstream 51374 56891000 ~ 56891203 (+)
G822404 NA other upstream 67204 56762625 ~ 56763540 (+)
G822283 NA other upstream 257787 56572607 ~ 56572957 (+)
LOC110532426 NA other upstream 706559 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 767089 56061706 ~ 56063655 (+)
LOC110532462 LOC106572392 other downstream 502775 57342345 ~ 57958962 (+)
G823373 NA other downstream 1188993 58028619 ~ 58028857 (+)
G823467 NA other downstream 1365637 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1407488 58216176 ~ 58250307 (+)
LOC110532478 LOC106572378 other downstream 1549045 58385510 ~ 58390570 (+)

Expression


Co-expression Network