LOC110532441 (LOC106572418)


Basic Information

Item Value
gene id LOC110532441
gene name LOC106572418
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56839717 ~ 56863877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988433.1
CAACTGTTTATCTATCTGTGTTTGCTAACGGTGGTTGCTGAGTGAGTGTATTTCAATCGCTTCTTATCTTGCTCAACAAGACGTGccaaatagctagctagtagctCAGGCTACACATTGATGCCCCGGTCAGTGAGTCCAGATGCATGAGTCTGGGTCAGAACAGACAGCCTGCACCAGTCCAGCCAATCAGACGGAGAATGGGGACAGTGCTGAGAAGGATGATTGTCTGAGTGCTAAGCCACTAACTCCAGAGGGTTCTGGGGCTGACAGTCAGCAGCAAAACCAGGTTACAGTTTCAGTGTCTATGATGACCCCTCCGGTGGAGACTCAGCAGACACAGCAGCAGGTCCTCAACCCACAGCAGATCCAGGCCCTGCTCCAGCAGCAGAAAGCACTCATGTTACACCAGCAACACATACAGGATCTCTGCCAGAAACAGCAGGACCAGTTCAACGCCCAGCTCCTACAGCAGAAGCATGCTGAGAAGTCAGGCCAAGAGCTAGCTGCTCAGCACATGGCCATCCAGCAGCAGCTCCTGCAGGTCCAACAGCAGCACCTCCTTAGCCTCCAGAGACAgggtctcctgtctgtcctgcccTCCATGAGCCCCTCTGCAGCTCAGGGTTTAATGAAAGGGTGTGAGAATGGCACCAGCCTGCTCTCTGGTGGTGAGAATCCAGCTACTCTTCAGAAGAACCTGCTCCACAGTCAGCATTCCACCACCAATGGGAATCATCCATCACAGATCCTAAAGAAGAAAGACAGTGTGCCTGTGGATAATCACACACAAAACACTCACCCTCTCTATGGACACGGCATGTGCAAATGGTCTGGCTGTGAGGCTGTCTTTGGAGACATTCAAGTTTTTCTCAAGCATCTAAACAGTGAACATACACTGGATGACAAGAGTACAGCACAGTGTAGAGTGCAGATGCAGGTTGTTCAGCAGCTAGAACTGCAGTTGAAAAAAGACAAAGAGCGTCTGCAAGCCATGATGTCTCACCTCAAATCCTCTGATCAAAAGTCCAAACCAGCAACCCCAACGGGGAATCTTGTGCCCAATGTCTCCTTCTCCCAGGTGACATTTCCCAAGGTGCTTCCTTCCATGACCTTGTCTCAAAATGCCACTGCTCCTTCTACACCCCTGACACCACCCCcaacctcctcctctatcctccctccccacaccctGCTCACTGTGAGCCCTGGAAGGAGATGGTACTCAGACAGCAAGACCATGAAATACAGCAAGACCATGAATCAAGATATTGTTCAGAATAAAGAAGCTAGACCGCCATTTACATATGCAGCCCTAATAAGACAGGCAATATTTGAATCCCCCTATAAGCAGCTGACACTAAATGAAATCTACAATTGGTTCACGCGAACATTTTCCTATTTTAGACGCAACGCCGCAACATGGAAGAATGCAGTGAGACACAACCTCAGCCTCCACAAGTGTTTTGTGAGAGTGGAGAATGTAAAAGGAGCTGTGTGGACAGTTGATGAGATGGAGTTCCAGAGGAGAAGGCCCCAGAAGCCTGCTGGTGAAGGGTCTCTCAAGAGGGAGAACACTGACCATGGTCACTGCTCAGCTTTCCTTACTCCTAAGGTGGCCCTGATGATACACAGGGGCCTGTTTGAACTCCTAGAGACTGAAGGTGGGGACTTGCTGGACTCCAGCTTCCAGTCCTGTGACCAGAAGACCAGTGGCTGCTGTGACATGGAGGATGTTGCCACTACATCCCCACAGATTGCCATAGAAACCATGCTAGAGGAGTTGGCTCCCAACCTGTGGGAAGATGACCTGGACAGACTGGTGGACTTTGGCCACCTAGTCAGCCCTGAGCTACGAATGAAAGTGCTGACTGTGCTGCTCCACGGGGGCGTGAACATCGACATGTCCTTCATGGTGTACGTGGCCCACCAGAAAGGGTTCCAGACGGAAGAGGAGAAGGCCCGGATCAGCCGCTGCATGATGGAGCTGGAGCTGCCTGTGTGGCACCAGGACTGCACTCTGGCCCTGGTGCAGGAGTTTAAACACTCTGCAGGGTCCCTGAGGATGCCTGTGCTGTGCAGGTCTGGACATCTTTCCTTTAAAGGGGAaagatatgtacccattgattattgaagaatataatgtataaatgcctcatgagctaagttcaactgtcttaccccatcagaacccaaaatataagcttgttttactcct

Function

NR:

description
forkhead box protein P1-B-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988433.1 True 2218 mRNA 0.51 18 56839717 56863877

Neighbor

gene id symbol gene type direction distance location
LOC110532442 eif4e3 coding upstream 91 56830744 ~ 56839626 (+)
LOC110532437 LOC106572423 coding upstream 131390 56661757 ~ 56708327 (+)
LOC110532435 LOC106572422 coding upstream 187633 56645780 ~ 56652084 (+)
LOC110532433 LOC106572420 coding upstream 197734 56590691 ~ 56641983 (+)
LOC110531212 LOC106567287 coding upstream 376170 56246710 ~ 56463547 (+)
LOC110532445 LOC106572414 coding downstream 50705 56914582 ~ 56946999 (+)
LOC110532447 lmod3 coding downstream 83601 56947478 ~ 56948805 (+)
LOC110531214 lmod3 coding downstream 84927 56948804 ~ 56950054 (+)
LOC110531215 uba3 coding downstream 95171 56959048 ~ 56979903 (+)
nfascb LOC106572405 coding downstream 256309 57120186 ~ 57136910 (+)
G822438 NA non-coding upstream 31173 56806388 ~ 56808544 (+)
G822436 NA non-coding upstream 34393 56805114 ~ 56805324 (+)
G822435 NA non-coding upstream 34812 56804680 ~ 56804905 (+)
G822434 NA non-coding upstream 35450 56804054 ~ 56804267 (+)
G822423 NA non-coding upstream 49786 56789698 ~ 56789931 (+)
G822470 NA non-coding downstream 6202 56870079 ~ 56871432 (+)
G822471 NA non-coding downstream 8508 56872385 ~ 56872717 (+)
G822473 NA non-coding downstream 13450 56877327 ~ 56877791 (+)
G822474 LOC106572415 non-coding downstream 14506 56878383 ~ 56878743 (+)
G822481 NA non-coding downstream 27123 56891000 ~ 56891203 (+)
G822404 NA other upstream 76177 56762625 ~ 56763540 (+)
G822283 NA other upstream 266760 56572607 ~ 56572957 (+)
LOC110532427 LOC106572343 other upstream 706781 56125754 ~ 56132936 (+)
LOC110532426 NA other upstream 715532 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 776062 56061706 ~ 56063655 (+)
LOC110532462 LOC106572392 other downstream 478524 57342345 ~ 57958962 (+)
G823373 NA other downstream 1164742 58028619 ~ 58028857 (+)
G823467 NA other downstream 1341386 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1383237 58216176 ~ 58250307 (+)
LOC110532478 LOC106572378 other downstream 1524794 58385510 ~ 58390570 (+)

Expression

LOC110532441(LOC106572418) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110532441(LOC106572418) Expression in each Bioproject

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LOC110532441(LOC106572418) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network