Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110532447 |
| gene name | lmod3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 56947478 ~ 56948805 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lmod3 | Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3). |
| description |
|---|
| leiomodin-3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021616357.2 | True | 949 | mRNA | 0.45 | 2 | 56947478 | 56948805 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532445 | LOC106572414 | coding | upstream | 479 | 56914582 ~ 56946999 (+) |
| LOC110532441 | LOC106572418 | coding | upstream | 83601 | 56839717 ~ 56863877 (+) |
| LOC110532442 | eif4e3 | coding | upstream | 107852 | 56830744 ~ 56839626 (+) |
| LOC110532437 | LOC106572423 | coding | upstream | 239151 | 56661757 ~ 56708327 (+) |
| LOC110532435 | LOC106572422 | coding | upstream | 295394 | 56645780 ~ 56652084 (+) |
| LOC110531215 | uba3 | coding | downstream | 10243 | 56959048 ~ 56979903 (+) |
| nfascb | LOC106572405 | coding | downstream | 171381 | 57120186 ~ 57136910 (+) |
| mfsd4ab | mfsd4a | coding | downstream | 269190 | 57217995 ~ 57223278 (+) |
| LOC110532457 | LOC106572399 | coding | downstream | 292528 | 57241333 ~ 57244702 (+) |
| LOC110532462 | LOC106572392 | coding | downstream | 393540 | 57342345 ~ 57958962 (+) |
| G822463 | NA | non-coding | upstream | 2665 | 56944296 ~ 56944813 (+) |
| G822483 | LOC106572415 | non-coding | upstream | 40270 | 56892691 ~ 56907208 (+) |
| G822482 | NA | non-coding | upstream | 55499 | 56891714 ~ 56891979 (+) |
| G822481 | NA | non-coding | upstream | 56275 | 56891000 ~ 56891203 (+) |
| G822474 | LOC106572415 | non-coding | upstream | 68735 | 56878383 ~ 56878743 (+) |
| G822870 | LOC106572406 | non-coding | downstream | 145633 | 57094438 ~ 57094913 (+) |
| G822888 | NA | non-coding | downstream | 201467 | 57150272 ~ 57150495 (+) |
| G822889 | LOC106562530 | non-coding | downstream | 203150 | 57151955 ~ 57152271 (+) |
| G822892 | NA | non-coding | downstream | 206088 | 57154893 ~ 57155201 (+) |
| G822899 | NA | non-coding | downstream | 216116 | 57164921 ~ 57165144 (+) |
| G822404 | NA | other | upstream | 183938 | 56762625 ~ 56763540 (+) |
| G822283 | NA | other | upstream | 374521 | 56572607 ~ 56572957 (+) |
| LOC110532427 | LOC106572343 | other | upstream | 814542 | 56125754 ~ 56132936 (+) |
| LOC110532426 | NA | other | upstream | 823293 | 56119005 ~ 56124213 (+) |
| G821409 | pacsin1 | other | upstream | 883823 | 56061706 ~ 56063655 (+) |
| G823373 | NA | other | downstream | 1079814 | 58028619 ~ 58028857 (+) |
| G823467 | NA | other | downstream | 1256458 | 58205263 ~ 58244984 (+) |
| G823459 | LOC106572386 | other | downstream | 1298309 | 58216176 ~ 58250307 (+) |
| LOC110532478 | LOC106572378 | other | downstream | 1439866 | 58385510 ~ 58390570 (+) |
