nfascb (LOC106572405)


Basic Information

Item Value
gene id nfascb
gene name LOC106572405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 57120186 ~ 57136910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616365.2
TTCAACAGGATCGGTGAAGGTCATTCACTGTAGAGATGGGGATGCTGGCCAGATCCACTCTATTACTACTGTTATGGCAAGGACTGTCTGCCATTGACGTCCCACTGGAAATCAGACAGCCCCCCACCATTATAAAACAGTCGTTGAAGGATCATGTCGTGGACCCCAGAGACAACATGGTCGTTGAGTGTGAAGCCAAAGGCACCCCCCACCCAATTTTCTCATGGAGGCGTAATGGGAAGTATTTCAATGTGGCACGGGACCCTCAGGCCTCGATGAGGAGACGTTCGGGGACGCTGGACATCTATGCCTGGGCTGACCCGGAGGCTTATGAGGGGGAGTACCAGTGTGTTGCCACCAATGAGTATGGCACTGCATACTCAAACAAGATCAACCTACGCATCTCTAGGGCCCCTCTGTGGCCCAGAGAGGTTTTGGAACCGGTAACGGTGAGTGTTGGTCTTCCTCTGGTCCTGGACTGCAGCCCTCCTCCAGGCCCTCCCAAACCTGAGACCTATTGGATGAGCAAGTGTTCATCAGGGAGACCTTTCAACTGGCCTCACCAGCCCCACCCCCCAGTCATGCTGCCTATCAAACAAGACCGTAGAGTGTCTATGGGGGTGAATGGAGATCTCTACTTCTCTAATGTCTACGTCAATGACTCTGCCACTGACTACTGTTGCAACGCTCGCTTCCCCTACAAAAACATAATTCAACAGAAGATGCCTATTACCGTTAGAGTCCTTACAACCCGCATGGTGTCAGAGGCCGCTCCCACCTTCCTGTCTCCAGCCGGGAGGTCCAGCTCCCAGACTGTCCTGCAGGGGGAGGAGCTGCTCCTCGAGTGCATCGCTGCTGGAGTTCCAACCCCTGTCATCACATGGACCAAAGATGGACAGGAACTGGACACGACCAACATGAAGGTGAAGAACTACAACAAGTTACTGCAGATCCCCAAGGCCGCTTTTgaggactctggtgaatacacgTGCAGTGCCACAAACAAGATTGGATACTTGGAACACACCATCACTGTCCGGATCAAAGCTGCTCCGTTCTGGTTGGAAAAGCCCAGTAACCTGGTGCTGGCCCCAGAGGAGAATGCACGCTTAGTGTGCCGCTCTGACGGCATCCCCCGGCCCAGTATCCGTTGGTTCATCAATGGAGATACAATGGAGGATGCTACTCCAGTCCCAAACAGGGAGGTGTCCGGAGACACAATTACCTTCCGTTCTGTGACTGTGGCGAACACTGGTGTATACCAGTGCAATGCCtctaaccagtatggctacctgTTTGCCAATGCTTACATCAACGTACTGCATGCAAAGCCACGTATCCTTAGGCCTAGGACTGACCTGGTGAAGGTCATTGAGGGCAGACGCGCCTGGCTAGACTGCCGCTATTTTGGCTCGCCCGTGCCTGATCTGCGCTGGTCTAAGTATGGACTGGGCAACCTGGAGGGGAATCGCTTTAAAGTACACAGCAACGGGACACTACAGATCAAAGGCACCCgtatggatgaccaggggtcatatgtgtgtgttgtcagcaACGTAGCAGGACGAGATGAAAACGAGGTCAAACTAGAAGTCAAAGAGTCCACCAAAATTCTCAAACGCCCAGATAATATGAGAGTCCTCCGGGGGACTGATGTCCGGTTGGAGTGTAAGGCCCAACATGACCCCACGGTCGCCGTCACCACCACCTGGCTGAAGAACAAACAGTTCCTCATCATAGGCTGGAGGCTGTCGCTGGATGAATCAACTCTGGTCATCACAAACGTCAATAGAGGAGACGAGGGCAATTACACCTGCATCATCAAGACTGAGATGGACAAGAACACTGCCTCCGCCCGCCTGGTGGTGATGGATCGTCCAGACCCCCCTACAAACTTGCAGTTGTCGGACCCCTTTGAGCGCAGCGTCAGGCTTACCTGGACCCCTGGAGATAGCAATCACAGTCCTATCAAAGAAAACCTGGTGCAGTATGATGATGACGACTGGTTACCTTTCAAGTGGAGAAACCTTTCCACGTACCCTGGAAACCTGAACTCTGTCATTCTGCAACTGTCACCATTCATTATCTATGAGTTTAGGGTCATTGCTATCAATGACATTGGTATGAGTAAACCCAGTCGCTCGTCAGCCAACTTCCAGACTGGTGGAGCACCTCCAGACGCCATCCCTAAAAACATCCAGGGAGTGGGAACATGGAGAAACAACATGATGATCAGCTGGGAGGCATTAAACAACAGAGAGTGGAACGGTCCCCACCTAAAGTACTTGGTGTGGTGGAAACGGAGGGATTCCAGGGAGGAGTGGAAGAACGCTACCACTTGGTGGTGTAAATACTACATCTACGACACAGACACCTTCACACCATACGAGATAAAGGTCCAGGCTGTCAATGACTTTGGGATGGGCCCAGAGTCCCCTGTCATCATAGGCTACTCTGGAGAAGACCGTCCCACTGCTGCCCCCCTCAACCTGCGTGTGTCCAGGATAGAGGCCACTAAGGTCACCGTGCACTGGGACCCCGTGGCTCGCAGCAGCATCATGGGAGAATTGAAGGAATACAAGGTCTACTTCTGGCGAGACAGTAGCCAGCTGAGGTGGCTGAGTGTGAGCAGGGCCATGAAGTCTAAAGCCTTTCCAGCCAGCGGGCCGCGTCTCTCTGGTGTCCTGCCGGGACTCATCCCTTACAGCAACTACAAGATGTACATAGTGGTGGCCAACAACCGATACGAGGGACATCCCAGTAACACCATAGAGTTCTCCACTCCAGAGGGAACACCCTCTGCTCCAAGATCCTTCAGAATCCAGCAGAGACATTTGGACATGATCTGGGTGGACTGGGACACTCCTGCAGAGCCCAATGGCATCGTCACCGGATACATACTCAAATATCAGACAGTGAACGCAACTCAGGGGGAAGAATTGCACGTTGAGGGATTTCCCCCAAACACCACCAGTTTTGCTGTTCGCAGATATGATCGCTACACCCGCTATAGATTCACCATAGCAGCACAGACAAGAATCGGAGTAGGAGAGTGGTACACAGAGGAATCACCCCATTATACAACTGAAGCTTATGCTCGGGAGCAGGTGGACCTCTCCACTCAGGGCTGGGTAATTGGTGTGATGTGTGCTGTGGCTCTATTCGTGCTCATCCTGCTGGTCGTCTGCTTTATCAAAAGGAGCCGAGGGGGCAAATACCCAGTACGGGACAAGAAAGAAGTGACATTGGAGCCAGTGGATGACAAAGATCAGGAGGGATCATTTGACTATCGGTCTCTGGAAAGGATAAGTCGTGTCACCACCATTCCCTACTCTGCCCGACGGGAGGAAGAGACTAAAGTTGGCAGGGGCCAGACGACAGTAGACACCATGATGAAACGGACAGATAGTGACGACAGTCTGGTGGACTATGGGGATGGACAGGAGATTGAGTTCAACGAGGACGGCTCCTTCATTGGCCAGTACACTGGACACAAGGAGAGggatgacagagacacagagttcAGTGAGAGCAGGAGCCAGGAAGCCCACTCCCCGATGGCCAACTCCCCCATGAGCCCCATCTATTCATTTGCATAAGGAAACAAGACGTACAATGGGTGTTACACTCAGACTGGGTCCGGAATGAACATTGCCCACTAGCGCCTCTATAAACAGTTGTATATGCGAATCAGACTGGGTCTGGAATGCCCACTGCCCACTAACTGGGGGACAAATCCACCATCTTCTTCAATCCAGGCACACAAGATGATGTGGTTGGAGCCTGGTAGTGTTACTCCATTCTCAAGCTCTGCATTGACACTGGGTTGGTGCTGTAAATGCAATACAGCAGCAATTTAACAAAAATATGAAGGTTACAGTTACAGTCTAGTTACAGTTATGAAGTTGTAAAAAGTACATGCttttcaggtgtattttgtgggtGTGGAAGTGCATGCGTACATGTTGATGTGCGTGTGTAATATTCCTACTAATGGAGAGATATTGACTGAACATTAGGCAGAGGGATACATTGATAAGTTTATCATGTTGATAAAAGCAGTGACACTTGGTAGAGAAACTATTTATATGATAAATATTATTTATATGATGATTTATATGACAGTGGGAGAAAAATATTAATTAACAATTCACTGCTAAGTCACTGGTTTAGGCCTGGCAGGATTGCTAAGGATCCTTTTAACTTTATCTCCACCTGATGGAAGTAAATATAGTACCACCTTTAGGGCTCTGTGCCCTTGATTTGTTTGTCTGTTGCTTTGTCTAAACATTGTTCTGTGAATCTTGGCTGACGTTGTTATTGGTATGATGACACATTGTCATTGTGTACACACATTTCAGGACTGTGGGCTGTTTCAACATCTTTCAAAGCTAGACAGATGTCATCTGTAGCCTTGAAAATGTCTGGACAGCAAATTGTCTACTTTTGGGTGTGAGCAGAAAGTGTCAACACAGACATATCCGTAATATCCCTAAACATATCCCTAATCAATGTCTCTAGGACCATACTGTACCTTTTTTTTCCCTGTGCACTTTTAatttgtgtaattgtaatgtggtGAGCTACAGTATTTAGAAGTTGTAAATGCTATGATAttatttaatcatttatttactttcTGCTTATCATTAATGTTCCTTGTAATTTTGACAATATTAACTGATAGAGATTTACCTTGTACTCATGGTACTCTAATTAATACACAAATAGATTAAAACCCTGTTCTAATGACATGAAATGCTCAAGGCCAGCTGCATTTTTCCATCATGAGTAATAGTGTTGAAAGTACAATATGGAGGAGCAGCAGTACAGTATCATCATGTTCTCAAATGATATGATGCACACGGCATACTGTATATTAACCTTCCAGTCAGGGACTATGAATCTGCAACATCGTCAGTAACATTAGTGGGGGAAAGCTGACAGGTGATTCAGAGCTGTATTTCAGACATAGTTTAGTTTTTTTAACTGTAAATTGTCTCTCCCCTTAATAACCCAGCACttgtgcagtgccttcagaaagtattcacaccccttgacttttccacattttgttgttacagcctgaatgttaAATGGATTAAactgagatgttgtgtcactggcctacacacaacaccccataatgtcagtggaa
>XM_036988443.1
TTCAACAGGATCGGTGAAGGTCATTCACTGTAGAGATGGGGATGCTGGCCAGATCCACTCTATTACTACTGTTATGGCAAGGACTGTCTGCCATTGACGTCCCACTGGAAATCAGACAGCCCCCCACCATTATAAAACAGTCGTTGAAGGATCATGTCGTGGACCCCAGAGACAACATGGTCGTTGAGTGTGAAGCCAAAGGCACCCCCCACCCAATTTTCTCATGGAGGCGTAATGGGAAGTATTTCAATGTGGCACGGGACCCTCAGGCCTCGATGAGGAGACGTTCGGGGACGCTGGACATCTATGCCTGGGCTGACCCGGAGGCTTATGAGGGGGAGTACCAGTGTGTTGCCACCAATGAGTATGGCACTGCATACTCAAACAAGATCAACCTACGCATCTCTAGGGCCCCTCTGTGGCCCAGAGAGGTTTTGGAACCGGTAACGGTGAGTGTTGGTCTTCCTCTGGTCCTGGACTGCAGCCCTCCTCCAGGCCCTCCCAAACCTGAGACCTATTGGATGAGCAAGTGTTCATCAGGGAGACCTTTCAACTGGCCTCACCAGCCCCACCCCCCAGTCATGCTGCCTATCAAACAAGACCGTAGAGTGTCTATGGGGGTGAATGGAGATCTCTACTTCTCTAATGTCTACGTCAATGACTCTGCCACTGACTACTGTTGCAACGCTCGCTTCCCCTACAAAAACATAATTCAACAGAAGATGCCTATTACCGTTAGAGTCCTTACAACCCGCATGGTGTCAGAGGCCGCTCCCACCTTCCTGTCTCCAGCCGGGAGGTCCAGCTCCCAGACTGTCCTGCAGGGGGAGGAGCTGCTCCTCGAGTGCATCGCTGCTGGAGTTCCAACCCCTGTCATCACATGGACCAAAGATGGACAGGAACTGGACACGACCAACATGAAGGTGAAGAACTACAACAAGTTACTGCAGATCCCCAAGGCCGCTTTTgaggactctggtgaatacacgTGCAGTGCCACAAACAAGATTGGATACTTGGAACACACCATCACTGTCCGGATCAAAGCTGCTCCGTTCTGGTTGGAAAAGCCCAGTAACCTGGTGCTGGCCCCAGAGGAGAATGCACGCTTAGTGTGCCGCTCTGACGGCATCCCCCGGCCCAGTATCCGTTGGTTCATCAATGGAGATACAATGGAGGATGCTACTCCAGTCCCAAACAGGGAGGTGTCCGGAGACACAATTACCTTCCGTTCTGTGACTGTGGCGAACACTGGTGTATACCAGTGCAATGCCtctaaccagtatggctacctgTTTGCCAATGCTTACATCAACGTACTGCATGCAAAGCCACGTATCCTTAGGCCTAGGACTGACCTGGTGAAGGTCATTGAGGGCAGACGCGCCTGGCTAGACTGCCGCTATTTTGGCTCGCCCGTGCCTGATCTGCGCTGGTCTAAGTATGGACTGGGCAACCTGGAGGGGAATCGCTTTAAAGTACACAGCAACGGGACACTACAGATCAAAGGCACCCgtatggatgaccaggggtcatatgtgtgtgttgtcagcaACGTAGCAGGACGAGATGAAAACGAGGTCAAACTAGAAGTCAAAGAGTCCACCAAAATTCTCAAACGCCCAGATAATATGAGAGTCCTCCGGGGGACTGATGTCCGGTTGGAGTGTAAGGCCCAACATGACCCCACGGTCGCCGTCACCACCACCTGGCTGAAGAACAAACAGTTCCTCATCATAGGCTGGAGGCTGTCGCTGGATGAATCAACTCTGGTCATCACAAACGTCAATAGAGGAGACGAGGGCAATTACACCTGCATCATCAAGACTGAGATGGACAAGAACACTGCCTCCGCCCGCCTGGTGGTGATGGATCGTCCAGACCCCCCTACAAACTTGCAGTTGTCGGACCCCTTTGAGCGCAGCGTCAGGCTTACCTGGACCCCTGGAGATAGCAATCACAGTCCTATCAAAGAAAACCTGGTGCAGTATGATGATGACGACTGGTTACCTTTCAAGTGGAGAAACCTTTCCACGTACCCTGGAAACCTGAACTCTGTCATTCTGCAACTGTCACCATTCATTATCTATGAGTTTAGGGTCATTGCTATCAATGACATTGGTATGAGTAAACCCAGTCGCTCGTCAGCCAACTTCCAGACTGGTGGAGCACCTCCAGACGCCATCCCTAAAAACATCCAGGGAGTGGGAACATGGAGAAACAACATGATGATCAGCTGGGAGGCATTAAACAACAGAGAGTGGAACGGTCCCCACCTAAAGTACTTGGTGTGGTGGAAACGGAGGGATTCCAGGGAGGAGTGGAAGAACGCTACCACTTGGTGGTGTAAATACTACATCTACGACACAGACACCTTCACACCATACGAGATAAAGGTCCAGGCTGTCAATGACTTTGGGATGGGCCCAGAGTCCCCTGTCATCATAGGCTACTCTGGAGAAGACCGTCCCACTGCTGCCCCCCTCAACCTGCGTGTGTCCAGGATAGAGGCCACTAAGGTCACCGTGCACTGGGACCCCGTGGCTCGCAGCAGCATCATGGGAGAATTGAAGGAATACAAGGTCTACTTCTGGCGAGACAGTAGCCAGCTGAGGTGGCTGAGTGTGAGCAGGGCCATGAAGTCTAAAGCCTTTCCAGCCAGCGGGCCGCGTCTCTCTGGTGTCCTGCCGGGACTCATCCCTTACAGCAACTACAAGATGTACATAGTGGTGGCCAACAACCGATACGAGGGACATCCCAGTAACACCATAGAGTTCTCCACTCCAGAGGGAACACCCTCTGCTCCAAGATCCTTCAGAATCCAGCAGAGACATTTGGACATGATCTGGGTGGACTGGGACACTCCTGCAGAGCCCAATGGCATCGTCACCGGATACATACTCAAATATCAGACAGTGAACGCAACTCAGGGGGAAGAATTGCACGTTGAGGGATTTCCCCCAAACACCACCAGTTTTGCTGTTCGCAGATATGATCGCTACACCCGCTATAGATTCACCATAGCAGCACAGACAAGAATCGGAGTAGGAGAGTGGTACACAGAGGAATCACCCCATTATACAACTGAAGCTTATGCTCGGGAGCAGGTGGACCTCTCCACTCAGGGCTGGGTAATTGGTGTGATGTGTGCTGTGGCTCTATTCGTGCTCATCCTGCTGGTCGTCTGCTTTATCAAAAGGAGCCGAGGGGGCAAATACCCAGTACGGGACAAGAAAGAAGTGACATTGGAGCCAGTGGATGACAAAGATCAGGAGGGATCATTTGACTATCGGATAAGTCGTGTCACCACCATTCCCTACTCTGCCCGACGGGAGGAAGAGACTAAAGTTGGCAGGGGCCAGACGACAGTAGACACCATGATGAAACGGACAGATAGTGACGACAGTCTGGTGGACTATGGGGATGGACAGGAGATTGAGTTCAACGAGGACGGCTCCTTCATTGGCCAGTACACTGGACACAAGGAGAGggatgacagagacacagagttcAGTGAGAGCAGGAGCCAGGAAGCCCACTCCCCGATGGCCAACTCCCCCATGAGCCCCATCTATTCATTTGCATAAGGAAACAAGACGTACAATGGGTGTTACACTCAGACTGGGTCCGGAATGAACATTGCCCACTAGCGCCTCTATAAACAGTTGTATATGCGAATCAGACTGGGTCTGGAATGCCCACTGCCCACTAACTGGGGGACAAATCCACCATCTTCTTCAATCCAGGCACACAAGATGATGTGGTTGGAGCCTGGTAGTGTTACTCCATTCTCAAGCTCTGCATTGACACTGGGTTGGTGCTGTAAATGCAATACAGCAGCAATTTAACAAAAATATGAAGGTTACAGTTACAGTCTAGTTACAGTTATGAAGTTGTAAAAAGTACATGCttttcaggtgtattttgtgggtGTGGAAGTGCATGCGTACATGTTGATGTGCGTGTGTAATATTCCTACTAATGGAGAGATATTGACTGAACATTAGGCAGAGGGATACATTGATAAGTTTATCATGTTGATAAAAGCAGTGACACTTGGTAGAGAAACTATTTATATGATAAATATTATTTATATGATGATTTATATGACAGTGGGAGAAAAATATTAATTAACAATTCACTGCTAAGTCACTGGTTTAGGCCTGGCAGGATTGCTAAGGATCCTTTTAACTTTATCTCCACCTGATGGAAGTAAATATAGTACCACCTTTAGGGCTCTGTGCCCTTGATTTGTTTGTCTGTTGCTTTGTCTAAACATTGTTCTGTGAATCTTGGCTGACGTTGTTATTGGTATGATGACACATTGTCATTGTGTACACACATTTCAGGACTGTGGGCTGTTTCAACATCTTTCAAAGCTAGACAGATGTCATCTGTAGCCTTGAAAATGTCTGGACAGCAAATTGTCTACTTTTGGGTGTGAGCAGAAAGTGTCAACACAGACATATCCGTAATATCCCTAAACATATCCCTAATCAATGTCTCTAGGACCATACTGTACCTTTTTTTTCCCTGTGCACTTTTAatttgtgtaattgtaatgtggtGAGCTACAGTATTTAGAAGTTGTAAATGCTATGATAttatttaatcatttatttactttcTGCTTATCATTAATGTTCCTTGTAATTTTGACAATATTAACTGATAGAGATTTACCTTGTACTCATGGTACTCTAATTAATACACAAATAGATTAAAACCCTGTTCTAATGACATGAAATGCTCAAGGCCAGCTGCATTTTTCCATCATGAGTAATAGTGTTGAAAGTACAATATGGAGGAGCAGCAGTACAGTATCATCATGTTCTCAAATGATATGATGCACACGGCATACTGTATATTAACCTTCCAGTCAGGGACTATGAATCTGCAACATCGTCAGTAACATTAGTGGGGGAAAGCTGACAGGTGATTCAGAGCTGTATTTCAGACATAGTTTAGTTTTTTTAACTGTAAATTGTCTCTCCCCTTAATAACCCAGCACttgtgcagtgccttcagaaagtattcacaccccttgacttttccacattttgttgttacagcctgaatgttaAATGGATTAAactgagatgttgtgtcactggcctacacacaacaccccataatgtcagtggaaA

Function

NR:

description
neurofascin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616365.2 False 5158 mRNA 0.48 26 57120186 57136909
XM_036988443.1 True 5147 mRNA 0.48 25 57120186 57136910

Neighbor

gene id symbol gene type direction distance location
LOC110531215 uba3 coding upstream 140283 56959048 ~ 56979903 (+)
LOC110531214 lmod3 coding upstream 170132 56948804 ~ 56950054 (+)
LOC110532447 lmod3 coding upstream 171381 56947478 ~ 56948805 (+)
LOC110532445 LOC106572414 coding upstream 173187 56914582 ~ 56946999 (+)
LOC110532441 LOC106572418 coding upstream 256309 56839717 ~ 56863877 (+)
mfsd4ab mfsd4a coding downstream 81085 57217995 ~ 57223278 (+)
LOC110532457 LOC106572399 coding downstream 104423 57241333 ~ 57244702 (+)
LOC110532462 LOC106572392 coding downstream 205435 57342345 ~ 57958962 (+)
LOC118966205 NA coding downstream 226522 57363432 ~ 57363486 (+)
LOC110532463 LOC106572391 coding downstream 847279 57984189 ~ 58020592 (+)
G822870 LOC106572406 non-coding upstream 25273 57094438 ~ 57094913 (+)
G822463 NA non-coding upstream 175373 56944296 ~ 56944813 (+)
G822483 LOC106572415 non-coding upstream 212978 56892691 ~ 56907208 (+)
G822482 NA non-coding upstream 228207 56891714 ~ 56891979 (+)
G822481 NA non-coding upstream 228983 56891000 ~ 56891203 (+)
G822888 NA non-coding downstream 13362 57150272 ~ 57150495 (+)
G822889 LOC106562530 non-coding downstream 15045 57151955 ~ 57152271 (+)
G822892 NA non-coding downstream 17983 57154893 ~ 57155201 (+)
G822899 NA non-coding downstream 28011 57164921 ~ 57165144 (+)
G822900 NA non-coding downstream 31228 57168138 ~ 57168355 (+)
G822404 NA other upstream 356646 56762625 ~ 56763540 (+)
G822283 NA other upstream 547229 56572607 ~ 56572957 (+)
LOC110532427 LOC106572343 other upstream 987250 56125754 ~ 56132936 (+)
LOC110532426 NA other upstream 996001 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 1056531 56061706 ~ 56063655 (+)
G823373 NA other downstream 891709 58028619 ~ 58028857 (+)
G823467 NA other downstream 1068353 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1110204 58216176 ~ 58250307 (+)
LOC110532478 LOC106572378 other downstream 1251761 58385510 ~ 58390570 (+)

Expression


Co-expression Network