LOC110532457 (LOC106572399)


Basic Information

Item Value
gene id LOC110532457
gene name LOC106572399
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 57241333 ~ 57244702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474834.2
ataatcatttgttcttaactgacttgcctagttaaatcaaaaatATTGCTGAGGACACTTTTCTGCGAGTTGAGTGTAACTGAATTTTTGCTTGTAACAATCTTGGGCTCAAATGACTGGCAGAGACAAAATAGAAAGGAAACTGTTGGTCTTTATTGCACCAGCCTGCACCTACAGTTGATAGGCTATTAGATATTTAAATGTGTAATTCTCCCTCCGATCTGAGACCGGCAGCAATACAGCGTCTAGTCTGCCGGAAACGcacaagaagaagaaagagACATACAGAGAACACAAATATGCAGACGATTAAATGTGTTGTGGTTGGAGATGGAGCGGTGGGAAAAACCTGCCTTTTGATTTCATACACAACCAACAAATTCCCCTCTGAATATGTACCAACAGTGTTTGATAACTATGCAGTAACTGTCATGATTGGAGGTGAACCTTACACCCTAGGATTATTTGATACTGCGGGTCAGGAGGATTATGACAGGTTACGGCCTTTGAGCTATCCCCAGACTGATGTTTTCCTAGTTTGTTTCTCTAGTGTTTCACCCTCTTCATTTGAGAATGTTAAAGAAAAGTGGGTACCTGAAATCACTCACCACTGTCCGAAGACACCATTCCTGCTGGTTGGAACTCAGATTGACCTGAGAGATGACCCTTCCACAGTAGAGAAGCTGGCCAAGAACAAACAGAAGCCCATCAGCCCTGAGACAGCTGAGAAGCTCGCCCGTGACCTGAAAGCAGTCAAATACGTTGAGTGCTCTGCCCTAACACAGcGAGGTCTGAAGAATGTATTTGATGAAGCTATCCTAGCAGCTCTAGAACCCCCTGAAACCCAGAGAAAGTGCTGTCTGTTTTGACAGCGGTTTTTTCAAATATTTGCTTTGCCTCTGATCGTCTGCTGCGTCTTTTTAATAAAGGACTAAAGAATGTGTTTGATGAGGCAATACTGGCTGCCCTGGAGCCTCCGGAACCCAAGAAGAGGCGCAAATGTGTGCTGCTCTGAGCATTTCCTCTCTTCTATTGGTTAGAGCATTTCATCAACACTACTCGGAGAAAAGCAAACCATTATTGCACAACGTTACTTCACTCCTATTGGTAACTGAcacaaatattttttacaatgttTGCAAAGTAGTGTGTGAACTTAATTGAACTAGATTGATCTCTACTAGAACCTTTGCAATATAACCCTCTTATGTAATAGTACACATCATTCCTAGAGCCATCTCAGTATTTTTCAGTTAAACAGATTGGTGGCTGCATAGTCTTATCAGAAGTGTGGAagggtcacagacacacacagctgatGATTGGGACCAGTGACAACAGGACAAAACAATTTTACCTTCAATACTGTCGGCAATATTCCCCAAgttcttttattttttatgattCCCTTTTTTCAGGTGTATATAATGTTTTCATGAACACCTGAGGTGAACATAAATCCCCTTTCAATTGGGAAAGTGATAATAGATTCTGTAACAGTCGGTAGTAACAATGATATGTTGGTGCCAACCCAGTTACAACATATGCTATGTTTGTCAGGGCAGTATAgtagttttttttgtcttttaaagCAAATGCCTTGTCTGATGTCACATACTCTATTGCATTCTAGGCACTTAAGTCTTTACTGCTCTGAATGAAACAGCTCATTGTTGCAGTGTAAAACCACCATGAGACTTTTGCTTTAGAATTTCACTCCGTTGACAGATTGTTCCTCCTTTGACAGGAACAGAATCTTACAGGATGTTTATTTGTTTTATACAAAAATGTACATCTCCCGTTGTCACAATTTGAGGATAAGTGAATTTCTTGAAATGTATCAACCAAATAAAGTTTAGAATTCTCAAGTGT
>XM_021616383.2
aatcatttgttcttaactgacttgcctagttaaatcaaaaatATTGCTGAGGACACTTTTCTGCGAGTTGAGTGTAACTGAATTTTTGCTTGTAACAATCTTGGGCTCAAATGACTGGCAGAGACAAAATAGAAAGGAAACTGTTGGTCTTTATTGCACCAGCCTGCACCTACAGTTGATAGGCTATTAGATATTTAAATGTGTAATTCTCCCTCCGATCTGAGACCGGCAGCAATACAGCGTCTAGTCTGCCGGAAACGcacaagaagaagaaagagACATACAGAGAACACAAATATGCAGACGATTAAATGTGTTGTGGTTGGAGATGGAGCGGTGGGAAAAACCTGCCTTTTGATTTCATACACAACCAACAAATTCCCCTCTGAATATGTACCAACAGTGTTTGATAACTATGCAGTAACTGTCATGATTGGAGGTGAACCTTACACCCTAGGATTATTTGATACTGCGGGTCAGGAGGATTATGACAGGTTACGGCCTTTGAGCTATCCCCAGACTGATGTTTTCCTAGTTTGTTTCTCTAGTGTTTCACCCTCTTCATTTGAGAATGTTAAAGAAAAGTGGGTACCTGAAATCACTCACCACTGTCCGAAGACACCATTCCTGCTGGTTGGAACTCAGATTGACCTGAGAGATGACCCTTCCACAGTAGAGAAGCTGGCCAAGAACAAACAGAAGCCCATCAGCCCTGAGACAGCTGAGAAGCTCGCCCGTGACCTGAAAGCAGTCAAATACGTTGAGTGCTCTGCCCTAACACAGcGAGGTCTGAAGAATGTATTTGATGAAGCTATCCTAGCAGCTCTAGAACCCCCTGAAACCCAGAGAAAGTGCTGTCTGTTTTGACAGCGGTTTTTTCAAATATTTGCTTTGCCTCTGATCGTCTGCTGCGTCTTTTTAATGTAAAGGAATGTCTATTTGTCAAGTAAATAACCAAGATGCTCTTTTTAAATGCGTGCCCATTAACTTCTTTCATTTCAATGTCGATGTTGTTTACGCCTAGTCATAATAGCCCATACTACCTTGGCCTTCATGGCAAGGATGCTAACCTGTATTTTTCTATGGGAGAGAACATGTCCAGTTGGGCACTTAATTGGCAAGTTTACGTAAGACTGCAGCTGAGTTTGTTTTCCTTTTATAAGACGGTATTACCAGTTGTGGTTACACACTGCAaggtaaaaaatgtatttggTACATTCATGTTTTGTGTTTGCAGAAAGGACTAAAGAATGTGTTTGATGAGGCAATACTGGCTGCCCTGGAGCCTCCGGAACCCAAGAAGAGGCGCAAATGTGTGCTGCTCTGAGCATTTCCTCTCTTCTATTGGTTAGAGCATTTCATCAACACTACTCGGAGAAAAGCAAACCATTATTGCACAACGTTACTTCACTCCTATTGGTAACTGAcacaaatattttttacaatgttTGCAAAGTAGTGTGTGAACTTAATTGAACTAGATTGATCTCTACTAGAACCTTTGCAATATAACCCTCTTATGTAATAGTACACATCATTCCTAGAGCCATCTCAGTATTTTTCAGTTAAACAGATTGGTGGCTGCATAGTCTTATCAGAAGTGTGGAagggtcacagacacacacagctgatGATTGGGACCAGTGACAACAGGACAAAACAATTTTACCTTCAATACTGTCGGCAATATTCCCCAAgttcttttattttttatgattCCCTTTTTTCAGGTGTATATAATGTTTTCATGAACACCTGAGGTGAACATAAATCCCCTTTCAATTGGGAAAGTGATAATAGATTCTGTAACAGTCGGTAGTAACAATGATATGTTGGTGCCAACCCAGTTACAACATATGCTATGTTTGTCAGGGCAGTATAgtagttttttttgtcttttaaagCAAATGCCTTGTCTGATGTCACATACTCTATTGCATTCTAGGCACTTAAGTCTTTACTGCTCTGAATGAAACAGCTCATTGTTGCAGTGTAAAACCACCATGAGACTTTTGCTTTAGAATTTCACTCCGTTGACAGATTGTTCCTCCTTTGACAGGAACAGAATCTTACAGGATGTTTATTTGTTTTATACAAAAATGTACATCTCCCGTTGTCACAATTTGAGGATAAGTGAATTTCTTGAAATGTATCAACCAAATAAAGTTTAGAATTCTCAAGTGT
>XM_021616382.2
cttaactgacttgcctagttaaatcaaaaatATTGCTGAGGACACTTTTCTGCGAGTTGAGTGTAACTGAATTTTTGCTTGTAACAATCTTGGGCTCAAATGACTGGCAGAGACAAAATAGAAAGGAAACTGTTGGTCTTTATTGCACCAGCCTGCACCTACAGTTGATAGGCTATTAGATATTTAAATGTGTAATTCTCCCTCCGATCTGAGACCGGCAGCAATACAGCGTCTAGTCTGCCGGAAACGcacaagaagaagaaagagACATACAGAGAACACAAATATGCAGACGATTAAATGTGTTGTGGTTGGAGATGGAGCGGTGGGAAAAACCTGCCTTTTGATTTCATACACAACCAACAAATTCCCCTCTGAATATGTACCAACAGTGTTTGATAACTATGCAGTAACTGTCATGATTGGAGGTGAACCTTACACCCTAGGATTATTTGATACTGCGGGTCAGGAGGATTATGACAGGTTACGGCCTTTGAGCTATCCCCAGACTGATGTTTTCCTAGTTTGTTTCTCTAGTGTTTCACCCTCTTCATTTGAGAATGTTAAAGAAAAGTGGGTACCTGAAATCACTCACCACTGTCCGAAGACACCATTCCTGCTGGTTGGAACTCAGATTGACCTGAGAGATGACCCTTCCACAGTAGAGAAGCTGGCCAAGAACAAACAGAAGCCCATCAGCCCTGAGACAGCTGAGAAGCTCGCCCGTGACCTGAAAGCAGTCAAATACGTTGAGTGCTCTGCCCTAACACAGAAAGGACTAAAGAATGTGTTTGATGAGGCAATACTGGCTGCCCTGGAGCCTCCGGAACCCAAGAAGAGGCGCAAATGTGTGCTGCTCTGAGCATTTCCTCTCTTCTATTGGTTAGAGCATTTCATCAACACTACTCGGAGAAAAGCAAACCATTATTGCACAACGTTACTTCACTCCTATTGGTAACTGAcacaaatattttttacaatgttTGCAAAGTAGTGTGTGAACTTAATTGAACTAGATTGATCTCTACTAGAACCTTTGCAATATAACCCTCTTATGTAATAGTACACATCATTCCTAGAGCCATCTCAGTATTTTTCAGTTAAACAGATTGGTGGCTGCATAGTCTTATCAGAAGTGTGGAagggtcacagacacacacagctgatGATTGGGACCAGTGACAACAGGACAAAACAATTTTACCTTCAATACTGTCGGCAATATTCCCCAAgttcttttattttttatgattCCCTTTTTTCAGGTGTATATAATGTTTTCATGAACACCTGAGGTGAACATAAATCCCCTTTCAATTGGGAAAGTGATAATAGATTCTGTAACAGTCGGTAGTAACAATGATATGTTGGTGCCAACCCAGTTACAACATATGCTATGTTTGTCAGGGCAGTATAgtagttttttttgtcttttaaagCAAATGCCTTGTCTGATGTCACATACTCTATTGCATTCTAGGCACTTAAGTCTTTACTGCTCTGAATGAAACAGCTCATTGTTGCAGTGTAAAACCACCATGAGACTTTTGCTTTAGAATTTCACTCCGTTGACAGATTGTTCCTCCTTTGACAGGAACAGAATCTTACAGGATGTTTATTTGTTTTATACAAAAATGTACATCTCCCGTTGTCACAATTTGAGGATAAGTGAATTTCTTGAAATGTATCAACCAAATAAAGTTTAGAATTCTCAAGTGT
>XM_021616384.2
gaaagaggtAAGGGAAATCTTTCGAATTACATGTTATCAATCATCAATAGGGTAACAATTGAAATGATACCAACGCTGTTCATGAAGGTGTTTTAGCTATAGACATACAGAGAACACAAATATGCAGACGATTAAATGTGTTGTGGTTGGAGATGGAGCGGTGGGAAAAACCTGCCTTTTGATTTCATACACAACCAACAAATTCCCCTCTGAATATGTACCAACAGTGTTTGATAACTATGCAGTAACTGTCATGATTGGAGGTGAACCTTACACCCTAGGATTATTTGATACTGCGGGTCAGGAGGATTATGACAGGTTACGGCCTTTGAGCTATCCCCAGACTGATGTTTTCCTAGTTTGTTTCTCTAGTGTTTCACCCTCTTCATTTGAGAATGTTAAAGAAAAGTGGGTACCTGAAATCACTCACCACTGTCCGAAGACACCATTCCTGCTGGTTGGAACTCAGATTGACCTGAGAGATGACCCTTCCACAGTAGAGAAGCTGGCCAAGAACAAACAGAAGCCCATCAGCCCTGAGACAGCTGAGAAGCTCGCCCGTGACCTGAAAGCAGTCAAATACGTTGAGTGCTCTGCCCTAACACAGAAAGGACTAAAGAATGTGTTTGATGAGGCAATACTGGCTGCCCTGGAGCCTCCGGAACCCAAGAAGAGGCGCAAATGTGTGCTGCTCTGAGCATTTCCTCTCTTCTATTGGTTAGAGCATTTCATCAACACTACTCGGAGAAAAGCAAACCATTATTGCACAACGTTACTTCACTCCTATTGGTAACTGAcacaaatattttttacaatgttTGCAAAGTAGTGTGTGAACTTAATTGAACTAGATTGATCTCTACTAGAACCTTTGCAATATAACCCTCTTATGTAATAGTACACATCATTCCTAGAGCCATCTCAGTATTTTTCAGTTAAACAGATTGGTGGCTGCATAGTCTTATCAGAAGTGTGGAagggtcacagacacacacagctgatGATTGGGACCAGTGACAACAGGACAAAACAATTTTACCTTCAATACTGTCGGCAATATTCCCCAAgttcttttattttttatgattCCCTTTTTTCAGGTGTATATAATGTTTTCATGAACACCTGAGGTGAACATAAATCCCCTTTCAATTGGGAAAGTGATAATAGATTCTGTAACAGTCGGTAGTAACAATGATATGTTGGTGCCAACCCAGTTACAACATATGCTATGTTTGTCAGGGCAGTATAgtagttttttttgtcttttaaagCAAATGCCTTGTCTGATGTCACATACTCTATTGCATTCTAGGCACTTAAGTCTTTACTGCTCTGAATGAAACAGCTCATTGTTGCAGTGTAAAACCACCATGAGACTTTTGCTTTAGAATTTCACTCCGTTGACAGATTGTTCCTCCTTTGACAGGAACAGAATCTTACAGGATGTTTATTTGTTTTATACAAAAATGTACATCTCCCGTTGTCACAATTTGAGGATAAGTGAATTTCTTGAAATGTATCAACCAAATAAAGTTTAGAATTCTCAAGTGT

Function

NR:

description
cell division control protein 42 homolog isoform X1

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474834.2 False 1872 mRNA 0.40 7 57241333 57244702
XM_021616383.2 False 2184 mRNA 0.40 6 57241335 57244702
XM_021616382.2 False 1719 mRNA 0.40 6 57241346 57244702
XM_021616384.2 True 1554 mRNA 0.40 6 57241606 57244702

Neighbor

gene id symbol gene type direction distance location
mfsd4ab mfsd4a coding upstream 18055 57217995 ~ 57223278 (+)
nfascb LOC106572405 coding upstream 104423 57120186 ~ 57136910 (+)
LOC110531215 uba3 coding upstream 261430 56959048 ~ 56979903 (+)
LOC110531214 lmod3 coding upstream 291279 56948804 ~ 56950054 (+)
LOC110532447 lmod3 coding upstream 292528 56947478 ~ 56948805 (+)
LOC110532462 LOC106572392 coding downstream 97643 57342345 ~ 57958962 (+)
LOC118966205 NA coding downstream 118730 57363432 ~ 57363486 (+)
LOC110532463 LOC106572391 coding downstream 739487 57984189 ~ 58020592 (+)
apex2 apex2 coding downstream 1041743 58286445 ~ 58290128 (+)
LOC110532471 LOC106572384 coding downstream 1054071 58298773 ~ 58321350 (+)
G822933 NA non-coding upstream 10581 57230404 ~ 57230752 (+)
G822866 NA non-coding upstream 71077 57169042 ~ 57170256 (+)
G822900 NA non-coding upstream 72978 57168138 ~ 57168355 (+)
G822899 NA non-coding upstream 76189 57164921 ~ 57165144 (+)
G822892 NA non-coding upstream 86132 57154893 ~ 57155201 (+)
G822960 NA non-coding downstream 31996 57276698 ~ 57277827 (+)
G822983 dcj11 non-coding downstream 94691 57339393 ~ 57341204 (+)
G823125 NA non-coding downstream 326499 57571201 ~ 57571619 (+)
G823156 NA non-coding downstream 382199 57626901 ~ 57645625 (+)
G823202 NA non-coding downstream 467761 57712463 ~ 57713466 (+)
G822404 NA other upstream 477793 56762625 ~ 56763540 (+)
G822283 NA other upstream 668376 56572607 ~ 56572957 (+)
LOC110532427 LOC106572343 other upstream 1108397 56125754 ~ 56132936 (+)
LOC110532426 NA other upstream 1117148 56119005 ~ 56124213 (+)
G821409 pacsin1 other upstream 1177678 56061706 ~ 56063655 (+)
G823373 NA other downstream 783917 58028619 ~ 58028857 (+)
G823467 NA other downstream 960561 58205263 ~ 58244984 (+)
G823459 LOC106572386 other downstream 1002412 58216176 ~ 58250307 (+)
LOC110532478 LOC106572378 other downstream 1143969 58385510 ~ 58390570 (+)

Expression


Co-expression Network