XLOC_002674


Basic Information

Item Value
gene id XLOC_002674
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17016799 ~ 17027111 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006018
cgGCGTCTTCAAATCTGTGGTCTTGAACGTCTAGGTCTTGCACTCACAAATGGAAGGTCTCGTTGAATTTGGGCGCCCAGCTGTTGTTCTTGGATTTGGTGGTGAACTTGCGCTTCTTGTCGCTGAGGTGAGGGCCAATCATGGTGATCTCAACAAACGGCCTGAACATCCCAGACGTCTGCCACTTCAGATCATTAGCAGCTACCACTACACACAAAGACATGACATTCAGCCAACAGAAAATACACTGGTGGGACAGAAAAGTCACTTTAACACAGTAAGTACCTTTAACTGTAACTTTATGCTCTCCTGTGCCCGGGTGAGTGAAGAGATCGATTTGTATGGACACTTCCCCAACTGGTTTATCAACTCCTGAGCCTACAGAAACACATCTTTGCTTTAGCTTTGTTATATAGAGTCAGTTTTTAAGACCTAATTCTCTACTCTAAGACCTAATATAACCTAAAtctcataataaa
>TCONS_00006019
agcgccgGCGTCTTCAAATCTGTGTCTTGAACGTCTAGGTCTTGCACTCACAAATGGAAGGTCTCGTTGAATTTGGGCGCCCAGCTGTTGTTCTTGGATTTGGTGGTGAACTTGCGCTTCTTGTCGCTGAGGTGAGGGCCAATCATGGTGATCTCAACAAACGGCCTGAACATCCCAGACGTCTGCCACTTCAGATCATTAGCAGCTACCACTACACACAAAGACATGACATTCAGCCAACAGAAAATACACTGGTGGGACAGAAAAGTCACTTTAACACAGTAAGTACCTTTAACTGTAACTTTATGCTCTCCTGTGCCCGGGTGAGTGAAGAGATCGATTTGTATGGACACTTCCCCAACTGGTTTATCAACTCCTGAGCCTACAGAAACACATCTTTGCTTTAGCTTTGTTATATAGAGTCAGTTTTTAAGACCTAATTCTCTACTCTAAGACCTAATATAACCTAAAtctcataataaa
>TCONS_00006020
CACACGGAAAGCAAACACTGGCTGATCTTTGGACCCTGGAAGAGGGAAGCGGGTAAAACAGTTGAATGAAGGAATGACGTGGGCGAGTTGTCTGAAAACGGCTACAATTGGTCTTGAACGTCTAGGTCTTGCACTCACAAATGGAAGGTCTCGTTGAATTTGGGCGCCCAGCTGTTGTTCTTGGATTTGGTGGTGAACTTGCGCTTCTTGTCGCTGAGGTGAGGGCCAATCATGGTGATCTCAACAAACGGCCTGAACATCCCAGACGTCTGCCACTTCAGATCATTAGCAGCTACCACTACACACAAAGACATGACATTCAGCCAACAGAAAATACACTGGTGGGACAGAAAAGTCACTTTAACACAGTAAGTACCTTTAACTGTAACTTTATGCTCTCCTGTGCCCGGGTGAGTGAAGAGATCGATTTGTATGGACACTTCCCCAACTGGTTTATCAACTCCTGAGCCTACAGAAACACATCTTTGCTTTAGCTTTGTTATATAGAGTCAGTTTTTAAGACCTAATTCTCTACTCTAAGACCTAATATAACCTAAAtctcataataaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006018 False 479 lncRNA 0.43 2 17016799 17019170
TCONS_00006019 False 483 lncRNA 0.44 2 17016799 17019175
TCONS_00006020 True 570 lncRNA 0.44 2 17016799 17027111

Neighbor

gene id symbol gene type direction distance location
XLOC_002673 NA coding downstream 5901 17006225 ~ 17010898 (-)
XLOC_002672 stoml2 coding downstream 148588 16857529 ~ 16868211 (-)
XLOC_002671 fbn2a coding downstream 521202 16313851 ~ 16495597 (-)
XLOC_002670 si:dkey-184a18.5 coding downstream 949605 16061655 ~ 16067194 (-)
XLOC_002669 aldh7a1 coding downstream 988717 16006905 ~ 16028082 (-)
XLOC_002675 fam166b coding upstream 50066 17077177 ~ 17083377 (-)
XLOC_002676 NA coding upstream 58413 17085524 ~ 17088911 (-)
XLOC_002677 RNF208 coding upstream 75791 17102902 ~ 17103651 (-)
XLOC_002678 BX324123.4 coding upstream 77187 17104298 ~ 17132910 (-)
XLOC_002679 slc5a1 coding upstream 108520 17135631 ~ 17159761 (-)
XLOC_002666 NA non-coding downstream 1292695 15716739 ~ 15724104 (-)
XLOC_002660 CT027832.1 non-coding downstream 1930502 15082410 ~ 15086297 (-)
XLOC_002656 NA non-coding downstream 1974051 15031006 ~ 15042748 (-)
XLOC_002657 NA non-coding downstream 1981839 15032972 ~ 15034960 (-)
XLOC_002684 FP091248.1 non-coding upstream 315254 17342365 ~ 17342481 (-)
XLOC_002685 NA non-coding upstream 410379 17437490 ~ 17442421 (-)
XLOC_002688 NA non-coding upstream 482869 17509980 ~ 17519034 (-)

Expression


Co-expression Network