LOC110532474 (LOC106572383)


Basic Information

Item Value
gene id LOC110532474
gene name LOC106572383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58321601 ~ 58331563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616416.2
TAACACATTGTAGAAGGCAGAAGAGAAACCATCTGCACCATTTCAACTTGTTATTCTAACAGTCAGTGCCTGTTTGAGGAAGAGGACAGAGGCACGTCAATGCTCCGTTTTGATACTACGTAGATATTCTGAGAGGGACTATGAGTCGGGGATCTAAGTCTAAAGGAGTTCAGGAGTTCAGTCCCAGCTCTCTGCTGAGTCCACAGGAGAATGAGAGGCTGGAAGACCTGCTGGGGAGGAGGTGTGCTtcccTGGCCACTACCGTAGCACAGCTGTACATGGCCCTGCCCCACAGTCCCACCTGCTGGAGCCTGCAGCAAACTGGGGTGGCCTGCTTCGTCAAGGACAACCATCGCCGTTCCTACTTCATACGCCTCTTCGATGTCAAGAAAGGACAGCTGATCTGGGAGCAGGAGCTCTATAACCAAATGGTCTATCACTGTGCCCGGCCATTCTTCCATACCTTCGCTGCAGATGACTGCCAAGTGGGGCTGAACTTTGCAGATGAACAGGAGGCTGAAACCTTCCTTAGTGCAGTTGATGAGAAGATCAACCAGAGAAACCGTCAAGTGTCAGAGAAGAAACAGCGCCCCCTGCCTTCCAATGACGGAGGGGGACGACCTCCACTTCCTGGTAAAGCAGGACCTGGCAGTCCCACTTCTCCCTCCATGGTCACCATGGACATCCAGAACCCAGACATCCAGGCTTCACGCTACCGCTCCGTCACACCTGTACCTGCCCCTGCCTTTGTCAGTAAGGGAAAGAAGGACAAGAAAAAGGACAAGAAGAAGAGCAGTAAACTTTCCAAAGCAGACATTGGAGCACCGAGTGGGTTCAAacatGTGAGTCATGTGGGCTGGGACCCCAACAACCTGGACCCTGACCTGAAGAAGCTGCTGTCCTGTGCTGGGATCAGTGAGGCTGAGTTGAAGGATGAGGAGACCTCCCAACTCATCCAACAAGTCATTGAGAACTCAGGCGGCATGGAGGCAGTCAAAAAGGCCATGAACACTGGTCCTGGGCCTCCTCACCCTCCGCCTGGTAGGCAGGGTCCTCTCCCCCCAGTACCAGGGAGCTGTTCCTCCCCTcctgcccctcctcctccacgAGGAGGTCGCTCTGGCCCACTGCCCCCTGTCCCAGGACAGCCAGGGCGTGGCCCGCCCCCCTCCCAGCCCCCTCCTTCACGTGGAGCCCTGCCACCTCCACCCCCGTTAGGCGGCCGAGGTGGACTCCCACCACCTCCACCCTCTGTGTCCCATAGTTCtcttccacctccccctccccctggtCACCATCTCTCCATGCctgcacctcctcctcctgctccatccaCCCCCAGTCGAGGAGGCCCagcacctcctccacctcctcctcccccgccTCCCCCAGCCCAGAGCTCTGGAgactttcctcctcctcctcccccctgtaAAGGTCCCCCACcacctgctcctgctcctgcatcttcaggtggaggtggaggtggaggtggaggtggaggtggaggtggaagaggagCTCTGCTGGATCAGATCCGCCTGGGAAGGAAGCTCAAAAACGTCACAGACAGTCCTGAGCCACCTCCGCCTGCCCAGGAAGACTCAGAGGGTATTGTAGGAGCTCTGATGATGGTCATGCAGAAGAGGAGTAAAGTCATTCACTCCTCTGATGaaggtgaagaagaaggagggtatgatgatgaagatgatgatgaatgGGACGACTGATAAGTGCATTCCGTACTGTATTATTTTCCACTCTGTAACCATGGACTTCAAAGTTAGGTTGATCCAGTTAGATTCAGTCTGCAGCGCTGAAGATCCTCTACCGCAGATTTGTATCTCACCGTGAATGCTGGAACAATGCCTTTAAATGTCAATTGCGCCGTAGTGCGGATCTTCAGCACTATGGATTGAATCTAGCCCTTACACATGGAAAATGTACACCTGAAGAATGCTACAGATAAGGATTGTGTGAAAGGcccaaaggttaaataaataaacagaacgTAGGACAAAGAAGGTTAGATGGGATAATATATCTTTTTATATCTGTCGTTTGAACGTTTCCAGTGTAGGACTCATGCTGAGtatgtacattacattacagtatgttGCTCAATATCATTATAAAAGATGGTGAGGTCTTCTACACACAGTCTTCTTTCTACTTGTTCCCATTCAAATATTTGATATTACTGGAATGTAGTATTATAACTAATATTATGCACACATATGATTTCCCGTCTTAATGTTCTACATGCAGATATTGTGTGTTTTGTGCAAATATAAACAAACATAGGTCACAAAGGCGTTAGAGAGCGCAAGAGTCACCACAATTACGACATCACAAATGGTTTTAGTAGACAAATACATGCATCATACCATACAATTACTATCTCTCAACGTTGAACAATAAGATGTACACATTTCCAAACTGAATAAAGAATGCAAAGACAAA
>XM_021616418.2
TAACACATTGTAGAAGGCAGAAGAGAAACCATCTGCACCATTTCAACTTGTTATTCTAACAGTCAGTGCCTGTTTGAGGAAGAGGACAGAGGCACGTCAATGCTCCGTTTTGATACTACGTAGATATTCTGAGAGGGACTATGAGTCGGGGATCTAAGTCTAAAGGAGTTCAGGAGTTCAGTCCCAGCTCTCTGCTGAGTCCACAGGAGAATGAGAGGCTGGAAGACCTGCTGGGGAGGAGGTGTGCTtcccTGGCCACTACCGTAGCACAGCTGTACATGGCCCTGCCCCACAGTCCCACCTGCTGGAGCCTGCAGCAAACTGGGGTGGCCTGCTTCGTCAAGGACAACCATCGCCGTTCCTACTTCATACGCCTCTTCGATGTCAAGAAAGGACAGCTGATCTGGGAGCAGGAGCTCTATAACCAAATGGTCTATCACTGTGCCCGGCCATTCTTCCATACCTTCGCTGCAGATGACTGCCAAGTGGGGCTGAACTTTGCAGATGAACAGGAGGCTGAAACCTTCCTTAGTGCAGTTGATGAGAAGATCAACCAGAGAAACCGTCAAGTGTCAGAGAAGAAACAGCGCCCCCTGCCTTCCAATGACGGAGGGGGACGACCTCCACTTCCTGGTAAAGGACCTGGCAGTCCCACTTCTCCCTCCATGGTCACCATGGACATCCAGAACCCAGACATCCAGGCTTCACGCTACCGCTCCGTCACACCTGTACCTGCCCCTGCCTTTGTCAGTAAGGGAAAGAAGGACAAGAAAAAGGACAAGAAGAAGAGCAGTAAACTTTCCAAAGCAGACATTGGAGCACCGAGTGGGTTCAAacatGTGAGTCATGTGGGCTGGGACCCCAACAACCTGGACCCTGACCTGAAGAAGCTGCTGTCCTGTGCTGGGATCAGTGAGGCTGAGTTGAAGGATGAGGAGACCTCCCAACTCATCCAACAAGTCATTGAGAACTCAGGCGGCATGGAGGCAGTCAAAAAGGCCATGAACACTGGTCCTGGGCCTCCTCACCCTCCGCCTGGTAGGCAGGGTCCTCTCCCCCCAGTACCAGGGAGCTGTTCCTCCCCTcctgcccctcctcctccacgAGGAGGTCGCTCTGGCCCACTGCCCCCTGTCCCAGGACAGCCAGGGCGTGGCCCGCCCCCCTCCCAGCCCCCTCCTTCACGTGGAGCCCTGCCACCTCCACCCCCGTTAGGCGGCCGAGGTGGACTCCCACCACCTCCACCCTCTGTGTCCCATAGTTCtcttccacctccccctccccctggtCACCATCTCTCCATGCctgcacctcctcctcctgctccatccaCCCCCAGTCGAGGAGGCCCagcacctcctccacctcctcctcccccgccTCCCCCAGCCCAGAGCTCTGGAgactttcctcctcctcctcccccctgtaAAGGTCCCCCACcacctgctcctgctcctgcatcttcaggtggaggtggaggtggaggtggaggtggaggtggaggtggaagaggagCTCTGCTGGATCAGATCCGCCTGGGAAGGAAGCTCAAAAACGTCACAGACAGTCCTGAGCCACCTCCGCCTGCCCAGGAAGACTCAGAGGGTATTGTAGGAGCTCTGATGATGGTCATGCAGAAGAGGAGTAAAGTCATTCACTCCTCTGATGaaggtgaagaagaaggagggtatgatgatgaagatgatgatgaatgGGACGACTGATAAGTGCATTCCGTACTGTATTATTTTCCACTCTGTAACCATGGACTTCAAAGTTAGGTTGATCCAGTTAGATTCAGTCTGCAGCGCTGAAGATCCTCTACCGCAGATTTGTATCTCACCGTGAATGCTGGAACAATGCCTTTAAATGTCAATTGCGCCGTAGTGCGGATCTTCAGCACTATGGATTGAATCTAGCCCTTACACATGGAAAATGTACACCTGAAGAATGCTACAGATAAGGATTGTGTGAAAGGcccaaaggttaaataaataaacagaacgTAGGACAAAGAAGGTTAGATGGGATAATATATCTTTTTATATCTGTCGTTTGAACGTTTCCAGTGTAGGACTCATGCTGAGtatgtacattacattacagtatgttGCTCAATATCATTATAAAAGATGGTGAGGTCTTCTACACACAGTCTTCTTTCTACTTGTTCCCATTCAAATATTTGATATTACTGGAATGTAGTATTATAACTAATATTATGCACACATATGATTTCCCGTCTTAATGTTCTACATGCAGATATTGTGTGTTTTGTGCAAATATAAACAAACATAGGTCACAAAGGCGTTAGAGAGCGCAAGAGTCACCACAATTACGACATCACAAATGGTTTTAGTAGACAAATACATGCATCATACCATACAATTACTATCTCTCAACGTTGAACAATAAGATGTACACATTTCCAAACTGAATAAAGAATGCAAAGACAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K05747 WAS; Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616416.2 False 2463 mRNA 0.51 11 58321601 58331563
XM_021616418.2 True 2460 mRNA 0.51 11 58321601 58331563

Neighbor

gene id symbol gene type direction distance location
LOC110532471 LOC106572384 coding upstream 251 58298773 ~ 58321350 (+)
apex2 apex2 coding upstream 31473 58286445 ~ 58290128 (+)
LOC110532463 LOC106572391 coding upstream 301009 57984189 ~ 58020592 (+)
LOC110532462 LOC106572392 coding upstream 362639 57342345 ~ 57958962 (+)
LOC118966205 NA coding upstream 958115 57363432 ~ 57363486 (+)
LOC110532475 LOC106572379 coding downstream 29210 58360773 ~ 58382911 (+)
LOC110532478 LOC106572378 coding downstream 53947 58385510 ~ 58390570 (+)
LOC110532483 NA coding downstream 74582 58406145 ~ 58407959 (+)
LOC110532485 NA coding downstream 101558 58433121 ~ 58447861 (+)
LOC110532488 LOC106572433 coding downstream 116368 58447931 ~ 58496358 (+)
G823459 LOC106572386 non-coding upstream 71294 58216176 ~ 58250307 (+)
G823347 NA non-coding upstream 202835 58116974 ~ 58118766 (+)
G823409 NA non-coding upstream 227321 58093184 ~ 58094280 (+)
G823397 NA non-coding upstream 245664 58069667 ~ 58075937 (+)
G823378 NA non-coding upstream 282643 58038759 ~ 58038958 (+)
G823549 NA non-coding downstream 3088 58334651 ~ 58334911 (+)
G823551 NA non-coding downstream 4878 58336441 ~ 58336705 (+)
G823496 LOC106567247 non-coding downstream 6180 58337743 ~ 58338492 (+)
G823552 NA non-coding downstream 6931 58338494 ~ 58340182 (+)
G823554 NA non-coding downstream 9840 58341403 ~ 58346542 (+)
G823467 NA other upstream 76617 58205263 ~ 58244984 (+)
G823373 NA other upstream 292744 58028619 ~ 58028857 (+)
G822404 NA other upstream 1558061 56762625 ~ 56763540 (+)
G823580 LOC106567312 other downstream 187656 58519219 ~ 58535643 (+)
LOC110532492 LOC106572441 other downstream 336591 58668090 ~ 58671251 (+)
LOC110531219 LOC106572493 other downstream 352586 58684149 ~ 58720758 (+)
fkb1a fkb1a other downstream 523282 58854845 ~ 58856718 (+)

Expression


Co-expression Network