LOC110532490 (LOC106572439)


Basic Information

Item Value
gene id LOC110532490
gene name LOC106572439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58656277 ~ 58665931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616447.2
AAAGCTCTCTTCTTGTCTCCTCTCGTACATTGCAAACATGGCGTCGTCGCAACATGAACAATACAGCAGTAATGTTGATACTTCAACATCTAGTGTTCAACAGCAAGGAGATAGAAAAGCAGGGGCTGTATCTTTTGGTTTTAGCAAAACTTTAAGTAAATTTAAATCTAGTCGGGATGAAGATATAGATGCAGATGAGCGAGATTATTTAACAGGAGTCGATGGGAAAGAATTGCTAAGtaccAAGCCTGTGGAGAAGCCGAAGGAGCTGATCATTCCACTCATCCAAAGGAACCGCTGGTGCAGCAGGCAGGAAAACAAAGCTGGCCTGGTCCAGGGGCAAGGTGATGGAGGAAGGGTTAAAGCCAAAACACAACCCCCCTCTCAGGAGCAGGACTCAGTGGAATCACAGGCTGTCAAAGAAATTATTGAAGAATCCCAGAGGCTGCTTGACCAGTGGAAAAATGGGGACCAGGCAGACCCCAACCTCACCATCCCCCTGCTGATGCAGAACCAGGCTCCACAGGGGTTTGAGGATGGAGACCACATCAAGTTGGACCTGCGACCAGAGTCTTCCACAGAGGCAGACTATGACAGTGTTCCTGTGGAGGCGTACGGGTTAGCCATGCTGAAGGGGATGGGCTGGAAGGCAGGAGAGGGAATTGGACGGACCTTCAAACAAGATGTGAAGCCTATAGAGCACCAGCTGAGGCCTAAGGGTCTTGGTCTGGGAGCTGATCGCTCCTCCATAAGAGACCTGGAGCCCAGTGGGCCCCGGAGGCCCCCCAAGCCAGGCGATGAGCGGAAGGAGGAGACCCTCGTCCTGGGACCTGGAGGCCATGTGCTGGTTGAGTCTGGAGCACACAAGGACCTTTACGGGAAGATCGAAGGGATTGATCCGGACAATGCACGAGTAATGGTCAAGCTCGCAATTGGTAGCAAGACAGTGACAATCAGTCAATATGCACTGAAACTGGTTGACCGCACAGAATATGACAAAAACTGCAAAGACCTCAGTCGCCTAAGCAGGGCCCACaaagaaaaggagaaagagaaggaacgGCAGAGacgggaagagaaggagaaaaaaaGAAATAATGAAGATGAGAGgaagaaagatggagggaaggaCCAAAGAAAAAGGAAACATCGGGATTCAAGTCAGGACAGAGAGAAGCCTATGGCGAAACTACCCCCTGCTTCATCCCCCTGGCTCCAGAGAGACCTGAAAGTTCGCTTTGTAGATAAAGCTTTCAAAGGGGGAAGATACTACAATTCAAAGATGCGAATAGAGGATGTCTTGACGCCAAACATCTGTGTGTGTCGTACTGAGGAAGGCAGATTCTTAGATGATGTTAAACAGACAATGCTAGAGACCATTGTGCCAAAGAGTGACTCGGACGACATCATGGTTGTACTCGGTGAACACAGAGGGCAGGTGGGCCGTATcctccagagagacagagaccgaagCAGAGCCATGGTGCAGCTGGACAGATATGAGGAGAAAGTCTTCACCCTGGACTATGACTCCATCTGCCATTATGTAGGAGGGGGAGATCACTGACCCCCTCTGGTCTTACCAGCTCAACCAGTGATGCagtggtaaaaaaaaattaaaaaagtgtGTGAAGTAACATTCACTGTACTTTCAATGCATTTCCCCATGTTAGGTGGGTGAACGCTCATGCACAAGTGTGTAaactgtgtttaccctccactacaacaCTGATGTCAACATGCCCCAACGTCCTCTTAGTGGATATGTAATGTCTATATTTTACACTTTGTCATAAAATGCAAGCTTCTCTGTATGTACACTGGGTAACTTGTCATATTGTACCTTTTTTAATAAAATCAT
>XM_036988509.1
gcctcttcactgttgatgctgaaacgggtgttttgcagtaccAAGCCTGTGGAGAAGCCGAAGGAGCTGATCATTCCACTCATCCAAAGGAACCGCTGGTGCAGCAGGCAGGAAAACAAAGCTGGCCTGGTCCAGGGGCAAGGTGATGGAGGAAGGGTTAAAGCCAAAACACAACCCCCCTCTCAGGAGCAGGACTCAGTGGAATCACAGGCTGTCAAAGAAATTATTGAAGAATCCCAGAGGCTGCTTGACCAGTGGAAAAATGGGGACCAGGCAGACCCCAACCTCACCATCCCCCTGCTGATGCAGAACCAGGCTCCACAGGGGTTTGAGGATGGAGACCACATCAAGTTGGACCTGCGACCAGAGTCTTCCACAGAGGCAGACTATGACAGTGTTCCTGTGGAGGCGTACGGGTTAGCCATGCTGAAGGGGATGGGCTGGAAGGCAGGAGAGGGAATTGGACGGACCTTCAAACAAGATGTGAAGCCTATAGAGCACCAGCTGAGGCCTAAGGGTCTTGGTCTGGGAGCTGATCGCTCCTCCATAAGAGACCTGGAGCCCAGTGGGCCCCGGAGGCCCCCCAAGCCAGGCGATGAGCGGAAGGAGGAGACCCTCGTCCTGGGACCTGGAGGCCATGTGCTGGTTGAGTCTGGAGCACACAAGGACCTTTACGGGAAGATCGAAGGGATTGATCCGGACAATGCACGAGTAATGGTCAAGCTCGCAATTGGTAGCAAGACAGTGACAATCAGTCAATATGCACTGAAACTGGTTGACCGCACAGAATATGACAAAAACTGCAAAGACCTCAGTCGCCTAAGCAGGGCCCACaaagaaaaggagaaagagaaggaacgGCAGAGacgggaagagaaggagaaaaaaaGAAATAATGAAGATGAGAGgaagaaagatggagggaaggaCCAAAGAAAAAGGAAACATCGGGATTCAAGTCAGGACAGAGAGAAGCCTATGGCGAAACTACCCCCTGCTTCATCCCCCTGGCTCCAGAGAGACCTGAAAGTTCGCTTTGTAGATAAAGCTTTCAAAGGGGGAAGATACTACAATTCAAAGATGCGAATAGAGGATGTCTTGACGCCAAACATCTGTGTGTGTCGTACTGAGGAAGGCAGATTCTTAGATGATGTTAAACAGACAATGCTAGAGACCATTGTGCCAAAGAGTGACTCGGACGACATCATGGTTGTACTCGGTGAACACAGAGGGCAGGTGGGCCGTATcctccagagagacagagaccgaagCAGAGCCATGGTGCAGCTGGACAGATATGAGGAGAAAGTCTTCACCCTGGACTATGACTCCATCTGCCATTATGTAGGAGGGGGAGATCACTGACCCCCTCTGGTCTTACCAGCTCAACCAGTGATGCagtggtaaaaaaaaattaaaaaagtgtGTGAAGTAACATTCACTGTACTTTCAATGCATTTCCCCATGTTAGGTGGGTGAACGCTCATGCACAAGTGTGTAaactgtgtttaccctccactacaacaCTGATGTCAACATGCCCCAACGTCCTCTTAGTGGATATGTAATGTCTATATTTTACACTTTGTCATAAAATGCAAGCTTCTCTGTATGTACACTGGGTAACTTGTCATATTGTACCTTTTTTAATAAAATCAT

Function

NR:

description
G patch domain and KOW motifs-containing protein-like isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13101 GPKOW; G patch domain and KOW motifs-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616447.2 False 1861 mRNA 0.48 11 58656277 58665931
XM_036988509.1 True 1659 mRNA 0.50 11 58657132 58665931

Neighbor

gene id symbol gene type direction distance location
LOC110532488 LOC106572433 coding upstream 159919 58447931 ~ 58496358 (+)
LOC110532485 NA coding upstream 208416 58433121 ~ 58447861 (+)
LOC110532483 NA coding upstream 248318 58406145 ~ 58407959 (+)
LOC110532478 LOC106572378 coding upstream 266833 58385510 ~ 58390570 (+)
LOC110532475 LOC106572379 coding upstream 273366 58360773 ~ 58382911 (+)
LOC110532492 LOC106572441 coding downstream 2159 58668090 ~ 58671251 (+)
LOC110532491 LOC106572442 coding downstream 5423 58671354 ~ 58674299 (+)
LOC110531219 LOC106572493 coding downstream 18339 58684149 ~ 58720758 (+)
LOC110532493 LOC106572443 coding downstream 62667 58728598 ~ 58741270 (+)
plp2 LOC106572444 coding downstream 79902 58745833 ~ 58755855 (+)
G824495 NA non-coding upstream 14719 58641286 ~ 58641558 (+)
G824487 NA non-coding upstream 19450 58636573 ~ 58636827 (+)
G823587 LOC106572434 non-coding upstream 117285 58537444 ~ 58538992 (+)
G823579 NA non-coding upstream 158439 58496752 ~ 58497838 (+)
G823600 NA non-coding upstream 214058 58442016 ~ 58442219 (+)
G824523 NA non-coding downstream 11762 58677693 ~ 58677980 (+)
G824524 NA non-coding downstream 12264 58678195 ~ 58678429 (+)
G824549 NA non-coding downstream 79362 58745293 ~ 58745534 (+)
G824590 NA non-coding downstream 131951 58797882 ~ 58800399 (+)
G823580 LOC106567312 other upstream 120634 58519219 ~ 58535643 (+)
G823459 LOC106572386 other upstream 405970 58216176 ~ 58250307 (+)
G823467 NA other upstream 411293 58205263 ~ 58244984 (+)
G823373 NA other upstream 627420 58028619 ~ 58028857 (+)
fkb1a fkb1a other downstream 188914 58854845 ~ 58856718 (+)
ppdpfa LOC106572462 other downstream 359269 59025174 ~ 59028152 (+)
LOC118966079 NA other downstream 492650 59158581 ~ 59161748 (+)

Expression


Co-expression Network