LOC110532491 (LOC106572442)


Basic Information

Item Value
gene id LOC110532491
gene name LOC106572442
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58671354 ~ 58674299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616448.2
AAGTAAGCAGCAGTTGATTCTCTTGAACAAGTCCGTAATCGAACACGTTCCTACCGCCGCTTCGAGTAATGGGAGATGTTCCTTTTTAGATTGAATATTGTGAAAATGGACGTGCAGCCGCCTCCTATCCGAACCTTGGATGATTTTGTTTTGGATTCGTCTCGGTTCGCCGTGCGAGACATTCCTCATCTGGAGAGATGGAACAATCGGATCATAAATAACTTGCTCTATTACCAGTCCAACTATTTCGTCTCGTTTTTGACATTCCTGGGAATAGTAGGGTTTTTGCGGCCCTTCCACCTCTTCTTGGGGGCCACAGTGGTGACGTTGATATTTATGGGGTTTGTGTGGGCAGCAGAGAACCAGGCCCCCATCAGACAGTTGCGCCGGAACCACCCATCCCTGGCCCTGGGTGCCATCCTGGGGGCCAGCTTCCTCTTCATCACAGTGCTCGGAGGAGTATCCGTCTTCCTCTTCGGCATAGCCTTCCCCATCTTATTGATACTGATCCACGCCTCTGTTAGGCTGAGGACCCTCAAGAACAAGTTGGAGAACAAGCTGGAGAACATTGGGCTGAAGAGAACACCCATGGGGCTCCTACTGGAGTCACTAGGACAGGAACAGGAGGCTGGGTcctagagggggaggagaggaaggggtagagggaTGCCTGGTTCTATTTCAATCTTTTGCACCTAGCCCTATTCCCAGATCGGAAAGGACTGGATAAATGTTATCAATATGTTGAGCTAAGTTCCTTCACATATCCTGTCCTGATATGTATTCACAGTGGTAGAGGATAGAGACGTAAATGGAACGAGTCCTCTCAGACTAAgagtgggagacagagggaggtggtgagggagggaggctgaggaAAAGTagaagaagagtggagggaagtACAGTAAAGCAGTGGTGAAATTATGATGATATCAAAATGTCACGAATGTGGTGTTACAGATTGCAAATTCTATGGACTCTGCAGCCTTTTTAAAGCACACACTAACTGTCGTGGGTTCTTTCCCCCACAAGTCATGTTGCACACTTTGACAAGCTCCTTATTAGAGTTTGCATTTTATCCTCAGAAAGCTGACATTATGTGAGCTAAAATACTGCGCTGAGAAGCAAATGTGTCCTAACAGACATGCAGTGTGGAGAGTGCTACAATAAGATGGTTTTTAAAATGCAATTTAAACGCCAGCGTTATGGTTACAATTTTCTTTTACATGGAAACCTGAAGGTGTTTGATGAGCCACTACTCTAACTCCTGAACACACTACTTTTTGTGTTATTGTCTATTCTCTACTGCTGTTGGGTTTTACTATTTGATGCAGTTGAAAGTTTCATGGAGTTGGGATAGTTCAAGGACAATTGTGGAACAACTGTATGCTTTTAATAGAAATACAATTAATTATACTTCTATGATGCTATGATTCCAATCATTTTAAAAAGGATTATGTATATGTCTCTGTCCAAGCATTATGTGTTGCCAAGAACATGAATGTCAGTTTGTCTTCATTGTGTAAAATGTTATTCCATTGAGAATGTTGTATTTCTTTTTAGCAGTGCCTTCTATGGATTTATAATATTGTGGTTATGGTTTTTTTCTCCAATGCTGTCAAAATGTATTTACACTTCATTTAATACAAATGCAATATCTTGTCATGATTTTATTTTTCAATCAGCCTATTAAAACTTATTAGATTTGATGATCAAAGTAGAAGAATAGATACATCCTGTCTGCCTGGTCACACAATAACTGAAAACATTTT

Function

NR:

description
PRA1 family protein 2-like

GO: NA

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616448.2 True 1775 mRNA 0.42 3 58671354 58674299

Neighbor

gene id symbol gene type direction distance location
LOC110532492 LOC106572441 coding upstream 406 58668090 ~ 58671251 (+)
LOC110532490 LOC106572439 coding upstream 5423 58656277 ~ 58665931 (+)
LOC110532488 LOC106572433 coding upstream 174996 58447931 ~ 58496358 (+)
LOC110532485 NA coding upstream 223493 58433121 ~ 58447861 (+)
LOC110532483 NA coding upstream 263395 58406145 ~ 58407959 (+)
LOC110531219 LOC106572493 coding downstream 9971 58684149 ~ 58720758 (+)
LOC110532493 LOC106572443 coding downstream 54299 58728598 ~ 58741270 (+)
plp2 LOC106572444 coding downstream 71534 58745833 ~ 58755855 (+)
prickle3 LOC106572445 coding downstream 89366 58763665 ~ 58814538 (+)
LOC110532497 LOC106572446 coding downstream 142705 58817004 ~ 58823053 (+)
G824495 NA non-coding upstream 29796 58641286 ~ 58641558 (+)
G824487 NA non-coding upstream 34527 58636573 ~ 58636827 (+)
G823587 LOC106572434 non-coding upstream 132362 58537444 ~ 58538992 (+)
G823579 NA non-coding upstream 173516 58496752 ~ 58497838 (+)
G824523 NA non-coding downstream 3394 58677693 ~ 58677980 (+)
G824524 NA non-coding downstream 3896 58678195 ~ 58678429 (+)
G824549 NA non-coding downstream 70994 58745293 ~ 58745534 (+)
G824590 NA non-coding downstream 123583 58797882 ~ 58800399 (+)
G824598 NA non-coding downstream 173146 58847445 ~ 58851453 (+)
G823580 LOC106567312 other upstream 135711 58519219 ~ 58535643 (+)
LOC110532478 LOC106572378 other upstream 280784 58385510 ~ 58390570 (+)
G823459 LOC106572386 other upstream 421047 58216176 ~ 58250307 (+)
G823467 NA other upstream 426370 58205263 ~ 58244984 (+)
fkb1a fkb1a other downstream 180546 58854845 ~ 58856718 (+)
ppdpfa LOC106572462 other downstream 350901 59025174 ~ 59028152 (+)
LOC118966079 NA other downstream 484282 59158581 ~ 59161748 (+)
LOC110532530 LOC106572481 other downstream 702807 59374974 ~ 59382411 (+)

Expression


Co-expression Network