LOC110531219 (LOC106572493)


Basic Information

Item Value
gene id LOC110531219
gene name LOC106572493
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58684149 ~ 58720758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986959.1
TCTCCTTGGCTGGCTCGGTTGTCGGGGACAAGTCCGACACCCTTGGCTCTACTGCCTCGGgcaagaagagaggtggaggacagAAGAAGCAGATGCAAGCCAACAAATCTGCTCTCCGAGCTCCCCGAGCTCTCTGCTGCCTCACCCTCAGTAACCCCATCCGCATGGCTGCCTTGGCCCTTGTTGAATGGAAATATCCTTCAATGatACCTTTTGATATCTTCATTCTACTTGCTATCTTTGCCAACTGTGTGGCCCTCGGTGTATCTAAACCCTTCCCAGAGGAGGACTCCAATTCCACCAACCACAACCTGGAACAAGTTGAGTACATCTTCCTAGTTATCTTTACCATTGAGACCTTCACTAAGATCCTGGCCTATGGCTTGGTTATGCACCCCAGCGCCTACATCCGCAGTGGCTGGAATTTGCTTGATTTTGTCATCGTCGTCGTCGGGTTGTTCAGTGTGGTTGCTGAGGGGACGGCTGACCACAAGCCTGGAGATTCCCACCATGCAGCAGGCAAACCAGGAGGACTGGATGTCAAAGCTCTTAGAGCCTTTAGGGTGCTGCGACCCCTTAGGCTGGTGTCTGGAGTGCCcaGTCTCCAGATTGTCTTGAACTCCATCATGAAAGCCATGGTTCCCCTGCTGCACATTGGTCTGCTGGTCATGTTTGTCATCATCATCTATGCCATTATCGGCCTGGAGCTCTTCCTCGGCAGGATGCACAAAACCTGTTTCTACGTGGGCACAGAACTGAACGTGGATGATGACCCCACACCGTGTGCATTTGCTGGAAATGGGAGGGAATGTGTGGGCAACGGGACAGAGTGCAGAGGACCGTGGGAGGGGCCTAACGGTGGGATCACCAACTTCGACAACATATTTTTTGCCATGTTGACTGTGTTCCAGTGTATCACCATGGAGGGCTGGACCGATGTGCTCTACTGGATGAATGATGCAATTGGCTTTGAGATGCCCTGGGTTTACTTTGTCTCTCTGGTCATCTTTGGCTCGTTTTTCGTACTCAACCTTGTATTGGGAGTGTTGAGCGGagAGTTCTccaaggaaagagagaaggctgTGGCTCGTGGAGAGCTGCAGGACGCCCAGAATAAGAAGCAGATGGAGGAGGATATGTGTGGATACATGGACTGGCTCATCGAGGCCGAGGATGTGGATGAGGAAGGAAACAAACGTATGCCTGTTTCTGACCCTTCCGCTCCTCATATAACGTGTCTACTGATTCTCTCCTCGCTCAGTGACCAGCTATGCCAACTGAACCATGCCTTTCGGAAAAACTGTCGTGTAGCAGTCAAATCCCAGAACTTCTATTGGCTGGTGCTCCTTCTGGTGTTTCTCAACACTGCAGCCAGCGCCTCTGAACACTACGGCCAGCCCAAGTGGCTCACCGAGATGCAGGAGCGGGCCAATAAGATCCTCTTGATGTTGTTCACGCTGGAGATGCTGTTGAAGATGTACAGTTTCGGTTTCCAGATCCACTTCTTGGCTCTGTTTAACCGCTTCGACTGCtttgtggtgtgtggtggcatCCTGGAGACGGTCCTGGTTGAGTTGCAGATCATCCCTCCCATCGGCATCTCTGTGCTGCGCTGTGTCCGCCTGCTCAGGGTGTTCAAAGTGACACGGCACTGGGCAGCCCTGTCAAACCTGGTCAATTCACTGCTCAACTCCATGAAGGCTATCtgctctctactgctcctgctctTCCTCTTTCTAATCATCTTCTCCCTGCTGGGTATGCAGCTGTTTGGGGGCAAATTCAACTTTGATGAGACTCAGATGAAGAGGAGCACGTTTGACACTTTCCCCCAGGCCCTGCTCACCTGCTTCCAGATCCTTACAGGAGAGGACTGGAATGCAGTGATGTATGATGGGATCATGGCTTATGGCGGGCCAGTCTTCCCACAGATGATCGTGTGCATCTACTTTGTCTCCCTCTTTGTTGTCGGTAACTATATCCTGCTCAATGTCTTCTTGGCTATCGCTGTGGACAATTTGGCAGGAGATGGGGGAAAAAAGAAAGTAGAagagaaaaaggaggaggaagaggactggGACGATGACGAAGACAAAGAGGAAGATGCAGCGgagaatgaggagttgAGAGCCATTGAGGgaaTTATGCCTGTGAAGCCTGAATTTTCCGCTCCAAAAGAGAAGATTGAACCCATTCCAGATGGTAGCTCCTTCTTCATTCTTGGAAAGAGAAACTGcctCCGAGTGGCCTGTCACAACCTCATCCACCACTCCTACTTCACCAACCTCATCCTTGTCTTCATCATTGCCAGTAGCATTTCTCTGGCTGCTGAGGATCCAATCAGAGCTCACTCCTTTAGGAACAACATGCTTGGCTATGCTGACTATGCATTCACCTCCATATTCACTGTGGAAATTATATTGAAGGTGACAGTTTTCGGTGCGTTCCTTCATCCTGGATCGTTCTGTAGGAATGCCTTTAATCTTCTGGACCTACTGGTTGTCAGTGTGTCGCTCGCGTCCTTCTTCCTCCATTCCAGCGCTATCTCTGTGGTCAAGATTTTCAGGGTACTCAAAGTGCTCAGGCCTCTTCGAGCAATCAACAGAGCTAAAGGACTCAAGAATGTAGTGCAGTGCGTGTTTGTGGCAATCAAAACAATCGGAAACATCTTGATCGTCACAACGCTCCTCCAGTTCATGTTTGCCTGTATTGGAGTGCAGCTCTTCAAGGGAAGATTCTACAGTTGCACTGATGAAGCTAAACACACTCCATATGAGTGCATGGGAACGTTTGTGGTGTATAAGGACGGTGATATGAATCACCctatggtgagagagaggaaatggcAAAACGGTGAATTCAACTTTGACAATGTGCTGCAGGGCATGCTGGCCCTGTTCACTGTGTCTACATTTGAAGGCTGGCCGCAGCTGCTGTACAAGGCCATCGACGCCAATGCAGCGAACCATGGCCCTATTTACAACTACCGTGTGGAAATCTCCATATTCTTCATcatctacatcatcatcatcgccTTCTTCATGATGAACATCTTCGTGGGCTTCGTCATCATCACGTTCCGTGAACAGGGAGAATCTGAGTTCAAAAACTGTGAACTGAACAAAAATCAAAGGCAATGTGTACAGTACGCTCTGAAAGCCAAGCCCATCAAGATCTACATTCCCAGAAACCCATCCCAGCTAAAGTTCTGGAAAATCATCGCCTCCAGCCAGTTTGAGTACATCATGTTTGTCTTAATTCTTCTCAACACCCTCACCTTGGCTGTACAGCATTATGAGCAGTCTAAAACATTCAACTCTGTGATGGACATCCTCAACTTGATCTTCACAGCCCTATTTACCATAGAGATGGTCATCAAGCTACTGGCTCTCAGAACACATCAATATTTCATTGATGCTTGGAACACCTTTGATGCTCTGATAGTTGTGGGCAGTGTGCTAGACATCATGGTCTCAGAGCTTAGTGTGACTGTAGCTGTACCTGGAGCACCGCCCGGGGCCAAGAAGGAAAGCGGAAAAGTATCCATCACATTCTTCCGTTTGTTCCGAGTCTTGCGATTGGTCAAGCTGCTCAGCAAAGGGGAGGGCATTCGAACCCTCCTCTGGACTTTTGTCAAGTCCCTCCAGGCCTTGCCATATGTCGGTCTCCTTATTGCTATGATCTTCTTCATCTACGCTGTGATCGGCATGCAGACATTTGGAAAGATTGCTATAGATGACAACTCGCATATCAACAGGAACAACAACTTTCAGACCTTCTTCATGTCTGTCCTACTGCTCTTCAGGTGTGCAACCGGAGAGCAGTGGCAGGAGATCATGTTGGCAGCGTTGCCAGGGAGACGCTGTGACCCCGAGTCAGACTTTGAGCCCGGGGAGGAGAGCATGTGCGGCAGCAACCTGGCCTACATCTACTTCATCAGCTTCTTCATGCTCTGCGCTTTCCtgATCATTAACTTGTTCATTGCtgtcatcatggacaactttgaGTACCTGACCAGGGATTGGACCGTACTGGGTACTCATCACCTGGACGAGTTCAAACGAGTCTGGTCGGATTATGACCCAGAGGCCACGGGTCGAATCAAACATATCGATGTGGTCACTATGCTGCGCAGGATCCAGCCACCCCTTGGTTTTGGCAAACTGTGCCCCCATCGTGTGGCCTGCAAGAGGCTGGTTGCTATGAACGTGCCGCTGCACAGCGATGGGACAGTCACCTTCAACGCTACCCTGTTTGCGCTGGTCAGAACCTCACTCAAGATCAAGACTGACGGGCCTGTTGACCAGGACAACGAGGAGCTCAGGGCCATCATTAAGAAGATATGGAAGCGCACTAAACCCAAGCTCCTTGAAGAGGTCATTCCACCCCCTAGAGGGGAAGAGGTGACTTGTGGGAAGTTCTATGCCAGCTTCTTGATCCAGGACTACTTTAAGAAGTTCCGCAAGAGGAAGGAgcgggagaggaagaagaagggaaAGGACAAGAAAGACTCTCTCCAGgcaggGCTACGGTCACTGCAGGCACTTGCCCCAGAGTTGCATCTGGCCTTGgcaatggagggagaggaagaggagggtatgGAGGGAGAGTTGGACGAAGAGTTTTTCAAAAATGAAAATGTTTTTGAAGATCCAGGCACCTCTGCCACCAATACTTCATCCACCACTCCCATACCAGGTGACTTGGAGGAGTCCACCACCATCGTTTTCATGGAGCCCTTCATGGAGCCCACTATATTCAGCGACGTGGTCACAGAACAGCCATTAACAACCAGTGAGAGATCAGAATCAGCTCTGTCATCCTTTGATGTGGTGGTTGAACAGCCAACGAGATCTGAGGCCCTCCTTCCACCAGAAGAAGCACCAGCCGCATCACCACCAAAAGATCCATCCCCTCCCCAACCAGCACCGAACCCATCCCCACCACAGGCCCCATCCCCTCCCCAACCAGCACCAGCCCCACCCCCACCACAGGCCCCATCCCCTCCCCAATCAGCACCAGCCCCAGCCCCACCACAGGCCCCATCCCCTCCCCAACCAGCACCAGCCCCACCCCAACCAGCACcagccccacccccacccccaccacagaTTGCTTCTCCGCCACAAATGGTTGCCCAATCCCAACCTCAAATAGTGATAGCCCCACCAGAACCAGAGGCAGCTCAAATAGTGTTAGAGGCAGCCGCTGCCCCACCTCAACCAGAGCTagtgatggagggaagaggaggtgAAACTTATGCTGCACACCAGGTGTACTACCAACAGTACCCAGTGGGCATGCTAACAAACGACGGGTATGCATATCAAGAGCAACCTGCAGTATCCCATATCCCACCAGAGTACATGCAGAGTCATGCTCCTAACTTCACCAATGGCAGTGTTGCAGGAGTACCCTACGGAAATGGAAATGGCATGAATGGGAATGGCTATAATGGCGCTATGAATGGTATGAATGGAGGTAGCATGAGTGGCTACACCGGTAATGGTTACATAGGAAACGGCTACAATGGAAACGGCTACAATGGCAACGGCTACAATGGAAACGGATTGGAGCCGTATGTCCGGAGACGTGTTCTTCCTCCCACTCCTGCAGGTCGTAAGCCGCCCTCCTTTAACATCCAGTGTCTGCGGGCACAGCATAGCGCGGGTGACATCCCCATCCCTGGCACATATGAGAGTAACTCACCCCCATGCAGATCCAGACtgACCCTTGACTCCCGCCGCAGCAGTGTCTCCTCCATATCCTCGGCCTCCTGGGCCAACAATGGAGGAGGACCTGCAGGGTCAATGCCAGGAGCAGGGGTGTCAGCAACATCAGCAGCCGCAAAGAGAGGGCGTCTGCTCTACGCCCCTCTGATGCTGGTGGATGAGGCCGGGGGCACCCAGCAGCTGTGGGGAGACAGGACCCAGGCCACCTCCAGCCTCCCTGCTATTGCAACTAGGCCCAGTGGCTGGTACCCTGGAGCCCCAACACTCCCCATGCACACGCCACAGAACAGGAGCTACATCAACGGCAGAGTGCCCTCCCAGATCAGCCAAAGACTCATAGAGAAAGGCAGTGCAAACAGCTTGGTGGAGTCGATCCTGATATCAGAAGGCTTGGGCCTCTATGCAAGAGACCCAAAGTTTGTGAACTTCGCCAAGCGGGAGATCGCTGACGCATGTAACATGACCATTGATGAGATGGAAAACGCAGCAACAGATCTGCTGACCCGTTCTACTGGACAGCCAATAGGACGCTTTGAGGAGGAGCTGGCAGATGAGATGAACTGTGTGATTTCCTactgagagagaggaaacagagagagagagggagggaggtagggagagtaggAGGGCAATGAGATAGAGCCTTACCTCTCCATCAACATGGGGGGGGGGTAAGAATGCTGTCCCAAGCTATTGATCTTAGGAAACGGTCTATATCTCTTTGATCATGCTATTTTTCTTTTCCAGATCTTCTCAGTTAATTTGGCTTTGTTGAAAGCATCAGTGTGTCTTGAACAAGAGTCTGAAAGAACCATTGTGAATTAGACAGCATATACAGTACAGAGCCCAACTATTGAGGTTTGGCCTCAATACTCTTTACACATTATTCTAATGTAAGAGTGTACTGTACTATAGCCTGCCGAACATGATTGCAATTCGTATTCTACTATGAAGTAGTTTAGCGCTATTTTCAAAAGCGGCATTTTTGGATTGTATTTCCATTTTTGGTACTGTTCTAGAATTGCTGTCACTTATACACCCAAATCATACAATAACCCTGCTAGGGTCATAAAAACATATTAAAAGCTGGCataaatcaacaaaaaaatatatatagtacctGTCTATAGTTCAAGTGAGCTCCACTTGTAACCATAGATAATGAAAATGGGTTTATGTGTGTCATGTCAGTTGCCCAGTGAAGCATTAGCATAGCATTAACAGTAGACTTTTGAACCATGTCATGTCAAATGAACCTTTCTAGTgcaggggttccgctagcagaacacctcgacaacattccgctgaagaGGCAGCtcacgaaattcaaaaatatttttttgaaatatgtaactttcacacatg
>TU937515
aaatgataCACAACACCGTATACACACAGTAGTGCATAGTAACTACATAGCAATAACCTAGAAAATACATTTGATGAATGAATGGTGACTatcttccctctgtctcctgcAGAGGATGGCATCTCCTTGGCTGGCTCGGTTGTCGGGGACAAGTCCGACACCCTTGGCTCTACTGCCTCGGgcaagaagagaggtggaggacagAAGAAGCAGATGCAAGCCAACAAATCTGCTCTCCGAGCTCCCCGAGCTCTCTGCTGCCTCACCCTCAGTAACCCCATCCGCATGGCTGCCTTGGCCCTTGTTGAATGGAAATATCCTTCAATGatgtacctctgtgtgtgtgtgaacgcatGTGTGCc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986959.1 False 7097 mRNA 0.50 42 58684270 58720758
TU937515 True 362 TUCP 0.50 1 58684149 58684510

Neighbor

gene id symbol gene type direction distance location
LOC110532491 LOC106572442 coding upstream 9971 58671354 ~ 58674299 (+)
LOC110532492 LOC106572441 coding upstream 13322 58668090 ~ 58671251 (+)
LOC110532490 LOC106572439 coding upstream 18339 58656277 ~ 58665931 (+)
LOC110532488 LOC106572433 coding upstream 187912 58447931 ~ 58496358 (+)
LOC110532485 NA coding upstream 236409 58433121 ~ 58447861 (+)
LOC110532493 LOC106572443 coding downstream 7840 58728598 ~ 58741270 (+)
plp2 LOC106572444 coding downstream 25075 58745833 ~ 58755855 (+)
prickle3 LOC106572445 coding downstream 42907 58763665 ~ 58814538 (+)
LOC110532497 LOC106572446 coding downstream 96246 58817004 ~ 58823053 (+)
LOC110531221 NA coding downstream 101374 58822132 ~ 58843304 (+)
G824524 NA non-coding upstream 5841 58678195 ~ 58678429 (+)
G824523 NA non-coding upstream 6290 58677693 ~ 58677980 (+)
G824495 NA non-coding upstream 42712 58641286 ~ 58641558 (+)
G824487 NA non-coding upstream 47443 58636573 ~ 58636827 (+)
G824549 NA non-coding downstream 24535 58745293 ~ 58745534 (+)
G824590 NA non-coding downstream 77124 58797882 ~ 58800399 (+)
G824598 NA non-coding downstream 126687 58847445 ~ 58851453 (+)
G824616 NA non-coding downstream 139372 58860130 ~ 58861007 (+)
G824617 NA non-coding downstream 140369 58861127 ~ 58863014 (+)
G823580 LOC106567312 other upstream 148627 58519219 ~ 58535643 (+)
LOC110532478 LOC106572378 other upstream 293700 58385510 ~ 58390570 (+)
G823459 LOC106572386 other upstream 433963 58216176 ~ 58250307 (+)
G823467 NA other upstream 439286 58205263 ~ 58244984 (+)
fkb1a fkb1a other downstream 134087 58854845 ~ 58856718 (+)
ppdpfa LOC106572462 other downstream 304442 59025174 ~ 59028152 (+)
LOC118966079 NA other downstream 437823 59158581 ~ 59161748 (+)
LOC110532530 LOC106572481 other downstream 656348 59374974 ~ 59382411 (+)
G824936 NA other downstream 693389 59414147 ~ 59415013 (+)

Expression


Co-expression Network