LOC110532493 (LOC106572443)


Basic Information

Item Value
gene id LOC110532493
gene name LOC106572443
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58728598 ~ 58741270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988511.1
CCCCCCGTGGGCTGTTCCGGATGTAACGCCTCCCTCCAGCCTACCGGCTGATCCTCTTATCGACAAGCAGGCGGCCAAGATGGATGTTGTGAACCAGTTGGTGGCCACCGGGCAGTTCACCATAATCAAACAGCCTTTGGGATTTatgaaaatcctacaatggATCTTTGCCATCTTTGCTTTCTCGACATGCGGCAGCTACTCTGGCATGTTCAAGATGAGTGTGGAGTGTAAAAACCGGTCAGAGAGTGACCTGAGCATTGAGGTGAAGTTTGAGTATCCATTCAGGCTACATCAGGTGTACTTCGATGCCCCAACCTGTAAGGGGGGAAACCCTGAGCGTCTGTTCCTGATCGGAGACTACTCCTCCTCAGCTGGGTTCTTTGTCACCGTCGGTgtcttctccttcctctactcCATGGCAGCCCTTTCTGTGTATGTTTTCATTCTGGAGAAATACCGTGAAGGCTGCAAGGGAGCCCAGATTGACTTTGTTGTGACCTGTGTGTTCACCTTCTTCTGGCTGGTGGCTTCTTCTGCCTGGGCTAAGGGTCTGTCGGATGTGAAGGCATCCACCGACCCAGACAAGGTTCTCTTGCTGATCGAGGCCTGCGACGAACCGGAGAACCGCTGCCGTGAAGTCCATGACCCTGTCGTCTCTGGTCTCAATACATCTGTGGCATTTGGCTTCCTGAACCTGATCCTGTGGGGAGGGAACCTGTGGTTCGTGTTCAAggagactggctggctggcagctTTTGGCGGCACATACGCACCTTCCCAGGAGAAAGCGCCTGCCCCAGAGTCCTTCGGCCAGGACGGCTATGGGCAGGAGGGCTATGCACAGCAGGGGGATGCCTATACCGGCACCCAGGGAGGCTACCAGCCCGACTATGGCCAGGGCGGCTACACTGAGGGAGGTGGAGACTATCAGCAGGGGGGATACGAACAGCAGCCCACCCCCTACGCCAATCAGATGTGAGCTGGTGCACCCTATGGCAGCTGGAAGCTGgggCCACCATGTGATTTAGGAGTGTGGTGCCTGACCACCACCCACAATTCCACActcctctgtttgtctgtttgtgcaTTTGTGAGTTGacaagaggaggaagggaggcaggcagcgagggatggaggaaggtggACTCTTGGAAGGGGAAGTTATCAACACCGTGTCCCTTGGGAGAGGGTTATTTTGTTGAGGGGGAAATGGGTCCTTACTGTAACATGCTGTTTATTCTCGTGATGTATTTAACTGTGGAAGACAACAGGGGATTCATTGACAGTTTGATCGCACAAGGACAAACTGGAATACAAAACCAAAACATGAACATCAATCTTTTAAAGGAATAACACTTAAATGAAGGACAATAATGGTAGTAATATTTAACGTGGGAGAATGTATTTGTCTGTGCTATGTAAATATCAACATATTCATATAGAAATATATGTACACAGTTGAATAATTGTGCACTCCATATTAGTTGTTATACAACAAATGTAGAGAACAGAGTTATTCAGTTGTATTTACTTCAGTTCTGTTTAGGAGCTCACATAGTTCAACCCTCGTTGTTTTTTAATATttatgttttgtgtttattttatttctccATGTGTGTTTCTTTACATTTTCAGTTTATTCCGTTTCAGAATAGTTATTTTCTCATTGTGCTTTTTTATTTGTTCAACATTACTGAATGAGTTTAACGGGATAGAGTAGAGAAGATGTGATGGCAAAGGATGAAGACAAAAAAAGAAAGCAAAAAGAATGACgaattcagagagagagtagagaagaatgagagaggtGTTAGCAGTGATTTATGCATTCATTACAACTTGTATTCATTGTCTTTTATATTTTTCCATTTAAATATTACTCAAGGATTTAGCTATGTTTGTTGAGAAAAGCTGAAATGCAAAAAGGAGAAAATGCATCTAGGATAATGAAAAAGTAGTTAGCATGGTAAGAATTGGTATTCTGCTAATACTATGCTGTTCCTAAAAACTGCTGTACATACTATGCTATCAATACTTTTAGTTAAAGATGATTTGAGGTTGTGAAGTCAACTGATGTTAAGGGGATCTTTATTTTTAATGTAGTTTAAAACTTGGCGTCAGATAGATTGGGCCCAGAACCTTGTCATGTTTCGATCAACTATTTATCTAGTCTAGAGATGAGTCATAAGACAGAATAAGTAATCATGTTTATTCACAATTTATTTTGGTCATCTGATCAAAACGCATCCATATATTTTCAGAGAACTAAATCAGTATGGCACAATGTGTCATTTTCAAGACCATATACAAGCCATAgaaaataattatttttttacatattaATATAGCCAACTGAGTTGTCCTGAACTGTATCTTGTTTCCATATACATAAAATATCCTGCATCCCCGATCCCCCCAACACCCACACATTCACTCTCAAAAGCAGGTTTTGCATGTGTCTGACTCCTGGAGTTAAAGTACCCTGGAACCAAATTGAGAGGGGGGAGGGCAAGTGGCAAGCAAGTGTTACAGTAATAGTATGTTTGGCTCATCATAAGGTCCCAGCACAGTGCAGCTCTGCTATATTTTACACAAAGTACAGGGACTGCACATGTTGCAATGGTCACTCTTTTCAAGGTCATGTAGATAGGCTGACCTGCCATACTGCCAATCCTCTCTTTGGATAGAAGAAAAACTGTATTGCCAAATGGAAACAGGGCAGGGGTGTCTTGATCGATAGATTTTGCTTCCACAGTTATCACAATAAATTGTTTTTCATCCATGTTATTCCATTATGCAGTTTTGGATCCATACGTTTATTTTTTTACCAGTCGGTGTAGAGGcacctcactttctctcccttctcctgtgttctctctctctttccatatctttctatctctctcttgtaGCTCTTATAAATATGCTCAATGCAATATGTATAGTCTGTCGTTAGTGGTGAATGATGTCTTGTGATACTCTCTACGCCTTTGGACAGTTGTGTTTATTGTTTATGATGTATTCTTATTACTATTTATGATAATGACTATTACAATTCAGAGAAAAAATATCCAAGATTCTCCAGAATTCTATTGTATTCTTATTTTATGGAATCCCTGTGAAACAAAATCAAATAAACTTGACATTCTGTTGAAGGTTAAA
>XM_036988512.1
TATCCACGTTGGATGGTGTGGGAGAGTTAACTAGCCTGGTGCCAGATCTGTATGTTCTTCAACTCATCTGACTATGATAACGACCAAACACGGCAAAGAGTATTTAGCTAAAGCACAAACAGATATGATTCTTCCATGTCAGAGATGATTCCATGTTCTGTTTTGTTGTCCTCCTCCTTCCATCTTTCATGCATGCTTATATCCAATCTGTTGAGCTTTTCATTATCACCCTCCCCCCTCACATTCCTCCCCAATCATTATTAAAACCTGTTAATAAGGAGATGGGGTGGAGGTGGGCTGTGTTGGCACGCTAAAGAGTAATGAGACAAGGGAATAAGTtacgtgtttgtgtatgtgtgtttccgtgtgtgtgtgtgtcagtgtgagtgtacCGTTGCACAAGCGtgagcgtgcatgtgtgtgtgtgtgcatgtgtccgtgtgtggtgtgagggtgtgtgtacAATAGCCCTGTGCAGCGTCCTTTAGTGACAGATGGTGGAGGACCTCAGTCAGATTAATAGGCAGATTTTCCATCCAATGGGATCTGGCCTGCAGGGAAGGGAGGGTGTGGTAAAAATAGGCTGACTGTATAACTTCCTATGtcagtgtgtgcgagtgtgtgtatcTGCATGCTTGTGTGTACAACAGTATGTTAGCGTTCAGGTACACAAGCGCTGGTTTACATTACTGTACACCCCCCTGTAGAATTGTAGTACTGTAGCCTGGGCCGTAGAGAATAACTTATTTAGTAAAACAGATATATCAACCAAACATGTTATTTTACATTTCTTGTATTTTCTTTATACAAAAGCGCACAACTTTAGGTGTCGGAGTAACCATGGCAACGGGTGTAGCGCTGTAACCTGGCAATATAGCTGCATTGATTTGCAGTTTGTGTTGCTTTGTCAGCAGCCTGCAGTGGTTGGAGGAACATTGGAGTGCAGGAGACACAGCAGATGGTGAAACCAGTGTCAGATCTTTGCCATCTTTGCTTTCTCGACATGCGGCAGCTACTCTGGCATGTTCAAGATGAGTGTGGAGTGTAAAAACCGGTCAGAGAGTGACCTGAGCATTGAGGTGAAGTTTGAGTATCCATTCAGGCTACATCAGGTGTACTTCGATGCCCCAACCTGTAAGGGGGGAAACCCTGAGCGTCTGTTCCTGATCGGAGACTACTCCTCCTCAGCTGGGTTCTTTGTCACCGTCGGTgtcttctccttcctctactcCATGGCAGCCCTTTCTGTGTATGTTTTCATTCTGGAGAAATACCGTGAAGGCTGCAAGGGAGCCCAGATTGACTTTGTTGTGACCTGTGTGTTCACCTTCTTCTGGCTGGTGGCTTCTTCTGCCTGGGCTAAGGGTCTGTCGGATGTGAAGGCATCCACCGACCCAGACAAGGTTCTCTTGCTGATCGAGGCCTGCGACGAACCGGAGAACCGCTGCCGTGAAGTCCATGACCCTGTCGTCTCTGGTCTCAATACATCTGTGGCATTTGGCTTCCTGAACCTGATCCTGTGGGGAGGGAACCTGTGGTTCGTGTTCAAggagactggctggctggcagctTTTGGCGGCACATACGCACCTTCCCAGGAGAAAGCGCCTGCCCCAGAGTCCTTCGGCCAGGACGGCTATGGGCAGGAGGGCTATGCACAGCAGGGGGATGCCTATACCGGCACCCAGGGAGGCTACCAGCCCGACTATGGCCAGGGCGGCTACACTGAGGGAGGTGGAGACTATCAGCAGGGGGGATACGAACAGCAGCCCACCCCCTACGCCAATCAGATGTGAGCTGGTGCACCCTATGGCAGCTGGAAGCTGgggCCACCATGTGATTTAGGAGTGTGGTGCCTGACCACCACCCACAATTCCACActcctctgtttgtctgtttgtgcaTTTGTGAGTTGacaagaggaggaagggaggcaggcagcgagggatggaggaaggtggACTCTTGGAAGGGGAAGTTATCAACACCGTGTCCCTTGGGAGAGGGTTATTTTGTTGAGGGGGAAATGGGTCCTTACTGTAACATGCTGTTTATTCTCGTGATGTATTTAACTGTGGAAGACAACAGGGGATTCATTGACAGTTTGATCGCACAAGGACAAACTGGAATACAAAACCAAAACATGAACATCAATCTTTTAAAGGAATAACACTTAAATGAAGGACAATAATGGTAGTAATATTTAACGTGGGAGAATGTATTTGTCTGTGCTATGTAAATATCAACATATTCATATAGAAATATATGTACACAGTTGAATAATTGTGCACTCCATATTAGTTGTTATACAACAAATGTAGAGAACAGAGTTATTCAGTTGTATTTACTTCAGTTCTGTTTAGGAGCTCACATAGTTCAACCCTCGTTGTTTTTTAATATttatgttttgtgtttattttatttctccATGTGTGTTTCTTTACATTTTCAGTTTATTCCGTTTCAGAATAGTTATTTTCTCATTGTGCTTTTTTATTTGTTCAACATTACTGAATGAGTTTAACGGGATAGAGTAGAGAAGATGTGATGGCAAAGGATGAAGACAAAAAAAGAAAGCAAAAAGAATGACgaattcagagagagagtagagaagaatgagagaggtGTTAGCAGTGATTTATGCATTCATTACAACTTGTATTCATTGTCTTTTATATTTTTCCATTTAAATATTACTCAAGGATTTAGCTATGTTTGTTGAGAAAAGCTGAAATGCAAAAAGGAGAAAATGCATCTAGGATAATGAAAAAGTAGTTAGCATGGTAAGAATTGGTATTCTGCTAATACTATGCTGTTCCTAAAAACTGCTGTACATACTATGCTATCAATACTTTTAGTTAAAGATGATTTGAGGTTGTGAAGTCAACTGATGTTAAGGGGATCTTTATTTTTAATGTAGTTTAAAACTTGGCGTCAGATAGATTGGGCCCAGAACCTTGTCATGTTTCGATCAACTATTTATCTAGTCTAGAGATGAGTCATAAGACAGAATAAGTAATCATGTTTATTCACAATTTATTTTGGTCATCTGATCAAAACGCATCCATATATTTTCAGAGAACTAAATCAGTATGGCACAATGTGTCATTTTCAAGACCATATACAAGCCATAgaaaataattatttttttacatattaATATAGCCAACTGAGTTGTCCTGAACTGTATCTTGTTTCCATATACATAAAATATCCTGCATCCCCGATCCCCCCAACACCCACACATTCACTCTCAAAAGCAGGTTTTGCATGTGTCTGACTCCTGGAGTTAAAGTACCCTGGAACCAAATTGAGAGGGGGGAGGGCAAGTGGCAAGCAAGTGTTACAGTAATAGTATGTTTGGCTCATCATAAGGTCCCAGCACAGTGCAGCTCTGCTATATTTTACACAAAGTACAGGGACTGCACATGTTGCAATGGTCACTCTTTTCAAGGTCATGTAGATAGGCTGACCTGCCATACTGCCAATCCTCTCTTTGGATAGAAGAAAAACTGTATTGCCAAATGGAAACAGGGCAGGGGTGTCTTGATCGATAGATTTTGCTTCCACAGTTATCACAATAAATTGTTTTTCATCCATGTTATTCCATTATGCAGTTTTGGATCCATACGTTTATTTTTTTACCAGTCGGTGTAGAGGcacctcactttctctcccttctcctgtgttctctctctctttccatatctttctatctctctcttgtaGCTCTTATAAATATGCTCAATGCAATATGTATAGTCTGTCGTTAGTGGTGAATGATGTCTTGTGATACTCTCTACGCCTTTGGACAGTTGTGTTTATTGTTTATGATGTATTCTTATTACTATTTATGATAATGACTATTACAATTCAGAGAAAAAATATCCAAGATTCTCCAGAATTCTATTGTATTCTTATTTTATGGAATCCCTGTGAAACAAAATCAAATAAACTTGACATTCTGTTGAAGGTTAAA

Function

NR:

description
synaptophysin-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988511.1 False 3165 mRNA 0.42 7 58728598 58741270
XM_036988512.1 True 3979 mRNA 0.43 6 58734585 58741270

Neighbor

gene id symbol gene type direction distance location
LOC110531219 LOC106572493 coding upstream 7840 58684149 ~ 58720758 (+)
LOC110532491 LOC106572442 coding upstream 54299 58671354 ~ 58674299 (+)
LOC110532492 LOC106572441 coding upstream 57650 58668090 ~ 58671251 (+)
LOC110532490 LOC106572439 coding upstream 62667 58656277 ~ 58665931 (+)
LOC110532488 LOC106572433 coding upstream 232240 58447931 ~ 58496358 (+)
plp2 LOC106572444 coding downstream 4563 58745833 ~ 58755855 (+)
prickle3 LOC106572445 coding downstream 22395 58763665 ~ 58814538 (+)
LOC110532497 LOC106572446 coding downstream 75734 58817004 ~ 58823053 (+)
LOC110531221 NA coding downstream 80862 58822132 ~ 58843304 (+)
fkb1a fkb1a coding downstream 113611 58854845 ~ 58856718 (+)
G824524 NA non-coding upstream 50169 58678195 ~ 58678429 (+)
G824523 NA non-coding upstream 50618 58677693 ~ 58677980 (+)
G824495 NA non-coding upstream 87040 58641286 ~ 58641558 (+)
G824487 NA non-coding upstream 91771 58636573 ~ 58636827 (+)
G824549 NA non-coding downstream 4023 58745293 ~ 58745534 (+)
G824590 NA non-coding downstream 56612 58797882 ~ 58800399 (+)
G824598 NA non-coding downstream 106175 58847445 ~ 58851453 (+)
G824616 NA non-coding downstream 118860 58860130 ~ 58861007 (+)
G824617 NA non-coding downstream 119857 58861127 ~ 58863014 (+)
G823580 LOC106567312 other upstream 192955 58519219 ~ 58535643 (+)
LOC110532478 LOC106572378 other upstream 338028 58385510 ~ 58390570 (+)
G823459 LOC106572386 other upstream 478291 58216176 ~ 58250307 (+)
ppdpfa LOC106572462 other downstream 283930 59025174 ~ 59028152 (+)
LOC118966079 NA other downstream 417311 59158581 ~ 59161748 (+)
LOC110532530 LOC106572481 other downstream 635836 59374974 ~ 59382411 (+)
G824936 NA other downstream 672877 59414147 ~ 59415013 (+)

Expression


Co-expression Network