LOC110531221


Basic Information

Item Value
gene id LOC110531221
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58822132 ~ 58843304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110531221
ATGAGTTCAGAGCTGACAGACAAGTCCCGTCTGTCCCTTGCTCTTTTGCAGATCGAGGCCTTCTATGTTTCTCTGATCCTGTTTGTGAGTCGGACCTGGGATGCTGTGACAGACCCACTGGTGGGGTACTTGGTGAGCCGCAGTGGCTTGACACCCATTGGTAAACTCATGCCATGggTGGTTCTCGCTATGCCTTTTGGGGTCCTCTCCTATGTCTTGCTGTGGTTTATGCCCCAAGGCTCCATGTCTCAAGCCTTCAGTGTTCCCTGGTACCTCACAGCAAGCTGCCTGTTTGAGACCCTCATGACTTGTTTTAATGTGCCTTTCGCTGAGCATGTTTTTGGGtggagaccagagagacagagactctacCACAGCCTACAGGATGAGTGTGGAAATGCTGGCGATGCTGGTGGCCTCAGCAATTCAGGGTCAGGTTGTGGCTGTATACAACACAGAGAGGGCTGCAGCCTGTCAACAGCTTGACACCCCTGCGCCACAGACAGTTACACAACAGGCCACGCGTAAGGCTTTCCTGACCTCAGCACTGGTCATAGGCGGGCTGTTCTTCCTCTGCTGCCTGGTCCTCTTCCTGAGGGTGAAGGAGCAGCAGGCTCCCCTCTATAGTCTGGCTAGAGTGCGTCTGTCCTATCTCACCACTCTAAAGATGTTAGTGTGCCACATTCCTTACCAACGACTGGTCCTTGGCCTCCTCTTTGCTGCACTTGCCTTTCAGATGTCTTTGGGGAATTTTGCACTGTTCTGTACCCATGTAGCTGGGCTTGCGGCCCAGTTCCAACACCTTCTCCTGGCTCTGCTGATAGCAGCCACTATAGCTGTTCCAATGTGGCAGGCAATCCTGGTACGAGTTGGGAAAAAGACCACAATCTTCATCGGCCTATCTCTCTTCATCCCAGCTGTAACAATCATAGCTTGTGTACCCAATAACCTGCCTGTCTTTGTGACCATGTGTGTGATGTTAGGATTCAGCTTGGCAACCATGTTCCTGCTGCCTTGGTCCATGCTCCCGGATGTGGTAGATTACTTTGCCTTGAGTAACCCCTGCTGCAAGGACCTGGAGCCTGCTTTTCTCCTGCTATGCCTTCTGCAGTAAGCTGGGGGAGGTCTGTCTGTTAGAATCTCAACCATGACATTACATTTTGTGGGGTATTGTGCAGGTGCTTGTAGCCATAGTGAGGACGTGGTGACTGCTCTTATTGTGCTGTTTGCCCCTGTGCCCATCATCCTACTGCTGGTAGGGCTGGTCTTCTTCCACCTGTACCCCATCAACAAGGATCGACTCCTCCAGCTCCAGAGAGAGCTAGGAAGAGATGTTGAAGCCATAGATTCAACTGATATAGAAGAGAAGATAGGATCACACATTCATCAGTCAAGACACCAAACACATGAGTCCAGTCTGAAGTCATGTGGTGAGTCACAGCCAACTAAGTCAAGTTGTATTTAAACAAGTCTAAAAAGTTAAATAACCAATCACAATATCCACTGGAGTTCAGGCCTGATTTGAATTCCCATTCACAAGTATCTAAGCCCAAATCAGATCACCTTGTATGGAATTCTTTCCAAATTCTAATCACTGCTCACGTAAATCTGATCATAGGATGTCTAACTAGTCTGAAGGAAAATGTAAAATTACATTTGTCTAAAAAAATCATATATAAACAATTGTGCCAATGTCACGGGCGGGGATCTTCTACACCAGCAGTCCCCAATTACATTCAGCCATGAGACGATTTTTACTTGTGCGGATGGTCGGGGGGTCGGAACATATTTataaataatttgtacactgcataTTGACCATAAGAATCCTAAACAGATATAGTATTAGACAAAAATTAAATCATTTCAAACTTTGATTACATTGGGATATAATCACATATGCCTATAtttgtgtgggaatacttgggaacagatttcctaaattaaaatcacttttaACTTTAAAATCAGTGCATGATGACGCAATACACAAAAAAtgttttcatgtaccgaataaaaatctaaattttagtatgtttccatcgcatttaactctactgatagttttgtcacaaaaaactgtagggttaaataaaaaatgtgtttacTCTGGACTTGGCACTTGCACTCTAGCCAAAAGATGACAGATACAGTGGGGGGTAGGCTCTGCATCTAGGCTGGTCTATAGgaggagattattatggataagagcgagaatatttGTTTGTCTAACGGCAGTCCagcatcaatcatcatgtcaccagtatgagaccctcaatatttattggaaaggcaCATCAAGATCACAGTGCACTTTCACCACTctttgaagttcatcataacttatttaaactgtagcctaataaactgcatggttggtC

Function

NR:

description
sodium-dependent lysophosphatidylcholine symporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110531221 True 2381 mRNA 0.45 13 58822132 58843304

Neighbor

gene id symbol gene type direction distance location
prickle3 LOC106572445 coding upstream 7594 58763665 ~ 58814538 (+)
plp2 LOC106572444 coding upstream 66277 58745833 ~ 58755855 (+)
LOC110532493 LOC106572443 coding upstream 80862 58728598 ~ 58741270 (+)
LOC110531219 LOC106572493 coding upstream 101374 58684149 ~ 58720758 (+)
LOC110532491 LOC106572442 coding upstream 147833 58671354 ~ 58674299 (+)
fkb1a fkb1a coding downstream 11577 58854845 ~ 58856718 (+)
LOC110532502 LOC106572453 coding downstream 84715 58928019 ~ 58937708 (+)
uckl1a LOC106572454 coding downstream 94485 58937789 ~ 58947479 (+)
LOC110532505 LOC106572456 coding downstream 122322 58965626 ~ 58973628 (+)
LOC110532506 LOC106572457 coding downstream 132165 58975469 ~ 58982674 (+)
G824590 NA non-coding upstream 21733 58797882 ~ 58800399 (+)
G824549 NA non-coding upstream 76598 58745293 ~ 58745534 (+)
G824524 NA non-coding upstream 143703 58678195 ~ 58678429 (+)
G824523 NA non-coding upstream 144152 58677693 ~ 58677980 (+)
LOC110532492 LOC106572441 non-coding upstream 150881 58668090 ~ 58671251 (+)
G824598 NA non-coding downstream 4141 58847445 ~ 58851453 (+)
G824616 NA non-coding downstream 16826 58860130 ~ 58861007 (+)
G824617 NA non-coding downstream 17823 58861127 ~ 58863014 (+)
G824618 NA non-coding downstream 19838 58863142 ~ 58863399 (+)
G824619 NA non-coding downstream 20616 58863920 ~ 58864507 (+)
G823580 LOC106567312 other upstream 286489 58519219 ~ 58535643 (+)
LOC110532478 LOC106572378 other upstream 431562 58385510 ~ 58390570 (+)
G823459 LOC106572386 other upstream 571825 58216176 ~ 58250307 (+)
ppdpfa LOC106572462 other downstream 181896 59025174 ~ 59028152 (+)
LOC118966079 NA other downstream 315277 59158581 ~ 59161748 (+)
LOC110532530 LOC106572481 other downstream 533802 59374974 ~ 59382411 (+)
G824936 NA other downstream 570843 59414147 ~ 59415013 (+)

Expression


Co-expression Network