XLOC_026745


Basic Information

Item Value
gene id XLOC_026745
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48999903 ~ 49001293 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052499
ttatttaatgtgattttcaaCAAAGGTCAACAAAAAAATCCATTTATAGTCCCACCAAGTTTCCACTTTTGAGCCCCATGGATAGGAAGCAAGACACGTCGATCAAATTGTGTCCTTAATACagagtttaaaaaaatttgtCCGCCAAAACCGGCTGAGGTCTCTGAGATAACAGTGACAGAAGATCGCCTCAGAGAGGAACTGTACAGGCAAAAGGTATGTATTAGATTTTCTCTTTTTAGGAGtcattattttaatcaaatacatGCCTCCtcatatatgtaatttgttttactttatacTGTAGATTCATGTGGTTAGGAAATTATGTAAGGAGTGTGGGTTAGATTCGTCAGGATCATGAGCTGACCTCCTTCTGAGGTTGTCCTGTGAAATGAAGTCAAGGCAGACATACGACAAGATTTTTCAAAAGATCTGGGTGGCTTCAGGTAGGGTAATTTGCTTTATGTGTGTGTTACTTTGTGAAAGTTTTGCCACGTGGGTCGAAAAGCTTCCACAGCTGgtagtttttaattgtttgaacttattttttttttaatagttttgtttaatATACCTTTGTGAGGATAAACATTGGTTAACTTTTTCCCCTCTCAGGTGGTTGGGCTGTGATTTTGTGCCTGTGCGGCAATGTGTACAGCATCAAATGTAACATTCGTGCAGAAAGCCCACATGACTTTGCAGACATGTTGCTTTCCTAGAAACACATGCCAAATGTCGTCATACATGACTTTGCACATGGGTTAGCAACCCACATGAACCTTAGAGAACCAGAAAGTTTGCCTTTCAAGCCATTTGAAGGACGGTTAAGAGCACCAACTCCAGACAACATAGCCAAAGCCAAAGATGGGAAACTGAAGGTCTCATTGCCTTggctaaattgtaaaaaaaacatcccagACACTGAAGGTCATCCAATAACCGGTTCAGCAGAACATTATGCTCTGTATGACCGGTTCCATGAGGACAATACAAAAGATCCTTGTGATGTCCTGCGGAAACTTGACCTGGTCCCACAACTCGCGGGACAAGTGAACAGTCAAGTTGCAGAACAGCTATTTTCCAGAATGAAGAAAAACAATTACTTTTTAAACATGACATTACCATCGACTCATCTGTTTCTTATGAGAAATATCATACATCATCATAACATGCACAGAAATGAACAACGACTAGGCAACATAAAAAGGGCTTTTGAAAATGATGTCACAATGAACAGGCACAGCCAGGCAGTGTTggCAAATCCACTGTCATCTGAGAGAGTATCCACTGTTCCA
>TCONS_00052498
ttatttaatgtgattttcaaCAAAGGTCAACAAAAAAATCCATTTATAGTCCCACCAAGTTTCCACTTTTGAGCCCCATGGATAGGAAGCAAGACACGTCGATCAAATTGTGTCCTTAATACagagtttaaaaaaatttgtCCGCCAAAACCGGCTGAGGTCTCTGAGATAACAGTGACAGAAGATCGCCTCAGAGAGGAACTGTACAGGCAAAAGATTCATGTGGTTAGGAAATTATGTAAGGAGTGTGGGTTAGATTCGTCAGGATCATGAGCTGACCTCCTTCTGAGGTTGTCCTGTGAAATGAAGTCAAGGCAGACATACGACAAGATTTTTCAAAAGATCTGGGTGGCTTCAGGTAGGGTAATTTGCTTTATGTGTGTGTTACTTTGTGAAAGTTTTGCCACGTGGGTCGAAAAGCTTCCACAGCTGgtagtttttaattgtttgaacttattttttttttaatagttttgtttaatATACCTTTGTGAGGATAAACATTGGTTAACTTTTTCCCCTCTCAGGTGGTTGGGCTGTGATTTTGTGCCTGTGCGGCAATGTGTACAGCATCAAATGTAACATTCGTGCAGAAAGCCCACATGACTTTGCAGACATGTTGCTTTCCTAGAAACACATGCCAAATGTCGTCATACATGACTTTGCACATGGGTTAGCAACCCACATGAACCTTAGAGAACCAGAAAGTTTGCCTTTCAAGCCATTTGAAGGACGGTTAAGAGCACCAACTCCAGACAACATAGCCAAAGCCAAAGATGGGAAACTGAAGGTCTCATTGCCTTggctaaattgtaaaaaaaacatcccagACACTGAAGGTCATCCAATAACCGGTTCAGCAGAACATTATGCTCTGTATGACCGGTTCCATGAGGACAATACAAAAGATCCTTGTGATGTCCTGCGGAAACTTGACCTGGTCCCACAACTCGCGGGACAAGTGAACAGTCAAGTTGCAGAACAGCTATTTTCCAGAATGAAGAAAAACAATTACTTTTTAAACATGACATTACCATCGACTCATCTGTTTCTTATGAGAAATATCATACATCATCATAACATGCACAGAAATGAACAACGACTAGGCAACATAAAAAGGGCTTTTGAAAATGATGTCACAATGAACAGGCACAGCCAGGCAGTGTTggCAAATCCACTGTCATCTGAGAGAGTATCCACTGTTCCA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021546 rhombomere development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0001757 somite specification biological_process
GO:0034470 ncRNA processing biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0006396 RNA processing biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052499 False 1298 lncRNA 0.40 2 48999903 49001293
TCONS_00052498 True 1207 lncRNA 0.41 3 48999903 49001293

Neighbor

gene id symbol gene type direction distance location
XLOC_026744 BX769173.1 coding downstream 6323 48986671 ~ 48993580 (-)
XLOC_026743 BX769173.3 coding downstream 19584 48965923 ~ 48980319 (-)
XLOC_026742 ARHGAP44 coding downstream 283481 48638594 ~ 48716422 (-)
XLOC_026741 ndel1b coding downstream 387825 48584684 ~ 48612078 (-)
XLOC_026740 atp5pd coding downstream 439997 48549294 ~ 48559906 (-)
XLOC_026746 BX769173.2 coding upstream 9694 49010987 ~ 49015203 (-)
XLOC_026747 NA coding upstream 22607 49023900 ~ 49036782 (-)
XLOC_026748 BX784040.1 coding upstream 76469 49077762 ~ 49077879 (-)
XLOC_026749 trim35-12 coding upstream 101917 49103210 ~ 49110710 (-)
XLOC_026750 gipc1 coding upstream 124810 49126103 ~ 49138004 (-)
XLOC_026739 NA non-coding downstream 526149 48461497 ~ 48473754 (-)
XLOC_026738 NA non-coding downstream 671770 48323540 ~ 48328133 (-)
XLOC_026736 NA non-coding downstream 1166789 47827202 ~ 47833114 (-)
XLOC_026732 NA non-coding downstream 1802943 47194738 ~ 47196960 (-)
XLOC_026731 NA non-coding downstream 1868792 47130032 ~ 47131111 (-)
XLOC_026752 NA non-coding upstream 185105 49186398 ~ 49372676 (-)
XLOC_026754 NA non-coding upstream 404865 49406158 ~ 49418345 (-)
XLOC_026761 NA non-coding upstream 933343 49934636 ~ 49937735 (-)

Expression


Co-expression Network