LOC110532516 (mare3)


Basic Information

Item Value
gene id LOC110532516
gene name mare3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59132059 ~ 59136843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616488.2
GAGTTCGTGGGGAAGATCTCATTTGTATCCTCCTCGCGTCCTCTCTCGGCTCTCAAACTCATTGGAGGAGAAAGCCAGAGGCACCGCCCccctgaccttctcctccaatgggttttaagAAGGAGACGAGGATGCGAGGTGTTCAatttgagatattccaatgttcAGGTCGTtcaggctagctagctacatcacAACTGTGCAAGAGCCAAGACACTAACGAAATAAGCCGCCGGGGAACGGCGAGAAAGTATCTACAAGTTTTAACCTTTTTGTATTTTTGAGCAATTTGATTTATCTGTTGGAAAATTAAGACAATTTAACGTTAGAAGATGGCTGTGAACGTTTACTCTACATCTGTGACCGGCGACAACCTTAGTCGCCATGATATGCTTTCTTGGATCAACGAGTCTGTACAGATGAACTACTCCAAGATTGAGCAGTTGTGCTCAGGTGCTGCTTACTGTCAGTTCATGGACATGCTTTTCCCTGGATGCATACCATTGAAGAAGGTTAAATTCCAGGCCAAACTAGAGACTGAGTTCCTCCACAACTTCAAACTTCTACAGACCAGTTTTAAGAAGATTGGGGTTGACAAGATCATTCCTGTTGATAAATTGATAAAAGGCAAGTTCCAGGACAACTTTGAGTTTGTGCAGTGGTTCAAGAAATTATTTGATGCCAACTACGATGGGAAGGAGTATGACCCGGTCAGTGCTCGCCAAGGCCAGGACACTGCTCCTACTCCAAACCCAGGGCAGGTCGCACCCAAGCCCAGGAAGCCCAGCACTGTACAGCCCCACAGCTCCCCACCTGTTATCAAACCAGCTGCGAGAGTCGCTCCCATGAGGTCTACAACAACAGTGACCAAACCCCCGCCCAAGTCAGCAGGGAGTGCCTTGCGTAGGCCCGGAGCAGCAGGGGATGTGGAGAGGGAGGAGCTATCCCAAGAGGTCAGTTCCCTGAAAGCCACTGTCCAggacatggagaaagagagagacttttATTTTGGAAAGCTGAGGTCCATTGAGGTCATCTGCCAAGAAGTGGATGGAGAGGCAGATACAACTATGCAGAAGATTATGGATGTTCTATATGCCACTGATGAGGGGTTTGTTATTCCTGATTCTGATGCTGAAGGAGAAGAACCAGAAGAGTTCTGATGAAAAATGGACACAACTCTAGTCCATGCcataatctcacacacacacacacacacacacacacacacaggttagtgaACACACGTTTGCATGTGCAATGTACATGCATACGCACTCGTGTGCTCTAATGAAATGAACATGCACTTACTCACACATACTGCCACTGTGGATTAAGTTGCCTTTGGATCATACACTGGCTGCCCCCTTGGTCCAAGTCTTTGTTGGTCCAAGTGTTTTTTGGACCATAATACTTTTCAGAGAGCCTGCTGATCCAGCTGCCAGAGAAGAAGAACCCTGGATGAAATTCTAATAGGGCCATTCCTTTCTGGTTTCTTTTCTGCCTTGTTCTTATTCTGGCCTCTGCTGTGCCTTTCAACTTTGGCCTGTTACTTTTGAAATATGTTCAGGTCTTTCTATTCCTTATTTCCAATTGACCTAAACAAAACTGTACTAGGTGATTTTGATATATTTGCAAATATGATTAATTATTAAAGATATATGAATATGTTTACTCTGCCAATGGAAATTACTGTAATTTTTATGGTATGTTTACGCATATTCATTATACTTGAGTTCAAATTTGTGGTTTAGGCGATCAGCATTTGTATTTAGTTTCCTGTTTATCTGGGGAGTTATTCATCACATTACTTTTTTTGAAGTAAAAAAAGTCATGTTTTATTGATAACCTTTAAAtaaaatactgtactttttactTAAATGCTAAATTATAGACTCATTCTGACATTTGTGTGTTGTATGTAGGCTAGTTTTAGACTAGAGACTAGCATCTCTACCGACCTATGTTCTAATTTACTTCCTCATGTAAGGCAAAGACCGGATGTATGGTTGCCTGTCCACACTGAAGAAATACTTCCTTCTAGTCTACAATAAGAGCAGAACTATATGCTCTTAGCAGAAGAACTGAGAGCTGTCTTTTAGACCTCGGAAGTCTGTTTTAAACTTGGGAGCAATATAAGGTTTCCATAAGCATCTCTTGTCTTTAGAAATAAAGTATTGATTGGAGAAATTAAATGTTTTTAGGTTGAAGAAATAACTTGTTTTGACAAGTTTTATGTTATTAAAAActcaaatgtata
>XM_021616490.2
GAGTTCGTGGGGAAGATCTCATTTGTATCCTCCTCGCGTCCTCTCTCGGCTCTCAAACTCATTGGAGGAGAAAGCCAGAGGCACCGCCCccctgaccttctcctccaatgggttttaagAAGGAGACGAGGATGCGAGGTGTTCAatttgagatattccaatgttcAGGTCGTtcaggctagctagctacatcacAACTGTGCAAGAGCCAAGACACTAACGAAATAAGCCGCCGGGGAACGGCGAGAAAGTATCTACAAGTTTTAACCTTTTTGTATTTTTGAGCAATTTGATTTATCTGTTGGAAAATTAAGACAATTTAACGTTAGAAGATGGCTGTGAACGTTTACTCTACATCTGTGACCGGCGACAACCTTAGTCGCCATGATATGCTTTCTTGGATCAACGAGTCTGTACAGATGAACTACTCCAAGATTGAGCAGTTGTGCTCAGGTGCTGCTTACTGTCAGTTCATGGACATGCTTTTCCCTGGATGCATACCATTGAAGAAGGTTAAATTCCAGGCCAAACTAGAGACTGAGTTCCTCCACAACTTCAAACTTCTACAGACCAGTTTTAAGAAGATTGGGGTTGACAAGATCATTCCTGTTGATAAATTGATAAAAGGCAAGTTCCAGGACAACTTTGAGTTTGTGCAGTGGTTCAAGAAATTATTTGATGCCAACTACGATGGGAAGGAGTATGACCCGGTCAGTGCTCGCCAAGGCCAGGACACTGCTCCTACTCCAAACCCAGGGCAGGTCGCACCCAAGCCCAGGAAGCCCAGCACTGCTCCCATGAGGTCTACAACAACAGTGACCAAACCCCCGCCCAAGTCAGCAGGGAGTGCCTTGCGTAGGCCCGGAGCAGCAGGGGATGTGGAGAGGGAGGAGCTATCCCAAGAGGTCAGTTCCCTGAAAGCCACTGTCCAggacatggagaaagagagagacttttATTTTGGAAAGCTGAGGTCCATTGAGGTCATCTGCCAAGAAGTGGATGGAGAGGCAGATACAACTATGCAGAAGATTATGGATGTTCTATATGCCACTGATGAGGGGTTTGTTATTCCTGATTCTGATGCTGAAGGAGAAGAACCAGAAGAGTTCTGATGAAAAATGGACACAACTCTAGTCCATGCcataatctcacacacacacacacacacacacacacacacaggttagtgaACACACGTTTGCATGTGCAATGTACATGCATACGCACTCGTGTGCTCTAATGAAATGAACATGCACTTACTCACACATACTGCCACTGTGGATTAAGTTGCCTTTGGATCATACACTGGCTGCCCCCTTGGTCCAAGTCTTTGTTGGTCCAAGTGTTTTTTGGACCATAATACTTTTCAGAGAGCCTGCTGATCCAGCTGCCAGAGAAGAAGAACCCTGGATGAAATTCTAATAGGGCCATTCCTTTCTGGTTTCTTTTCTGCCTTGTTCTTATTCTGGCCTCTGCTGTGCCTTTCAACTTTGGCCTGTTACTTTTGAAATATGTTCAGGTCTTTCTATTCCTTATTTCCAATTGACCTAAACAAAACTGTACTAGGTGATTTTGATATATTTGCAAATATGATTAATTATTAAAGATATATGAATATGTTTACTCTGCCAATGGAAATTACTGTAATTTTTATGGTATGTTTACGCATATTCATTATACTTGAGTTCAAATTTGTGGTTTAGGCGATCAGCATTTGTATTTAGTTTCCTGTTTATCTGGGGAGTTATTCATCACATTACTTTTTTTGAAGTAAAAAAAGTCATGTTTTATTGATAACCTTTAAAtaaaatactgtactttttactTAAATGCTAAATTATAGACTCATTCTGACATTTGTGTGTTGTATGTAGGCTAGTTTTAGACTAGAGACTAGCATCTCTACCGACCTATGTTCTAATTTACTTCCTCATGTAAGGCAAAGACCGGATGTATGGTTGCCTGTCCACACTGAAGAAATACTTCCTTCTAGTCTACAATAAGAGCAGAACTATATGCTCTTAGCAGAAGAACTGAGAGCTGTCTTTTAGACCTCGGAAGTCTGTTTTAAACTTGGGAGCAATATAAGGTTTCCATAAGCATCTCTTGTCTTTAGAAATAAAGTATTGATTGGAGAAATTAAATGTTTTTAGGTTGAAGAAATAACTTGTTTTGACAAGTTTTATGTTATTAAAAActcaaatgtata

Function

NR:

description
microtubule-associated protein RP/EB family member 1-like isoform X2

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10436 MAPRE; microtubule-associated protein, RP/EB family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616488.2 False 2260 mRNA 0.42 8 59132059 59136843
XM_021616490.2 True 2212 mRNA 0.42 7 59132059 59136843

Neighbor

gene id symbol gene type direction distance location
LOC110532515 LOC106572465 coding upstream 5084 59109495 ~ 59126975 (+)
ppdpfa LOC106572462 coding upstream 103907 59025174 ~ 59028152 (+)
LOC110532511 LOC106572500 coding upstream 107487 59018838 ~ 59024572 (+)
LOC110532510 LOC106572461 coding upstream 113381 59013562 ~ 59018678 (+)
LOC110532506 LOC106572457 coding upstream 149385 58975469 ~ 58982674 (+)
LOC118966079 NA coding downstream 21862 59158581 ~ 59161748 (+)
LOC110532519 NA coding downstream 46204 59183047 ~ 59185601 (+)
LOC110531223 LOC106567210 coding downstream 51642 59188485 ~ 59190896 (+)
LOC110532529 LOC106572479 coding downstream 186732 59323575 ~ 59336156 (+)
LOC110532530 LOC106572481 coding downstream 238131 59374974 ~ 59382411 (+)
G824707 NA non-coding upstream 101591 59030203 ~ 59030468 (+)
G824706 NA non-coding upstream 102074 59029160 ~ 59029985 (+)
G824675 NA non-coding upstream 157706 58973902 ~ 58974353 (+)
G824640 NA non-coding upstream 229501 58894243 ~ 58902558 (+)
G824619 NA non-coding upstream 267552 58863920 ~ 58864507 (+)
G824755 NA non-coding downstream 1805 59138648 ~ 59139540 (+)
G824753 NA non-coding downstream 7435 59144278 ~ 59145748 (+)
G824760 NA non-coding downstream 14035 59150878 ~ 59151503 (+)
G824761 NA non-coding downstream 17443 59154286 ~ 59154579 (+)
G824763 NA non-coding downstream 20111 59156954 ~ 59157374 (+)
fkb1a fkb1a other upstream 275360 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 447549 58684149 ~ 58720758 (+)
LOC110532492 LOC106572441 other upstream 460808 58668090 ~ 58671251 (+)
G823580 LOC106567312 other upstream 596416 58519219 ~ 58535643 (+)
G824936 NA other downstream 277304 59414147 ~ 59415013 (+)
G825484 NA other downstream 461186 59598029 ~ 59598970 (+)
G825749 NA other downstream 873166 60010009 ~ 60010425 (+)

Expression


Co-expression Network