LOC118966079


Basic Information

Item Value
gene id LOC118966079
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59158581 ~ 59161748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053305.1
GGTCAGCCCCATGATAGAGCCTATACTGTTAGACTGTCATGGGGCTGAGGTGCATGCTACTTTTTCCCATTTGTTTTCACAGGTGCAGCTGCAGATGTTTGTCTGTCAAGCTGATTTTATCACCTGGACTCCCCAGCAAAGTTTCATTTTCCGTGTCCCATGATATGAGGATTTTATCATTAAGGCAGTGGACACCATCAGCAGATTCTGTGCAAGGCACATTTACCCGTGGCTTGTTGGAACTTCAGCACAAGAGATGGACAAGGAGGTTCAGattACAGCCGGTAGCAACAAGAAGAAGCGCTACAATGTGCGTGGACCCAAGAAagacaggaagacacagtacacatgcatcaagtgcaagaaatacatttgcaacacacacGCAGCAAAACTCTGTTCCTCGTGTGGTGTAGACCAGCCTTAATTTGTTTTCAATGGGTCTCATTTATAatttccataaaatactgtatgtaaaatttgtccaatttgttcagttcaaagcaataaacatcaTAGTGATAAAAACCTTGTTTCATTTATATGTGTTCAAGATAAACATGATTATTCCACCCATGTCTTGATTATAAATTATTTTtaacaaaaaaatctaattttataaAACGAATAGCGCTTTTATTGACAAATGTGATCTAGCAGAGGTAAATGgcaaatattaaccatgtatgctgtctatacTGCCTGTAATTGATATAAGTCAACATCTAAGTATTCATTAAGTATTTTTATGTCAATTGAAAtggctgtatttttttttaaacaataatgttgtgggtccatcagacccgcaaccattgggtgaataacaaaaacatgaacaccacacaagggttaagtatattttaacaatTACATTTCCTTCCgatactaaagtatatttaaaaccaaatacttttactcaagtagtattttactgggtgactcacttttactacACACATCACATTAAAGTACTGACTGCAACTCACATTTTCTTGTGTGGTTACTTTGCCTAACGATTGAATGTTGCCTTAACTCTCCTTCCCTCAGACCAGCAGCATTTCAGGACAGGCATACAAACAGAAAGTGAGACGTCACCTTCCGTTCCTTGCCTCTGACCTCCAACCTTCAGCAGTCAAGAGCAGtTGACAGTTTACAAGGCCATGTCCTACAGCATTCTGCTCCCCATCACCCAGCCCCCCCATCCCAGAGCTTCTGAAGGACCATCAGCACAGGTCACAAGGGCAGACACTACCACCAAGCAGAAGATGAACAATAAGCGCTGGCCCCACTCACACTACATGGCTGCTCCTTCACAACCAGCAACTACAAGGTGCTAATATCACCCTCGCTGAATACACTATCCTCAGAAATAAAAGGAGTCAAACTGGAACT
>TU937803
TTTCAATACTTTATTTTCCTCCTTCTACACTCAGGTATGGTCACTGTGCAATTTTAATCAGGTAAAACACATTGTGGTTCATTAAAAGACTATTCTGTATAAATAGAAAAAGTATAACTAAGGTAAAACGTGATCAGGTTTTAATTGAAAATCATTGTTTTGTCTGAATCACATGACAAATAACATAATAAATGATGTCACAATTCATGTTTTGCATTCTCAGGAGATAGAAGCAGAGTCTACAAAAATCTATTCAAATGTTATTATCACATGTGCCTAATACAACAGGttcaccttaccgtgaaatgcttacttacaagcccttaacaatgcagttcaagaaatagagttaagaaaatatttacgaaataaactaaagtaataaatcaaataaaaagtaacacaataaaataacaataacgaggttatatacagttgaagtcagaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaaaattccctgtcttaggtcagttaggatcaccacttaattttaagaatatgaaatgtcagaataatagtagagaggatttatttaagctttttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgccttcaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataatttgggtgaattttggcccattcctcctgacagagctgctgtaactgagtcaggtttgtaggccttcttgctcgcatacgctttttcatttccgcccacaaatgttctataggattgaggtcagggcttggtgatggccactccaatactttaactttgttgtccttaagccattttgccaaaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagcttgaacttcctgacggatgtcttgagatgttgcttcaatatatccacgtaattttcctacctcatgatgtcatctattttgtgaagtgcaccaatccctcctgctgcaaagcatccccacaacatgatactgccacccccgtggttcacagttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtaccatctttgtccccatgtgcagttgaaaac
>TU937804
gggtgaataacaaaaacatgaacaccacacaagggttaagtatattttaacaatTACATTTCCTTCCgatactaaagtatatttaaaaccaaatacttttactcaagtagtattttactgggtgactcacttttactacACACATCACATTAAAGTACTGACTGCAACTCACATTTTCTTGTGTGGTTACTTTGCCTAACGATTGAATGTTGCCTTAACTCTCCTTCCCTCAGACCAGCAGCATTTCAGGACAGGCATACAAACAGAAAGTGAGACGTCACCTTCCGTTCCTTGCCTCTGACCTCCAACCTTCAGCAGTCAAGAGCAGtTGACAGTTTACAAGGCCATGTCCTACAGCATTCTGCTCCCCATCACCCAGCCCCCCCATCCCAGAGCTTCTGAAGGACCATCAGCACAGGTCACAAGGGCAGACACTACCACCAAGCAGAAGATGAACAATAAGCGCTGGCCCCACTCACACTACATGGCTGCTCCTTC

Function

NR:

description
WD repeat-containing protein on Y chromosome-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053305.1 False 1395 mRNA 0.40 3 59158705 59161748
TU937803 False 1279 TUCP 0.37 2 59158581 59160196
TU937804 True 498 lncRNA 0.45 2 59160996 59161668

Neighbor

gene id symbol gene type direction distance location
LOC110532516 mare3 coding upstream 21862 59132059 ~ 59136843 (+)
LOC110532515 LOC106572465 coding upstream 31730 59109495 ~ 59126975 (+)
ppdpfa LOC106572462 coding upstream 130553 59025174 ~ 59028152 (+)
LOC110532511 LOC106572500 coding upstream 134133 59018838 ~ 59024572 (+)
LOC110532510 LOC106572461 coding upstream 140027 59013562 ~ 59018678 (+)
LOC110532519 NA coding downstream 21299 59183047 ~ 59185601 (+)
LOC110531223 LOC106567210 coding downstream 26737 59188485 ~ 59190896 (+)
LOC110532529 LOC106572479 coding downstream 161827 59323575 ~ 59336156 (+)
LOC110532530 LOC106572481 coding downstream 213226 59374974 ~ 59382411 (+)
LOC110532531 LOC106572482 coding downstream 225116 59386864 ~ 59393869 (+)
G824765 NA non-coding upstream 440 59158048 ~ 59158265 (+)
G824764 NA non-coding upstream 1035 59157408 ~ 59157670 (+)
G824763 NA non-coding upstream 1331 59156954 ~ 59157374 (+)
G824761 NA non-coding upstream 4126 59154286 ~ 59154579 (+)
G824760 NA non-coding upstream 7202 59150878 ~ 59151503 (+)
G824769 NA non-coding downstream 3843 59165591 ~ 59165885 (+)
G824770 NA non-coding downstream 4351 59166099 ~ 59166315 (+)
G824771 NA non-coding downstream 4591 59166339 ~ 59166543 (+)
G824772 NA non-coding downstream 5159 59166907 ~ 59167202 (+)
fkb1a fkb1a other upstream 302006 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 474195 58684149 ~ 58720758 (+)
LOC110532492 LOC106572441 other upstream 487454 58668090 ~ 58671251 (+)
G823580 LOC106567312 other upstream 623062 58519219 ~ 58535643 (+)
G824936 NA other downstream 252399 59414147 ~ 59415013 (+)
G825484 NA other downstream 436281 59598029 ~ 59598970 (+)
G825749 NA other downstream 848261 60010009 ~ 60010425 (+)
G826505 NA other downstream 1284282 60446030 ~ 60446534 (+)
LOC118966079 NA other upstream 800 59158581 ~ 59161748 (+)

Expression


Co-expression Network