LOC110532519


Basic Information

Item Value
gene id LOC110532519
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59183047 ~ 59185601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474844.2
taaataaaaaactactCCACGGCAAAGACACCACTTTTCCTACCCCTCTTGCTTCCGGCTCTAGTCCCGACGAAGCAGGCCAACTCAGATAATCTTCCCACTGCTTCAGACAGCGACCTTACAGCAATTACAATGGTAAACAATTTCAATAAGACACAAACAACATTAAAAATAGGTGTTTGTATTACTCACAAATATGATTTCCCCAATACACAGATCAACACAAGGGGGATTTAGATGGTGATTGTTTGATGGATGAGATCCTGAGCTATATAAGCGGATGGCGTGCACCTGAGGTGCAGAAAGAGCAAATCCTCCATGACTGCAAGGCATGTGAGAGGCTGCTGGTCCACATGGGTTCTGAGCATAACTATGCTAAAGGATCTTCTGATGCAACATCCTTTATCAACAGGAAGTGCTACACTGAGAACACTAGACTGGTGGAGCCATCTCATCTGCTGAGGGTGATGGTAACAAAAATGGAGGACATAATTGACAAAAACTTTGCCCGTTTTTGCCTAGAGACTTCTATTGTGTCAGGACTAAGAGTCCTCTTACTTAGATCTAGTCTAGTGCCTTTGATTGCATCCTGGAAGGCCGTGTCGATGCATGCCTACCCCCTCCATAGGAAAAAATATAAAGAAATACACCATGTGTAGAATGTGAGCACAGCTTAGAAAAATAAATTGTGAAGTTAACGAACCAAAAACCACAGCACAGCGTAAACTGAATCATTTCACTGAATAATACGTTTTTGGGGGTGTTTTATAATATCAGACATCAGTAACTGTATGGCGCCGTGTGCTGTATGGGAAGTGGAcagagtgtatatacagtgtggaGCCTAAAGTGTATGAAGCCAACAAGAAGTCAGAGAAGGGGGATACTAAGAAAAATAAACAGGCGAGCACACAGACCTGTGATTTGTCCAACTGTTTTTAAACAATggcaaaaaaaaatcttaaacagTGTTTCTTCCTTTTACATAAACATGCAGTGGTTTTAGGTGAAGGTAAGGTATAAGTGTATTTGTAAGTACTGTTGGCTTAGTGTGCTACAGCAGTCCTAGTTATTATGGCTATATAGGTTGCTTTAAAGTTTGTGTGAATGCAACTGTCTGTAGATTGTAGTAGGCtaatgtgtatagtattgtatgTAGGAGCAAGTGCTGGAGAAAAGGAGACTGAGGATATGCCTGAGGTTTAAGAGACCGTCTCTGTGATACCAGGAAGTGTCTAACTGTGGAGAATAAATCCATGACCTGCACATTCAgaagaggaaacacacacacacacattagggaTATGATTTATATCTGTGTTTCTAATTAACCCTGACTCTGATCCTTGCTAACGCTCTCTGTGGTATAGATGTATCATTTCACCATGACTCTGAATGAACTGGAGCCTGGTATGGTGAGGCTATTGGCAGCGTAAGAATGCCATCTAAGACCTGACATCAGAGCCATGGAGAATGGAGACCTGGATGCAGCAAGTGTAGAAAAGGACAGACTAGAGGAAAAACAGAGAGCTGCATGCAAATAACCTTCTAAGGATGGAGAAGAGTGGTCAACCAGGTGGTTTCGGGTTGGGAACAAACCCCCAGGAATGACTGTACACGGGGGATACTTTGATAGGAATTACACTGTCCCAACATTTACTGATTGGTTAGGAGGGACTAGAAGGGTTTCCATTACTACCCATAGTGGATGTAGGCCTGATTATCCTGTTCATTCTCAGTATTACAATGTGAGGCAGCTGAGGACACAATTATGACAGTTTTCCAAACTTAGCCAAACCTCTCCCCCAACAGAATCTCTGAAATCAAGAAATTATGTATGTGACTAAaatgatttattttcattttgcAAGTGAAAAATGGAACATTTGAGCAATCTGAATGTGAAAGACAGAAAATTGAGGATAAGACAGTTAGTTACATGAGGGAAGCAGAATGTTCTGATTTCTATGTTAGTTTTCACAGGTGTCAGTCATCCTAAATGGACTGGCTAATTTAACTGAAAGAATCCCACTCATCTCTGATCGTGTTATTTATTGTACCCATGGTTTTATAAAACTAGGGATTAGTAAGAACAGTGGTTAAAAACAAATGGCAAgagttgtggaacagggagggaaagggaagacacctgtataagatccaggaaGAGGTGGAGGCAGGGAGGTCCCCTGGTCAAGAGAAGGGAGGAAAGTTTAatcacaaggctgagactgggacacacagggtgttacggatacaagtatcctgtgtgtgtatcctctgtgtgtgttttcttttct

Function

NR:

description
PREDICTED: oxysterol-binding protein-related protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474844.2 True 2300 mRNA 0.42 3 59183047 59185601

Neighbor

gene id symbol gene type direction distance location
LOC118966079 NA coding upstream 21299 59158581 ~ 59161748 (+)
LOC110532516 mare3 coding upstream 46204 59132059 ~ 59136843 (+)
LOC110532515 LOC106572465 coding upstream 56072 59109495 ~ 59126975 (+)
ppdpfa LOC106572462 coding upstream 154895 59025174 ~ 59028152 (+)
LOC110532511 LOC106572500 coding upstream 158475 59018838 ~ 59024572 (+)
LOC110531223 LOC106567210 coding downstream 2884 59188485 ~ 59190896 (+)
LOC110532529 LOC106572479 coding downstream 137974 59323575 ~ 59336156 (+)
LOC110532530 LOC106572481 coding downstream 189373 59374974 ~ 59382411 (+)
LOC110532531 LOC106572482 coding downstream 201263 59386864 ~ 59393869 (+)
LOC110532532 LOC106572483 coding downstream 242917 59428518 ~ 59437957 (+)
G824772 NA non-coding upstream 15845 59166907 ~ 59167202 (+)
G824771 NA non-coding upstream 16504 59166339 ~ 59166543 (+)
G824770 NA non-coding upstream 16732 59166099 ~ 59166315 (+)
G824769 NA non-coding upstream 17162 59165591 ~ 59165885 (+)
G824812 NA non-coding downstream 36034 59221635 ~ 59222002 (+)
G824814 NA non-coding downstream 39321 59224922 ~ 59225326 (+)
G824822 LOC106572477 non-coding downstream 51739 59237340 ~ 59299949 (+)
G824800 LOC106572475 non-coding downstream 77448 59263049 ~ 59264785 (+)
fkb1a fkb1a other upstream 326348 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 498537 58684149 ~ 58720758 (+)
LOC110532492 LOC106572441 other upstream 511796 58668090 ~ 58671251 (+)
G824936 NA other downstream 228546 59414147 ~ 59415013 (+)
G825484 NA other downstream 412428 59598029 ~ 59598970 (+)
G825749 NA other downstream 824408 60010009 ~ 60010425 (+)
G826505 NA other downstream 1260429 60446030 ~ 60446534 (+)

Expression


Co-expression Network