LOC110531223 (LOC106567210)


Basic Information

Item Value
gene id LOC110531223
gene name LOC106567210
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59188485 ~ 59190896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110531223
ATGCTTAACATTTTACTAAGAAACAAGAATCGTCGAACTGGTAGGGTGTTTGTGCTGAAGTTCAAGGCTGGCTCCAAGAGACTGTTCTTCTGGATGCAGGAGTCCAAGACTGATAAGGATGAGGAGTACTGCCGTAAAGAGAATGAGTATCTTAACAACCCTAATATGCCTGGATTAAAGAAGGGTACAGTGCACACACTCATAAACAGACATTCTTCTGTCCTAGGCGAGGGTGGACTGCAGAGTCTCCTCAGTAACATGAGTCACAACCAGCTCATGCAGCTCATTGGACCTACTGGACTGGGAGGTCtaggaGGTTTTGGGGCTCTGGCTGGACCGGGCCTGGCCAGCCTGCTAAGTAGTGGAGGTCCTGCAGCCGGCAACTCTTCTTCAAGGTACCACAAGCAAACAGCTGCGGTCACCCCCACCTCTGCTGCCACCTAGCTAGGCTCCTCCCAGGTGCCAACCACACCTATCACCCCATCTGCCACCAGTGCAGTGTCACCCATGGCCTCACCCGCCACCCCTGTTTCCCCCTCCCTCACAGCCGGAGCAGCCAGCCCCACCCAGTCAATCCAGCTGAGTGACCTGCAGAGTATCCTAGCAACCATGAATGTACCTGCAGCCGGGCAGGGAGGTGAagTGAACCTGGCCAGTGTTGTGACCCCTGAGATCATGGCTCCTATCCTGGCCAATGCGGAGGTCCAGGAGAGGCTTCTGCCTTTCCTGCCGTCAGGAGAGGCCCTGCCTCAGAGCACCAACAACTCCACCACATACTCACCTCCCCACAGTTTCAGCAGGCCATGGGTCTGTTTAGTAGTGCCCTGGCTTCAGGGCAGTCGGGGCCTCTAATGAACCAGTTTGGGCTGCCAACAGAAGCTGTGGATGCAGCTAACAAAGGAGACAGAGGCTTTTGCTAAAGCcatggagacagacagcaagTCTGACCATGAGGACGATGATTCCAAAGACAAGGATGATGAAAGATATGAGTTTGGATTTGTACCTGTTAGTCCAGTTTCATTATATTTTATTAACTATTTACTAGCTGATTTGTTATTTAGAGCACTGAAGCAGTCTACCATTTCCTATCAGAATATATATTTAATGGAATGCAAGACACCTACCCTC
>TU937833
TAACATTTTACTAAGAAACAAGAATCGTCGAACTGGTAGGGTGTTTGTGCTGAAGTTCAAGGCTGGCTCCAAGAGACTGTTCTTCTGGATGCAGGAGTCCAAGACTGATAAGGATGAGGAGTACTGCCGTAAAGAGAATGAGTATCTTAACAACCCTAATATGCCTGGATTAAAGAAGGGTACAGTGCACACACTCATAAACAGAGTGCAAAGGTACTGTGGCATGTTGACACAGGAAGCAATGCATTCTCGGAGACGATAGTTCCTTCCCCACTCAGCCTCTCCTTTGTGCATGATGTGTTGATTCATTCGGGAACATTTAGCATTCTTCTGTCCTAGGCGAGGGTGGACTGCAGAGTCTCCTCAGTAACATGAGTCACAACCAGCTCATGCAGCTCATTGGACCTACTGGACTGGGAGGTCTTGATAAgaGGTTTTGGGGCTCTGGCTGGACCGGGCCTGGCCAGCCTGCTAAGTAGTGGAGGTCCTGCAGCCGGCAACTCTTCTTCAAGCCGGAGCAGCCAGCCCCACCCAGTCAATCCAGCTGAGTGACCTGCAGAGTATCCTAGCAACCATGAATGTACCTGCAGCCGGGCAGGGAGTGAACCTGGCCAGTGTTGTGACCCCTGAGATCATGGCTCCTATCCTGGCCAATGCGGAGGTCCAGGAGAGGCTTCTGCCTTTCCTGCCGTCAGGAGAGGCCCTGCCTCAGAGCACCAACAACTCCACCACATACTCACCTCCCCACAGTTTCAGCAGGTACACCAC

Function

NR:

description
PREDICTED: proteasomal ubiquitin receptor ADRM1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110531223 False 1131 mRNA 0.52 8 59188485 59190896
TU937833 True 768 lncRNA 0.52 5 59188490 59190181

Neighbor

gene id symbol gene type direction distance location
LOC110532519 NA coding upstream 2884 59183047 ~ 59185601 (+)
LOC118966079 NA coding upstream 26737 59158581 ~ 59161748 (+)
LOC110532516 mare3 coding upstream 51642 59132059 ~ 59136843 (+)
LOC110532515 LOC106572465 coding upstream 61510 59109495 ~ 59126975 (+)
ppdpfa LOC106572462 coding upstream 160333 59025174 ~ 59028152 (+)
LOC110532529 LOC106572479 coding downstream 132679 59323575 ~ 59336156 (+)
LOC110532530 LOC106572481 coding downstream 184078 59374974 ~ 59382411 (+)
LOC110532531 LOC106572482 coding downstream 195968 59386864 ~ 59393869 (+)
LOC110532532 LOC106572483 coding downstream 237622 59428518 ~ 59437957 (+)
LOC110532533 NA coding downstream 273341 59464237 ~ 59468766 (+)
G824772 NA non-coding upstream 21283 59166907 ~ 59167202 (+)
G824771 NA non-coding upstream 21942 59166339 ~ 59166543 (+)
G824770 NA non-coding upstream 22170 59166099 ~ 59166315 (+)
G824769 NA non-coding upstream 22600 59165591 ~ 59165885 (+)
G824812 NA non-coding downstream 30739 59221635 ~ 59222002 (+)
G824814 NA non-coding downstream 34026 59224922 ~ 59225326 (+)
G824822 LOC106572477 non-coding downstream 46444 59237340 ~ 59299949 (+)
G824800 LOC106572475 non-coding downstream 72153 59263049 ~ 59264785 (+)
G824858 NA non-coding downstream 110985 59301881 ~ 59302177 (+)
fkb1a fkb1a other upstream 331786 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 503975 58684149 ~ 58720758 (+)
LOC110532492 LOC106572441 other upstream 517234 58668090 ~ 58671251 (+)
G824936 NA other downstream 223251 59414147 ~ 59415013 (+)
G825484 NA other downstream 407133 59598029 ~ 59598970 (+)
G825749 NA other downstream 819113 60010009 ~ 60010425 (+)
G826505 NA other downstream 1255134 60446030 ~ 60446534 (+)

Expression


Co-expression Network