LOC110532529 (LOC106572479)


Basic Information

Item Value
gene id LOC110532529
gene name LOC106572479
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59323575 ~ 59336156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616512.2
CGAATTCCCTCAAGGACAGTCTCGATGAGGAGGAGCGTAACTGGGGTTGTCACAGCGTGTTTCCGGTAAAACCAGGCCGAGAGAGACGACAATAatctatgtagctagctagctactgaaaaTAAAGAACCGTATATAAAGAGTTGTCGACTTTGTTCGACAACGTCTCACATTTGCTAAACCTTTACAAATAGATATCGACTGGTCGTCGGGAAAAGAGGCGGCTGTAGCACGGCAATGGAAGCTGAGTTTCGGGGAATCGATGAACCCGGGAGTTGGAACGCCATTTACCAGGAAATCCGTCAGCAATCAAGTGAGCTGCCCTGCAAACTTGCTAAATTACCTGAAAACAAAACTCGGAATCGCTACAGAGATGTCAGCCCATTTGATCACAGCAGAATCCGCCTGCAACTGGGTACGAACGACTACATTAACGCAAGCCTAATTTCTGTAGAAGAGGCACGGAGAAGCTACATTCTTACTCAGGGGCCCCTTCCAAACACATGTGGTCACTTCTGGGAGATGGTGTGGGAGCAGAGGACCATGGGAGTGGTGATGTTGAACCGTGTCATAGAGAAAGGATCTGTGAAGTGTGCCCAGTACTGGCCGCCTAGAGAGGTGAGGGAGGCGGTTTTTGAAGACACAAATTTCAAGCTAACGCTTGTTTCAGAAGACatcaaatcctactacactgTCCGTCAGCTGGAGCTAGAAAATCTGTCGACTCGGGAAACTAGAGAGATCCTACATTTTCACTACACCACCTGGCCTGACTTTGGTGTGCCCGAATCTCCAGCCTCCTTCCTTAACTTCCTGTTCAAGGTGCGGGAGTCTGGGTGCCTCAACTCTGACCAGGGGCCTGTGGTGGTGCACTGCAGCGCAGGCATCGGACGCTCGGGAACCTTCTGTCTTGTCGACACTTGCCTGTTACTGATGTCCATGCGCAAGGACCCGTCATCTGTGCACATTCGTGACGTACTGCTGGAGATGCGACGATATCGGATGGGCCTGATTCAAACACCTGACCAACTCAGATTTTCCTACCTCGCTGTTATTGAAGGTGCCAGGTGCATCATGGGAGATGCATCATTGCAGGAGTCGTGGAAAGAGCTCTCCAACGAAGAGGACGTTCCTGCAGAGTTCACACCTCCCCTGCCCCACCCCCGTCCTCCAGGTCTATCTGTCAACGGCACGGTTGAACCCATCTCATTTTTTCCTGAGATTGTTGTTGCGCAGAACGATTCCCACACTCGCAGTGCCCCACCAGAGACTGAACTGCGATGGAGGGGCAGTGGTGAAGGTGCTACCGCCCAGTCGCAGTCTTCCACTGTATCCAGTGATCAACCTGATGGCCAGGCGGGAAGCAAAGAACCAGCTCCCAAAGCTCCTACGAAACCCCACCGGCTGCATGAGCCAGAAAAACAGCAGGGGCTGAACCAGGACCAGGCAGCTGAGCAGGCAGCAGGAGATGATAGCCCTGAGGCTCTAGGGGCCTGGAACCCCCTGCTGGCCAATGTTTGCCTCTGCACTGCCCTGGCCCTGGGTGCTTATGTCTGTTACCGGGCCTGTTTCCACTgatctcctctaccctcctccctctcttgctcctccCTTTCTCTTGTCTGTTTTTTTTGCAGGGTGAATTAGGCTGGCCAGCCGGCCCTCTCTGCCTATGGTTTTACTCTGCTGGCTGGGCAAGTGGATTGTTTGGACTTCAGAGAATCGATTGATTCAGACTCACTCGTTTTCTTTACAAATGCGGAGCAGGGGTGTGGGGGGGAAGGGACTGCCTCTTTTTCCTCGTCACCCACCGTAGCTCTCATATGAACTGTCAGTTTGGACGCTCAGGGTCTCAATTTTCAGGTATCACATCCCAAATACACGTGTTGATTTTCAAAACAAATGAGTAAACAAATGTTTCTTTCTAACCGTCAGTAAATTAAGGTGTTTGTTCCTGTGTTCTGTGAGCTGAATGGTCTACTAGTAGTCTACCCTACCGGGACACACGCACCTTCTATTCAGTTACCAAATAACACGCAAATGTGTTATTCTGTTTCAGCCTTTGCAAAAAAATGTCAGTTGGCTATTCACCTTTCTCTCCCAAATAGTCCTTTCCTTTGCAGTTCTTTACAATTGTTCTGGAGGAGTTACAGTGCTTGGTTTGTGGCAACCCTGCAGTGCCAACGTAATGAATTGCTGCAGAGATGTTAGTGAAAAGAAAAGACAATCTTGAGATGATGGGGCAGTAATATACCCAGGAGTAAGCTGAGGCTAAGTGGTGGCCACCATCTGAGGGAGACACTGCACTCCTCTCCTTCTACTGGATGAGGGGTGCATTCAGTGGGTTATTTACAGGCCATAGGAGAGCTCCCTACCACTTCCCTGTTTAGGGTCTTTTGGCTAAAGCTACAGGAGgcacactgtatgtgtgtgtgtgcaagtgttaAGTGTTATCTGGGCTTTCTACTGATGCATGATTTCTATCTGCTGTCTTAGTGGGAAACATCACAAGCTAATAATAAgttatattttaaatatattcTAGATTGTTTCCTGGTTCTTGACCCTGACCCCCACCACGTATTAATTTCAAACTTTACATTTAAACAGGAGTGTCTAGTTGATGATGTGCTTTGAATGGAAGTGCTGCACGCATGTATTGAGCTGTTCTTTTTTTGCATAGTTTGAGGTGTTGCGTTCACATTTTAGCCCGTTTTCAAAAAATgtacaaatgtcatatttttaTGTATTTTGGCTGAAGTCTGCTATAAAGGAGTCTCCAATGATTTCGCAACATTTGTTTAACCCATTAGATATACAGTTTTATTCAGGGATGGTGACTTCTAGCAGTCCCCACTTTGGATGAACAATGCAGAGGCTTTTTCATACTAAAGAAACAAACTGGGTGAAATGCATCAGGTGAGCATTGCATCTGAACACAGGAGGTTGCATTAAAATGCCAGCTCAGCATACTGTATGGAGATAAAGGCAGCAGTTAACCCTCCTCTCCCTTAGCTAGCAATACAAATACCATCAGCCTTTATTTTCCCAGCCTCTGAAACATAAAACCCATTCTACCTGTCTGGACAGGGAGCCTGCGATCTCAAACCAACTTACAAACACCAGCACAGGGATTAAAACACTGTAATGATCAGTTATGGCCTGGGCCGTCAGTTTTAGTTAACTTTTTTCCACAAAGATGTCCTGCCCTTGTGAATGAACACGTTTTTCATGAGATTAGTTCAGCTACTAGCATTCAGTTTACCTTTGACTCAAAAAGAACTACGTATATCCTGAGTCCAATGGCTGTACCTTTTCTCTGGAATGTATGATGTCCTACCCATGGACATGCCCTCTTGATACTTTAAAAAAGTTATTTGGATCAGATTTTAGTCTGCTGACTTTTTTTTAAAATGCATTTACAAGTAATGATGAACTCACAGTACCTACCTGGGCAGCTTTGTGTTTGCCCAGATGTTCCTGTTTTTCTGTACTTATGCTCACCAACctttttgttttttattatttacATCCATTGTAttcctttttttaaataaaaaaatctactgCTGA

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 1-like

GO: NA

KEGG:

id description
K05696 PTPN1, PTP1B; tyrosine-protein phosphatase non-receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616512.2 True 3573 mRNA 0.46 9 59323575 59336156

Neighbor

gene id symbol gene type direction distance location
LOC110531223 LOC106567210 coding upstream 132679 59188485 ~ 59190896 (+)
LOC110532519 NA coding upstream 137974 59183047 ~ 59185601 (+)
LOC118966079 NA coding upstream 161827 59158581 ~ 59161748 (+)
LOC110532516 mare3 coding upstream 186732 59132059 ~ 59136843 (+)
LOC110532515 LOC106572465 coding upstream 196600 59109495 ~ 59126975 (+)
LOC110532530 LOC106572481 coding downstream 38818 59374974 ~ 59382411 (+)
LOC110532531 LOC106572482 coding downstream 50708 59386864 ~ 59393869 (+)
LOC110532532 LOC106572483 coding downstream 92362 59428518 ~ 59437957 (+)
LOC110532533 NA coding downstream 128081 59464237 ~ 59468766 (+)
LOC110532534 LOC106572504 coding downstream 142071 59478227 ~ 59480332 (+)
G824858 NA non-coding upstream 21398 59301881 ~ 59302177 (+)
G824822 LOC106572477 non-coding upstream 23626 59237340 ~ 59299949 (+)
G824800 LOC106572475 non-coding upstream 58790 59263049 ~ 59264785 (+)
G824814 NA non-coding upstream 98249 59224922 ~ 59225326 (+)
G824812 NA non-coding upstream 101573 59221635 ~ 59222002 (+)
G824921 NA non-coding downstream 46942 59383098 ~ 59383402 (+)
G824934 NA non-coding downstream 76796 59412952 ~ 59413227 (+)
G824967 NA non-coding downstream 124194 59460350 ~ 59460837 (+)
ppdpfa LOC106572462 other upstream 295432 59025174 ~ 59028152 (+)
fkb1a fkb1a other upstream 466876 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 639065 58684149 ~ 58720758 (+)
LOC110532492 LOC106572441 other upstream 652324 58668090 ~ 58671251 (+)
G824936 NA other downstream 77991 59414147 ~ 59415013 (+)
G825484 NA other downstream 261873 59598029 ~ 59598970 (+)
G825749 NA other downstream 673853 60010009 ~ 60010425 (+)
G826505 NA other downstream 1109874 60446030 ~ 60446534 (+)

Expression


Co-expression Network