LOC110532530 (LOC106572481)


Basic Information

Item Value
gene id LOC110532530
gene name LOC106572481
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59374974 ~ 59382411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988539.1
AATCGTTGTGCAACATCATGGGCGTTAAGGTTCCTCGTAACTTCCGGCTGCTTGAAGAGCTGGAAGAAGGCCAGAAAGGTGTGGGGGATGGGACAGTGAGCTGGGGCTTGGAAGATGATGAGGACATGACCTTAACAAGATGGAGAGGGATGATCATTGGCCCTCCTAGGACAATCTATGAAAATAGGATGTACAGTCTGAAGGTTGAATGTGGGCCCAGATATCCAGAGGCACCACCATTTGTCAGATTTGTAACTAAGATAAACTTGAATGGTGTGCACAACTCCAATGGTGTGGTTGACACACGAGCAGTGTCTGCACTGGCCAAGTGGCAGAACTCCTACAGCATCCGTGTGGTCCTGCAGGAGCTCAGGCGGCTCATGATGTGCAAGGAGAACATGAAGCTCCCCCAGCCACCAGAGGGCCAGATCTACACCAACTGAGCCCATGCTactactctccttctccttttccctcttttGTTTGCGTTCATCCTTTCATCCCATCCACCACCTCCCTTCTTATTTTAATTAATTTGCCAGCCAACACTCAAGCGCACACACAGGGACGTACGTGTGGCCGAACACACGAATGCAGACACCCACAAACATGCAATCACTTCTACATGCGCCATTCTCAGGCCCTGGCCCCTCCCCTTTCCATCACTGGAGCTCTGGTTGGACTAGAGAAGACTAGGTAGGCAGTCATCGGTCCAGCCCTGATCATTTGAATACTGTACATCATACTAATCTTTTTTTATTATTTGTTATAAATGCAGATTGTACAATAACATAAATAATCTTATTGAGTGTA
>XM_021616513.2
TATGTGGATCAATTTACCCCGAGCAAGCGcgttcccatctctccgctcccaTGCTGCAACCAACCATGCTTACGTGCGCGCTCCCGCTACTAAGCGACAAGATGGCGGTCGCCGCCGGATCAGGCGTTAAGGTTCCTCGTAACTTCCGGCTGCTTGAAGAGCTGGAAGAAGGCCAGAAAGGTGTGGGGGATGGGACAGTGAGCTGGGGCTTGGAAGATGATGAGGACATGACCTTAACAAGATGGAGAGGGATGATCATTGGCCCTCCTAGGACAATCTATGAAAATAGGATGTACAGTCTGAAGGTTGAATGTGGGCCCAGATATCCAGAGGCACCACCATTTGTCAGATTTGTAACTAAGATAAACTTGAATGGTGTGCACAACTCCAATGGTGTGGTTGACACACGAGCAGTGTCTGCACTGGCCAAGTGGCAGAACTCCTACAGCATCCGTGTGGTCCTGCAGGAGCTCAGGCGGCTCATGATGTGCAAGGAGAACATGAAGCTCCCCCAGCCACCAGAGGGCCAGATCTACACCAACTGAGCCCATGCTactactctccttctccttttccctcttttGTTTGCGTTCATCCTTTCATCCCATCCACCACCTCCCTTCTTATTTTAATTAATTTGCCAGCCAACACTCAAGCGCACACACAGGGACGTACGTGTGGCCGAACACACGAATGCAGACACCCACAAACATGCAATCACTTCTACATGCGCCATTCTCAGGCCCTGGCCCCTCCCCTTTCCATCACTGGAGCTCTGGTTGGACTAGAGAAGACTAGGTAGGCAGTCATCGGTCCAGCCCTGATCATTTGAATACTGTACATCATACTAATCTTTTTTTATTATTTGTTATAAATGCAGATTGTACAATAACATAAATAATCTTATTGAGTGTACATGTTGTGTGCTGCCTTTTTGTAATAGAGAGGACCCTCCAGCGATTATGCAAGTATTTGTGGATTTTGTTCAGTGCAAGATATAAATTAGATAAGAAAAACGTATCAGGTTCTAAACATAAAGTTCAACCAGTCAATTTACCTCCCCATTGATTTAGAGAGCTTGACCCAAGAAATATGTTAAGATATTGCTtgggtgttttttgggggggctttATGCATGTGTAACTTGTATAGCAATTTATTTACGGGCTCCACTGGAAATGCATGTGACTGCAGCAGCTTATAGCAAGATCCCTGAAGTAGTATGCCCTTCAAGCTGTCACTTTAGTCAACACACACCTGGCCATGACAGAGACAACCACTGATATTTAGCGTCCTAtataattatttatatatttttttaagataCCGGAAATGTTTAGTTCATAAGTGTCATTGGGTGTAAAACATAATACAATAATAACATATGTCATCTGAAAGGATTCACACGCCAGAACCTGCAACCATTTAAGCTAACAACCCTTGAATGGAGAATTTGAATTGGCTACCTCTTTTGGTCCTTAGTTGGAGAGTAGAATTGACCAATAGTCATGTCTTTTTATGGGTTTTTTTCTTCCCCCTTTCCTATCATAATTATTGCATCATGCATTCACACTTATGTATAGTGTCTATATTCCAATGGTTCTCACCCCCTGCAGGCATTACCCATGTTTGTTTCAGAATGCAATGTCATAGAGTTTGCCATTCATACACTGTCAGTATGGGTAATGGAACTACATTGATTGTACTTTTACACTATCTTGGTCTGTACAGGatcttttgtatagtgtttgtctGTTCCCCTTTAGTGATCTTACCAAACATGCAGTAAATATCATAGGGTGACCAGTCTTCTGACTATTTGTTTATCACAAGCCAGGTTTCCATCAAATTGGCGAGAGATTTTCATGCTAATATTCTACAATCCACGAAGACAATGTTCACAGCAAAGGGACTTGTTGCTGATAAAAGTCAGTGGGTGATGatgtagtgcacacaaaatgtactttttcgcttaagttttcatgtaccgaataaaaatctaaagttc
>XM_021616516.2
TATGTGGATCAATTTACCCCGAGCAAGCGcgttcccatctctccgctcccaTGCTGCAACCAACCATGCTTACGTGCGCGCTCCCGCTACTAAGCGACAAGATGGCGGTCGCCGCCGGATCAGGCGTTAAGGTTCCTCGTAACTTCCGGCTGCTTGAAGAGCTGGAAGAAGGCCAGAAAGGTGTGGGGGATGGGACAGTGAGCTGGGGCTTGGAAGATGATGAGGACATGACCTTAACAAGATGGAGAGGGATGATCATTGGCCCTCCTAGGGTTGACACACGAGCAGTGTCTGCACTGGCCAAGTGGCAGAACTCCTACAGCATCCGTGTGGTCCTGCAGGAGCTCAGGCGGCTCATGATGTGCAAGGAGAACATGAAGCTCCCCCAGCCACCAGAGGGCCAGATCTACACCAACTGAGCCCATGCTactactctccttctccttttccctcttttGTTTGCGTTCATCCTTTCATCCCATCCACCACCTCCCTTCTTATTTTAATTAATTTGCCAGCCAACACTCAAGCGCACACACAGGGACGTACGTGTGGCCGAACACACGAATGCAGACACCCACAAACATGCAATCACTTCTACATGCGCCATTCTCAGGCCCTGGCCCCTCCCCTTTCCATCACTGGAGCTCTGGTTGGACTAGAGAAGACTAGGTAGGCAGTCATCGGTCCAGCCCTGATCATTTGAATACTGTACATCATACTAATCTTTTTTTATTATTTGTTATAAATGCAGATTGTACAATAACATAAATAATCTTATTGAGTGTACATGTTGTGTGCTGCCTTTTTGTAATAGAGAGGACCCTCCAGCGATTATGCAAGTATTTGTGGATTTTGTTCAGTGCAAGATATAAATTAGATAAGAAAAACGTATCAGGTTCTAAACATAAAGTTCAACCAGTCAATTTACCTCCCCATTGATTTAGAGAGCTTGACCCAAGAAATATGTTAAGATATTGCTtgggtgttttttgggggggctttATGCATGTGTAACTTGTATAGCAATTTATTTACGGGCTCCACTGGAAATGCATGTGACTGCAGCAGCTTATAGCAAGATCCCTGAAGTAGTATGCCCTTCAAGCTGTCACTTTAGTCAACACACACCTGGCCATGACAGAGACAACCACTGATATTTAGCGTCCTAtataattatttatatatttttttaagataCCGGAAATGTTTAGTTCATAAGTGTCATTGGGTGTAAAACATAATACAATAATAACATATGTCATCTGAAAGGATTCACACGCCAGAACCTGCAACCATTTAAGCTAACAACCCTTGAATGGAGAATTTGAATTGGCTACCTCTTTTGGTCCTTAGTTGGAGAGTAGAATTGACCAATAGTCATGTCTTTTTATGGGTTTTTTTCTTCCCCCTTTCCTATCATAATTATTGCATCATGCATTCACACTTATGTATAGTGTCTATATTCCAATGGTTCTCACCCCCTGCAGGCATTACCCATGTTTGTTTCAGAATGCAATGTCATAGAGTTTGCCATTCATACACTGTCAGTATGGGTAATGGAACTACATTGATTGTACTTTTACACTATCTTGGTCTGTACAGGatcttttgtatagtgtttgtctGTTCCCCTTTAGTGATCTTACCAAACATGCAGTAAATATCATAGGGTGACCAGTCTTCTGACTATTTGTTTATCACAAGCCAGGTTTCCATCAAATTGGCGAGAGATTTTCATGCTAATATTCTACAATCCACGAAGACAATGTTCACAGCAAAGGGACTTGTTGCTGATAAAAGTCAGTGGGTGATGatgtagtgcacacaaaatgtactttttcgcttaagttttcatgtaccgaataaaaatctaaagttc
>TU937938
GCTCCCGCTACTAAGCGACAAGATGGCGGTCGCCGCCGGATCAGGCGTTAAGGTTCCTCGTAACTTCCGGCTGCTTGAAGAGCTGGAAGAAGGCCAGAAAGGTGTGGGGGATGGGACAGTGAGCTGGGGCTTGGAAGATGATGAGGACATGACCTTAACAAGATGGAGAGGGATGATCATTGGCCCTCCTAGGACAATCTATGAAAATAGGATGTACAGTCTGAAGGTTGAATGTGGGCCCAGATATCCAGAGGCACCACCATTTGTCAGATTTGTAACTAAGATAAACTTGAATGGTGTGCACAACTCCAATGGTGTGGTTGACACACGAGCAGTGTCTGCACTGGCCAAGTGGCAGAACTCCTACAGCATCCGTGTGGTCCTGCAGGAGCTCAGGCGGCTCATGATGTGCAAGGAGAACATGAAGCTCCCCCAGCCACCAGAGGGCCAGATCTACACCAACTGAGCCCATGCTactactctccttctccttttccctcttttGTTTGCGTTCATCCTTTCATCCCATCCACCACCTCCCTTCTTATTTTAATTAATTTGCCAGCCAACACTCAAGCGCACACACAGGGACGTACGTGTGGCCGAACACACGAATGCAGACACCCACAAACATGCAATCACTTCTACATGCGCCATTCTCAGGCCCTGGCCCCTCCCCTTTCCATCACTGGAGCTCTGGTTGGACTAGAGAAGACTAGGTAGGCAGTCATCGGTCCAGCCCTGATCATTTGAATACTGTACATCATACTAATCTTTTTTTATTATTTGTTATAAATGCAGATTGTACAATAACATAAATAATCTTATTGAGTGTACATGTTGTGTGCTGCCTTTTTGTAATAGAGAGGACCCTCCAGCGATTATGCAAGTATTTGTGGATTTTGTTCAGTGCAAGATATAAATTAGATAAGAAAAACGTATCAGGTTCTAAACATAAAGTTCAACCAGTCAATTTACCTCCCCATTGATTTAGAGAGCTTGACCCAAGAAATATGTTAAGATATTGCTtgggtgttttttgggggggctttATGCATGTGTAACTTGTATAGCAATTTATTTACGGGCTCCACTGGAAATGCATGTGACTGCAGCAGCTTATAGCAAGATCCCTGAAGTAGTATGCCCTTCAAGCTGTCACTTTAGTCAACACACACCTGGCCATGACAGAGACAACCACTGATATTTAGCGTCCTAtataattatttatatatttttttaagataCCGGAAATGTTTAGTTCATAAGTGTCATTGGGTGTAAAACATAATACAATAATAACATATGTCATCTGAAAGGATTCACACGCCAGAACCTGCAACCATTTAAGCTAACAACCCTTGAATGGAGAATTTGAATTGGCTACCTCTTTTGGTCCTTAGTTGGAGAGTAGAATTGACCAATAGTCATGTCTTTTTATGGGTTTTTTTCTTCCCCCTTTCCTATCATAATTATTGCATCATGCATTCACACTTATGTATAGTGTCTATATTCCAATGGTTCTCACCCCCTGCAGGCATTACCCATGTTTGTTTCAGAATGCAATGTCATAGAGTTTGCCATTCATACACTGTCAGTATGGGTAATGGAACTACATTGATTGTACTTTTACACTATCTTGGTCTGTACAGGatcttttgtatagtgtttgtctGTTCCCCTTTAGTGATCTTACCAAACATGCAGTAAATATCATAGGGTGACCAGTCTTCTGACTATTTGTTTATCACAAGCCAGGTTTCCATCAAATTGGCGAGAGATTTTCATGCTAATATTCTACAATCCACGAAGACAATGTTCACAGCAAAGGGACTTGTTGCTGATAAAAGTCAGTGGGTGATGatgtagtgcacacaaaatgtactttttcgcttaagttttcatgtaccgaataaaaatctaaagttcca

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 variant 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988539.1 False 813 mRNA 0.48 4 59374974 59381316
XM_021616513.2 False 2008 mRNA 0.43 4 59377027 59382409
XM_021616516.2 False 1882 mRNA 0.43 3 59377027 59382409
TU937938 True 1931 TUCP 0.42 4 59377106 59382411

Neighbor

gene id symbol gene type direction distance location
LOC110532529 LOC106572479 coding upstream 38818 59323575 ~ 59336156 (+)
LOC110531223 LOC106567210 coding upstream 184078 59188485 ~ 59190896 (+)
LOC110532519 NA coding upstream 189373 59183047 ~ 59185601 (+)
LOC118966079 NA coding upstream 213226 59158581 ~ 59161748 (+)
LOC110532516 mare3 coding upstream 238131 59132059 ~ 59136843 (+)
LOC110532531 LOC106572482 coding downstream 4455 59386864 ~ 59393869 (+)
LOC110532532 LOC106572483 coding downstream 46109 59428518 ~ 59437957 (+)
LOC110532533 NA coding downstream 81828 59464237 ~ 59468766 (+)
LOC110532534 LOC106572504 coding downstream 95818 59478227 ~ 59480332 (+)
LOC118966188 LOC106572505 coding downstream 105634 59488041 ~ 59492053 (+)
G824858 NA non-coding upstream 72797 59301881 ~ 59302177 (+)
G824822 LOC106572477 non-coding upstream 75025 59237340 ~ 59299949 (+)
G824800 LOC106572475 non-coding upstream 110189 59263049 ~ 59264785 (+)
G824814 NA non-coding upstream 149648 59224922 ~ 59225326 (+)
G824812 NA non-coding upstream 152972 59221635 ~ 59222002 (+)
G824921 NA non-coding downstream 689 59383098 ~ 59383402 (+)
G824934 NA non-coding downstream 30543 59412952 ~ 59413227 (+)
G824967 NA non-coding downstream 77941 59460350 ~ 59460837 (+)
ppdpfa LOC106572462 other upstream 346831 59025174 ~ 59028152 (+)
fkb1a fkb1a other upstream 518275 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 690464 58684149 ~ 58720758 (+)
LOC110532492 LOC106572441 other upstream 703723 58668090 ~ 58671251 (+)
G824936 NA other downstream 31738 59414147 ~ 59415013 (+)
G825484 NA other downstream 215620 59598029 ~ 59598970 (+)
G825749 NA other downstream 627600 60010009 ~ 60010425 (+)
G826505 NA other downstream 1063621 60446030 ~ 60446534 (+)
G826653 NA other downstream 1180671 60563080 ~ 60563397 (+)

Expression


Co-expression Network