LOC110532531 (LOC106572482)


Basic Information

Item Value
gene id LOC110532531
gene name LOC106572482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59386864 ~ 59393869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616517.2
agcctggattcaaatcagggtgtctgtagtgacacctcaagcactgagatacagtgtcttagaccgctgcgtcactcgggagggaTCCCTGATATTGTTATTGTTCCCATGGACTATTGTTGTTGGTTAAAGGATAAAGCGGTGTAGGCCTATAAAAGTTCATGTGAATCTCAGTTAGTGTTCACCAGAGTCATTATTGGTCAAAGATGTTGAGTAGATGCCCTCTCATGTCTTAATCAATGTATATTCTGACGGTCAATAAACAGATAGATTTTTGTTGGATATTATTGTTATGATTAAAATGACCATACCACATCCCaatcatttacacacacacaaacacacacaccctgggttGTATTACCTGACTACCTCTGATATAAGCAACCTCGCTTTCTTCCTGAATTTCCCATTCACATAATTGTTGAATGAGATGAGGGACCATAGGTCTCCCATTAGTCTCTCGGGGCTGGGCAAGCAGAGGAAAGGGGACGTCCCATCTCTACTATGTATCTAACTTTATGGCTGTTGTACAGATTTAAAAAGGACACAGCTGCACAGCTGCTCAGTTTACTCTTACACGGTGGAGCTGACTGCTGGACTGGACTCTGAACTACCCACAAGGCACTAGTTCCCTAGTTCTCCTCCAGCCTGTGTGTGAAGGAGAAGCCAGTGGCATTGTCCCAAAGGTCTGTATataagatgagagagggagggtgttGGATTCCTCAATAAGGCATCCATTCAGTGGCTCAAGAAACCTGCTCTGAAGGCTGGCCAGGTTGAAACTGTTCAATCAGATATATCCTCACTTCAGATAAGAAGTTCCTCCTCCAAAAGACTACCTCACATCACCTGACCTGACGGTGACCAGCTACAATACAGCCATGTCTCTGCTGGTCCATGTTCTGGCCTGCTGCTTCGGACTGGGCTCCTGGGTGGCTGTCAACGGCCTGTGGGTGGAGCTCCCCCTCATTGTCAACACCCTCCCTGAGGGCTGGGAGCTACCATCCTACCTGACAGTCATCATCCAGCTGGCCAACCTGGGGCCTCTGCTGGTCACTGTCATGCACAAGCTGTGTCCGGGCCGGCTGAGGGAGAGCGCTGTCATCTACAGTGTGTTGTCCATCGGCATCCTGGCCTGTGTACTGTTGGCGTTCTTCTGGGATGAGACCACGGTTGTGGCAACGGCACCACGGAGCACAGTCTTCTTTATTCTAACCCTTTTCCTGGCCTTGGTGGATTGTACTTCCTCTGTTACCTTCCTGCCCTTCATGATGCAGCTGCCAGCCCACTACATCACCACCTACTTCATTGGAGAGGGCCTGAGTGGCTTTATCCCTGGTCTAGTTGCTCTTGGCCAGGGCGTCGGCATGGCCAAGTGTGTAAATGGCACTCAGTCCTCTGGTAACCTCACTGAAAAGGACATGTACATTGTCCAGACCCAGTATCTACAGCCCAACTTTTCCCCTGaggtgtttttcttcttcttggcGGCGATGATGTGCATCAGCCTGCTGGCGTTCTCTGCCCTCAACAGGTTCCCACGCAGCTTTGAACTGTCCACAGAGAACCTAGTTTCAGACACTGACACAGTGGCGTCGGTCTGCTTCGGTCTCGACAACCCTGGAGTGGTAACCGACGAGCAGAACTCTAACCCAAAACCCCACAGTGAGGAATCAGGTCAGGCTAGGCCACAGCTGGCTAAACCACTCCACTCTGTTTATCAGTTAGCTTTTATCTATTTCATGGTGGTCTGTGTGAACGGGGCAACCAATGGCCTGCTGCCCTCGGTGCAGACGTACTCCTGCATGCCCTACGGTAACCTGGCTTATCACCTGTCGGCGGCTCTGGCATCCTGTGCCAACCCAGTGGCCTGTATAGTCGCCCTGTTCTTTCCTAAAagGTCACTAGTGTTGCTGGGTGTACTGTGTCTCCTGGGCTCAATCTTTGGAGGATACAACATGGCCATGGCCGCCATGAGTCCATGTCCACTACTACAAGGCTCTGCGCTGGGAGAAACCATCATAGTTCTGTCGTGGGTCTTCTTTACGGGGACCCTGTCCTATGTGAAGGTAATGGTGGGTGTCATCCTGAGGGACGAGAGCCACAGCGCCCTGGTGTGGTGTGGAGCAGCGGCACAGACAGGCTCTCTGCTTGGCTCTGCCATTATGTTCCCTTTAGTCAATGTCTGCAACCTGTTCAAGTCAGGAGACTTCTGCAACACTAGGTGCCCTTTATGATAATGACTTATACCCGAGACACTAACATACCCACTGGTAAGTAGCCTTATCcgagccagaacggcccatacGGCAGGAGCTTATCtcttgtttctgtagtgagagGCAGCTTGAtatacaagtacaccccctggacaggagtACCTGCTGGTACCTATACCCACTGGGGTGATGTGTGAATAATGTGGGGGTCAAGGAAAAGACAATGACAGGACAATGACGTATCTGGCCTCAGATTAGAGATTGGACTCTAAGGATGTCTTCAAGGGCACCCGGTGGTGAGAAAAAAATCTGCCTGGATCAATGGAGTAAAGTATAAGATTTCAAACTGTTGTTCAGTTAATAATTGTATGTATTTCTATGCAGTATGATTCACAACCCACACTCAAAGGGTGTTGGAGCAATTGTTGTAAATATCTGCATTATTAACCTCATCTTATTTCAAATATATGGTTTGAAACCATTACTTGTTGAATAATTGGGAATTTAAGGAAACAAGCAGAATCCAGATTCATGTTTGGTTTGTAATTACTAGTTATAGTGCCATGAAAATGTTTATTATTGAATTAACCTTagatttacactgagtgtacaaaacattaagaacacctgctctttccatgagatagactgaccaggtgaatcaaggggaaaacttattgatgtcacttttaAATCTAATTCAATCAGTCTAGGTGAAGGggatgagacaggttaaagaaggaattttaagacaattgagacatagattgtgtatgtgtgccattcagaaggtcaATGGCAAGATaaaagtgtctttgaacaggggtatggtagtaagtacCAGttacactgctgggtttttcatgctcaacagtttcctgtgtgtatcaagaatagtccaccacccaaaggacatccagccaagtatTGGCGTCAACATGGCCAGCTTCCccgtggaacacttttgacatcCATGTCCCGACAAGTTGAGGCTTTTCT
>XM_036988541.1
TACTTATTTATCTTCTTGGTTCCTATGAGATGTATTTGAAATGTAATATTGCCTTATGGTCATGCAATGGAACAATCATGGAAGTTAAAGTGTGTCAATTTCAAATCAATATTGTAAAGAAGGTATTTTTCAGGCAGATTCTGATTATCCGTTCCCCTGACAAAAGATAATAGTGATCAATATGAATTGAAAGTTCTTGCAGTTCACACTGACCCTCTACATTACTGTAACACATGGTGCTTTGTAAGCCAGATACACAGTATGTAATGGTATTGGCTCTGACATTGTCTCATTTGTTAGGCCGAACATCATAAAATCCTGTGTGGAAGCTAAATGCCTGTCTGATTTTCACTAGCAGAGATAGGAAATGAGCAGGGCCATGTAAACTAAATTGTGCTAAGTGgtatccttgggatgtccctgcCCTAAACCTTAACCATAACTGTAActcctaacctcaacccctaaccttaacccttccttTAACCCTTCTTTTAACTGTTTTAAATTTAAATGAACCATTTTAAATTTCAAGTGATGTTGGTTCCCACTTAGACTTCCCAAGGATCCCTCTTAGACTTTTCCATTGTGCAGTAACAATGTTAACTTTTTAAAGTAAAAGAGGAGACTTGAGTTCCAGAAGTAAAAGTTTTAATACAGAGCTTTGAGGTGCAGGTGGTCATGCGAAAATACACATGCTAATAGCACCAGTTCCTTAAAAGCCACAGCTAGTAAATATAAAGCAAAGGATGTCTCAAGACTAATATAGTCAATATTAATTGTGTATACATGGCATCGTTACAGACAATGGTTGATATGAAACTGATAAAATGTTTAGCTGAACAATGAGAAGAGTGAAACATTTGCTACTTTGGGTACAGAGAGTGAAGTTCAGCAGCTTGAGTTCAAGGTTTGGATTGTCACGAGTTGAGACCTCTGAGAAGTGTGTGTCCTGTATGATCTGGGTCGTAGTTAGGCATCCGGCTGGCCCCCACAGCCATATGGTACGTTGTGTTTCTAGAGGGAAGTGAAAATTACTTCAGCTGCTTGACATGTAAGAAGAATGCGTTGAGTAGACTGAATACTTCTCTGTTACAATTGCTAGTATTGTCTCAAGGTTTCATGGTCTCATCTCTGTATAAATGAAAAATACAATACATCTGATTCTCATTACTCCATCTACACAGTTAGTTAGATAGTTGTCTTTgacttacatttattttttagatttaacatacagtataacatttAGGTAATCAAAGTGTAACTAATTAACTAAACCAGTCATTTCAAAGTTGGACGTGTGACATTTGCACCCTTGAGCAACAACACCCTGTGCATAAATTACAGGGCCCACAGAGAGCATCAGAGTTGAAACAGTTGACCTAGATCTGCTTATGCCAGGTTGCTTCACCCTGTGTGACTCACAGCTAAAGTGTAAAACAGTAGGGTTAAAAGCTGTTTGGCAAAAAGTTAAAGATCAAATTCCAATGACAAAATGAATGCACATTCAATAACAGGGCACGTATCcacaaagagtctcagagtatgagtgctgatctagaatcttTCTAtttaatctgattcattatgatctaaaaggcaaaactgatcctttGATTTGTAAACCCACAATAACAATGTGATATTTAGTCTTGGTTATACAGTAACGATGGTCATGGTCTAGGCCAGTAGTTCCCAAAAATGAAAAAGGAACTCAGTCTGGCTTTCAACTTACTCCTGAAAGTTGCAataatgcacaaggtgcaattttgaaattgaTAGTGCATCAGCGGTTTCCAGTGTTCCCTAATGCTGGAAGGGGAGCCTGAGTGAAAAtgtttgggaacccctggtctAGGCTAGGGTTAGGCCTACTTGATGATAGATCCTTGCAGAGAGATTTGGTACTATAATACTACGTCTAATATTATTATTGTCTTACTCATTTCATCCTCGATCTAGCTTGATAGTTTTAGCAGCAGTGTCTTTaagcagtggtgtgtattcatggatgccaagggaagccaggtttTCCCCCAAaatgtgtttcataattttcattcaattcgcaagaggctgaatgtacagTATCTCACCGAAAAAGCATCAGAGCGAGTGAAACAGCTTCCCTCTGTCTCTGaatgtgtagcccatctatctgatgctgtttggtcaaaaagagtatgacattgttgaaACCCGCTACGGGTTGAATGAATGCAAGGGAAACCTGCATTTCACCTCCCTCGATAAAAAAGTATACAATAATAGCCAActagcattgagctaaactgagtgagctcaactgtgaatggtcctggtgcaccaagggaagccagtttggatttggcttcacaccaatcacatcacatcaaaagcTAAATATAATTGACAGAAAACACTTGAATTGTTGTATCTCCTTGTGTCGTTGTCctccagtggctagctagctacctagaaTCGtctctttcctaaattagccatgaatggagatagggatttagactagtggttttacttaattctccgtactggtcATTGATTATaacggcgattctgatccaaccataaatgtatacattgtgcccctggccctTAGAGGATGGAAGTTCAGTATGTAGCTAGATGTTGTAGGCTAATTTTAACTAGCTGGCTCATCATTGCCCAATAAAGGAAGTtgggctagcgagcaagcattcaAGACAGGTAgcataggacaacaaaaactaaaagcgtgtactgtattacacagtcatagaccgtttcgtcaacatgaaagagaggacgatggcagaaccatggacagccacagcatatttagcttacattgattggattaaggtgttttttttatatattttagttgtcactgtattagactaagcatacaGTAGGttatttgatgatgttgaaatgttgaagatTAAATGGTTCTGGAATAGTGGAGgtagctcctgttttctttgaaAGTCTCAGTAACTCTCATTGGTTCTAactcaatagttgtttagtagtctgaaAATATCAGAAACATTAatttgcttgaccatgctgtaggtcatgtaactgtttgctacatgcaatatgctttgtggacttcaccggacagaggttgCTCACGCACCGTTACTGACTTTCAGTATTTGTTAAGATAATCTCTAGTTCTAGTTTTCTCTTTTTCTAGGCTCTGAAGGCTGGCCAGGTTGAAACTGTTCAATCAGATATATCCTCACTTCAGATAAGAAGTTCCTCCTCCAAAAGACTACCTCACATCACCTGACCTGACGGTGACCAGCTACAATACAGCCATGTCTCTGCTGGTCCATGTTCTGGCCTGCTGCTTCGGACTGGGCTCCTGGGTGGCTGTCAACGGCCTGTGGGTGGAGCTCCCCCTCATTGTCAACACCCTCCCTGAGGGCTGGGAGCTACCATCCTACCTGACAGTCATCATCCAGCTGGCCAACCTGGGGCCTCTGCTGGTCACTGTCATGCACAAGCTGTGTCCGGGCCGGCTGAGGGAGAGCGCTGTCATCTACAGTGTGTTGTCCATCGGCATCCTGGCCTGTGTACTGTTGGCGTTCTTCTGGGATGAGACCACGGTTGTGGCAACGGCACCACGGAGCACAGTCTTCTTTATTCTAACCCTTTTCCTGGCCTTGGTGGATTGTACTTCCTCTGTTACCTTCCTGCCCTTCATGATGCAGCTGCCAGCCCACTACATCACCACCTACTTCATTGGAGAGGGCCTGAGTGGCTTTATCCCTGGTCTAGTTGCTCTTGGCCAGGGCGTCGGCATGGCCAAGTGTGTAAATGGCACTCAGTCCTCTGGTAACCTCACTGAAAAGGACATGTACATTGTCCAGACCCAGTATCTACAGCCCAACTTTTCCCCTGaggtgtttttcttcttcttggcGGCGATGATGTGCATCAGCCTGCTGGCGTTCTCTGCCCTCAACAGGTTCCCACGCAGCTTTGAACTGTCCACAGAGAACCTAGTTTCAGACACTGACACAGTGGCGTCGGTCTGCTTCGGTCTCGACAACCCTGGAGTGGTAACCGACGAGCAGAACTCTAACCCAAAACCCCACAGTGAGGAATCAGGTCAGGCTAGGCCACAGCTGGCTAAACCACTCCACTCTGTTTATCAGTTAGCTTTTATCTATTTCATGGTGGTCTGTGTGAACGGGGCAACCAATGGCCTGCTGCCCTCGGTGCAGACGTACTCCTGCATGCCCTACGGTAACCTGGCTTATCACCTGTCGGCGGCTCTGGCATCCTGTGCCAACCCAGTGGCCTGTATAGTCGCCCTGTTCTTTCCTAAAagGTCACTAGTGTTGCTGGGTGTACTGTGTCTCCTGGGCTCAATCTTTGGAGGATACAACATGGCCATGGCCGCCATGAGTCCATGTCCACTACTACAAGGCTCTGCGCTGGGAGAAACCATCATAGTTCTGTCGTGGGTCTTCTTTACGGGGACCCTGTCCTATGTGAAGGTAATGGTGGGTGTCATCCTGAGGGACGAGAGCCACAGCGCCCTGGTGTGGTGTGGAGCAGCGGCACAGACAGGCTCTCTGCTTGGCTCTGCCATTATGTTCCCTTTAGTCAATGTCTGCAACCTGTTCAAGTCAGGAGACTTCTGCAACACTAGGTGCCCTTTATGATAATGACTTATACCCGAGACACTAACATACCCACTGGTAAGTAGCCTTATCcgagccagaacggcccatacGGCAGGAGCTTATCtcttgtttctgtagtgagagGCAGCTTGAtatacaagtacaccccctggacaggagtACCTGCTGGTACCTATACCCACTGGGGTGATGTGTGAATAATGTGGGGGTCAAGGAAAAGACAATGACAGGACAATGACGTATCTGGCCTCAGATTAGAGATTGGACTCTAAGGATGTCTTCAAGGGCACCCGGTGGTGAGAAAAAAATCTGCCTGGATCAATGGAGTAAAGTATAAGATTTCAAACTGTTGTTCAGTTAATAATTGTATGTATTTCTATGCAGTATGATTCACAACCCACACTCAAAGGGTGTTGGAGCAATTGTTGTAAATATCTGCATTATTAACCTCATCTTATTTCAAATATATGGTTTGAAACCATTACTTGTTGAATAATTGGGAATTTAAGGAAACAAGCAGAATCCAGATTCATGTTTGGTTTGTAATTACTAGTTATAGTGCCATGAAAATGTTTATTATTGAATTAACCTTagatttacactgagtgtacaaaacattaagaacacctgctctttccatgagatagactgaccaggtgaatcaaggggaaaacttattgatgtcacttttaAATCTAATTCAATCAGTCTAGGTGAAGGggatgagacaggttaaagaaggaattttaagacaattgagacatagattgtgtatgtgtgccattcagaaggtcaATGGCAAGATaaaagtgtctttgaacaggggtatggtagtaagtacCAGttacactgctgggtttttcatgctcaacagtttcctgtgtgtatcaagaatagtccaccacccaaaggacatccagccaagtatTGGCGTCAACATGGCCAGCTTCCccgtggaacacttttgacatcCATGTCCCGACAAGTTGAGGCTTTTCT

Function

NR:

description
solute carrier family 52, riboflavin transporter, member 3-A-like

GO: NA

KEGG:

id description
K14620 SLC52A3, RFT2; riboflavin transporter 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616517.2 False 3224 mRNA 0.48 4 59386864 59393869
XM_036988541.1 True 5648 mRNA 0.43 3 59387634 59393869

Neighbor

gene id symbol gene type direction distance location
LOC110532530 LOC106572481 coding upstream 4455 59374974 ~ 59382411 (+)
LOC110532529 LOC106572479 coding upstream 50708 59323575 ~ 59336156 (+)
LOC110531223 LOC106567210 coding upstream 195968 59188485 ~ 59190896 (+)
LOC110532519 NA coding upstream 201263 59183047 ~ 59185601 (+)
LOC118966079 NA coding upstream 225116 59158581 ~ 59161748 (+)
LOC110532532 LOC106572483 coding downstream 34649 59428518 ~ 59437957 (+)
LOC110532533 NA coding downstream 70368 59464237 ~ 59468766 (+)
LOC110532534 LOC106572504 coding downstream 84358 59478227 ~ 59480332 (+)
LOC118966188 LOC106572505 coding downstream 94174 59488041 ~ 59492053 (+)
LOC110532535 LOC106572485 coding downstream 112434 59506303 ~ 59520371 (+)
G824921 NA non-coding upstream 3462 59383098 ~ 59383402 (+)
G824858 NA non-coding upstream 84687 59301881 ~ 59302177 (+)
G824822 LOC106572477 non-coding upstream 86915 59237340 ~ 59299949 (+)
G824800 LOC106572475 non-coding upstream 122079 59263049 ~ 59264785 (+)
G824814 NA non-coding upstream 161538 59224922 ~ 59225326 (+)
G824934 NA non-coding downstream 19083 59412952 ~ 59413227 (+)
G824967 NA non-coding downstream 66481 59460350 ~ 59460837 (+)
ppdpfa LOC106572462 other upstream 358721 59025174 ~ 59028152 (+)
fkb1a fkb1a other upstream 530165 58854845 ~ 58856718 (+)
LOC110531219 LOC106572493 other upstream 702354 58684149 ~ 58720758 (+)
G824936 NA other downstream 20278 59414147 ~ 59415013 (+)
G825484 NA other downstream 204160 59598029 ~ 59598970 (+)
G825749 NA other downstream 616140 60010009 ~ 60010425 (+)
G826505 NA other downstream 1052161 60446030 ~ 60446534 (+)
G826653 NA other downstream 1169211 60563080 ~ 60563397 (+)

Expression


Co-expression Network