LOC110532532 (LOC106572483)


Basic Information

Item Value
gene id LOC110532532
gene name LOC106572483
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59428518 ~ 59437957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616518.2
TCTCAGCTAgtctgacagtctctctctctctctctcgctctcactctctcctccctcctccatgctctctctctgtcactctttctctctctcttctctttctctctggtccTTTAAGCCTGCTGCATCACAGGAGCTATCCAGTGCTGAACcaaatattttaaatattttattttttggaaAGCTGGGGATGCCATAGAGAAACACACAGCATTCTCATTCCTTCTCTTATGTCTTTTAGAGGTTGCATTTTCCTTTAACACAAGGATTACTTCTACTGACAGCCGGCTCCAGCTCTGCCTGTTTGCTGATTTCTTTGGGGGTATTACCTTTTCTCTTCATGTGTGATTCTCAGTTCTGTGTGTTTTTTATTCTTTGAAACATGCCCCGTTCGTTTTTGGTGAAGAAAATCAAGCTTGATGATTTCTCTAATCACCATCACCACCTGGACGACTCGTTCACTCCTTTCACACGCTCCATCACTGACTCTGTGACCAGCTTGGGCGTTCGTCTCAGTGAGAATGGCTACATCCAGGATTACATCACACCATCTGTATATCAGGGGGAGACGAAGATGGAGCTCAAAATGGCGTTGCCCGTCTCTGACCCTCTGTACACCCAGGTGAGCAGCAGGGGTGAGGAGTACTGTGACCCTGACCTGGAGCACCCTGACAGCCCCCAGTCCGGCATGACGGCCAGTGGATTCTACAGTGGTGAGGCGGAGGCCCTGACCGAGGGCTACACCATGGATGCCTTCTTCATCTCCGACGGGCGCTCACGGCGGAAGGGAGACGGTGATGGCCGTAAGGGAGGTCGTTCTGGTGCTTCCAATGCTGAtgccacagaggagagagaagcaggggcCACCGGGACAGCCCGTCACACTTGCAACGAGTGCGGCAAGACGTACGCCACCTCGTCCAACCTCAGCAGGCACAAACAGACACACCGTAGCCTGGATAGCAAGATGGCACGCCAGTGTCCCACCTGCGACAAAGTGTATGTGTCCATGCCAGCACTGGCCATGCACATCCTCACCCACAACCTAAAGCACAAGTGTGACGTGTGCAACAAGGCTTTCAGCCGGCCCTGGCTCCTGCAGGGCCACATGCGCTCGCACACCGGGGAGAAACCGTTCGCCTGCGCCCACTGCGGCAAAGCCTTTGCTGACCGCTCAAACCTCCGCGCCCACATGCAAACCCACTCTGCCTTCAAGCACTACCGATGCAAGCGCTGCAATAAGACCTTCGCCCTCAAGTCCTACCTGAACAAGCACTATGAATCAGCCTGCTTCAAGGGTTCCGGGGACGAAGATGATGACGAGTCCTGCTCTGAGAACTAGTTGCCGGAACCAGAAGGACGGAAGCAGAATTTGGAATCCTATACTGTAGGTTCTACAACCAATAACCCCCTTCACTCTGCCCTCCATGcctttttcttcctttttttagAAAGCAATATTTTCACTGAGATTACGTGAAGAAAACTGTTATGATTATGGCAAAGACAATTTCAAAAGATgctggatccccccccccccccccccccaccccccccacccccccaccccaccccgcaCAGTAGCTAATCATCCACAGATACTTACAATCAAAACAACAATCCTCCAAATAAATACTCTAGTTTTtagctcacacacaaacacacacacgcatttgcacacacgctcacacaatTATATATGAGGCCTGGCATGTGATTTTTTTAATCAATGACTATAATGATATTGATATCAATAGTAATACTATTTAGATTCCTGATATTTTATAGAAAATATTACAGGGAAAATGAAGAGGaagaaaaatacataaaaaaggaCTGTAACAGTTTTCTTTTGTTTTTTAGAGACAAAAATGACCTCTTGTATTTTTATGCTGCTTTTTATTTGCTAAGAATTTAATTATTTTGCAACTGCCAACATTCACTTTTTATGAAAATGAGTACTATGACAGTATTTGCATAAAAGGGAAATCATTTTAAAGTTTAAAAAGTACCCTTTTTGTCACACATATGTTTTTAATTCAATGGGTGTTATTTTTCTATTGTCCGACTGAATTTGTTATACATTTTGGTGCCAATTCCTCCTTGATTTTTGAAAGCAAAGCATCTTTGTAACTGTGGGTATTCAGAAAACTTCCAGCAAAACTCATTGAACAAACCTAAAGGCAAACTACATCAGCTGAGTACAATAGGATCATGAACCAGGGTCATTGTCAGTTCCATCAGAGAAGTTGTTTTGAGTTCTTATGGAGACCTGTTGAACAGGTTGTGGAATCACAAGATACCGGAGGCACTCAAAGTACACTCTCTTCATCATACTGGTAACTACAGTTTAACAATAACAACACTGGGAGGAGACAAACCAAATGTACCGATTGGTTGTTATAGGTGCCATGTGCATTGTGCAGTAACCTGTCTATAGCAATGGAAACCATCCCTGTTCTTCCTCCACCACGGTGGCTTGCATGAACTTTGCCACTCTGTGGTGTTTCCCTCAGTCGTAATAAGCAATGTTCATTACACTCTCTGAGGTGCTCTCCCTCTTCTTTTACTGGTATTACCTCAAAAAGGAAAATATATGAGCTCATGACATGCACCCTCAGTTACAAaggaatgttttattttattttatatatgttGCTGAAAGCTCTTTCTACCATTAGATGTATAGCATCCTACTACCTTGTAAATGGTGTATTTATTGATCTATTTATGTAAGTATTTATTTGTCAATGTATTAATGTATTTGTTATTCATATGTTTCTAAATGTATTCATCTATTAATTTATTCATTTATGCCATGACGGTACTTGTCTATTCACGTGTTGAAATATGACTTTCCATTGACCTTGTAAGATGCTGCTGATCTTCAAAGAAAATGTGTATATGCATGAAACTGTAGAGAGTCCATGGGACTTAGTTTTTTAAAGAGGAACAATGACTAGTATCAGCCATAACTTCAAACACATGATGAATGCAGATTAGATTTGTTTCACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATTGACATGTATAATAATAATCCAAACTGTCCTGTTTGCAGTCGATTTAGGGCAATAAAATGAAACAGATGAAGAAGAAATGTTAATAAATCCTCCATCTTGTTGTTTCCCAAAGGTAGAGTCCACCCAACTGCCTCCCTTCACATATTAGCTGAAGATTGACCCTTGAAGGGTTGATGATCATGTCATGCAATGCTGTCCAAAGATAGCAAACCTTACTATTATGCTTTATTAGAAAACCAATGAAATCTAACATTTTCCACATAGAACATCAAACACTTCCTTATTCAACCCTCTGAATAAGATAGGGGGAATCAGTTATTTTCAGACAGATACACATTCTATTCTACCAGCTGGCTTGTCTTCCACAACTCACATATCTGTATTCCAGAATCCTGACAGGTTGAGTTAGTTGGAAGGAGGACTGAGGGGCCCCAATCATCATGCCAGAGGAGATAATGGCATTGGGAAGGCTTTTTTCCCAGGTGGATTAGCCAGGCTATAATAATAGCAATGCAGTAATTATAAAACAGTGTCGACAGCAATTGCTCTCCCGATTACCCTGCCAGAGCTTTGCTGCAAGCCATTAAAGCCCTGTAAAAGGGAAAAGTTGGGAATCAAGAGATTGGCAGATTTATCTGTAAGACAGTGTTTTCCTTATAATGTACACTAAGAGAGCTTTGGAAAGGTTTATGTAGCCTGGTTTAACAGTGAAAGGGGAATATGCACTGAAAAGACCTTAGAAGTTAAAGGAAAATGGGAATGTTTTCCAAAACCTCCCACAATATATAGGAAACAGTCATTGCACAAGAAATTTAAAACAACACTTCCCATAACAGAAAATTGCCACTTGGTTGGAAGGCTGAAAACAACCGGTGTTAGTCAGTGTGATACAGACTGCTTTCCATTTAGGACATCTGTCATGATAGGGATTTTGTGTTACAGTCACAGTTGCTTCCAAAATGAATCTGTTTGGCAGATTGCTCTATGTTGAATCCATGTGTTTTTTAGGATTAGAGGTTTGAAATTATGGGGTGTCTATCGGCAAGATAATGATATCTATGAAAAACATGTCATTATAATTAATGTGTCAATAAAATTGATGTTCTTCCATCAATTGACAAGAGAAGGCTTTATACAAAATCCTTCATTCATGTAAATCTCTTCATGACACATGATGTTATTgttgtaaaataataatacaccatcctctccctccctaactggttttgatgagatgtgtggttTAGTGGTGTGTGAGATGGTTCGACTGGGATTGGTAGAGGCTGTGGCGTGTGGGAGGATAACAGGTGTTTGCAGACAGACTGCAGATAGGGAGAGTAATTGAGTTGGTGAGCGACCTCCAAGGGGAAGGTCGAGCACCAGCAGACAAATGCACTGTCAGCTATTTGCATATTCTAAATGGATGACACAATCACAGTAATGGTGAGTTctcctttaaaaacctgtttgGGAATAAATGGATTCTGCCTGCTTTCGTTCCATCCTTCTCTTATGTTTTACCACTACCACTTCCCCATACAATGACTCCAGCCTCTATATTAACCTCTTTCAATCTAAATATGTAGTCTTGGTTCATGATAGGCTTGGTGAACATACTGGACTCATTGtgaaaaaaaaatccctgtcttcaAAACAACTCGTGGAATATTTGTGTAGCCTACAGGTATTTTGAGTTCAGAAGGAACTGGGTGTTTTTTCCTAAAATTATTTTGTAGCTTATCCTCCTACTTGATGGAGGGATCCATGTTTGTTCTGAGCAACATGACAACCAAACTGTACTGTATGTCCAATACAGATATGGATTTGATTGCAAAATCAAACTTATAGGCTGAGTTtaaacaggcagcccaattctgatatttttttcaatAGCTCTGAAAAAGAGCTGATGTGAAAATATCtgttgtgattggtcaaaagaccaattagtggaagaaatatcagaattgggctgcctgtgtaaacgcagtcaTATTGTCCCAAAATGAATATAAACACTAAATGCAGAAAAGTAAGTGAAAATTTGTTCTGAAACGGTTGTTCTGAGTTTGAGAAGGGAAAACATTGTTCCTCTTTGACGATTTTgtaaatatatttgtatatactgtatatcacagCAATAATATGACAATGCATGTGGACATTTACTTGTTTGCTCTCTTTGCTTATGTTGTCTTCTGTAAAGAAGACAAATACAGGTACCAACTACAGTGTGAGTTGGAATGTGAATCAGGAAAAGTCCTAATTAAAAGCTATCTGTCATAGGTTACTAACAACACTCCACTGCTCTGTGCACTCTGACTGGGAGATTTGTCCATGTTCTTATTCTTTAATATTTATTAAAATGTTATTGATGTGCCCGGCTTGGCTGCGCAATGATGAAAAGTGCCAAAAAGTATGATTTCCATAACAaaagccttcaacatattctggGTCGCTTGAAACCTTCCATATGTTCCTCAAAACAATGATTCAGTTTTACCACTTTATTTCAAACTCTCTTTTTTTTGTCTTTACTATTTTCAGCGAAGTGTGAAGAAATTTAAGCCATGATTTCTGAGGGGTGTTTTGGCTGATTTTATTCTGCTACAATTAATAATGATGATAACAATAATGGTGATAAAGATAATAAAAACAATAGCACAAGT
>TU938006
CAGCAATAATAACTTCACTGGTACAGCAATAATAACTTCACTGGTACAGCAATTGACATGTATAATAATAATCCAAACTGTCCTGTTTGCAGTCGATTTAGGGCAATAAAATGAAACAGATGAAGAAGAAATGTTAATAAATCCTCCATCTTGTTGTTTCCCAAAGGTAGAGTCCACCCAACTGCCTCCCTTCACATATTAGCTGAAGATTGACCCTTGAAGGGTTGATGATCATGTCATGCAATGCTGTCCAAAGATAGCAAACCTTACTATTATGCTTTATTAGAAAACCAATGAAATCTAACATTTTCCACATAGAACATCAAACACTTCCTTATTCAACCCTCGTAAATCTCTTCATGACACATGATGTTATTgttgtaaaataataatacaccatcctctccctccctaactggttttgatgagatgtgtggttTAGTGGTGTTTGCAGACAGACTGCAGATAGGGAGAGTAATTGAGTTGGTGAGCGACCTCCAAGGGGAAGGTCGAGCACCAGCAGACAAATGCACTGTCAGCTATTTGCATATTCTAAATGGATGACACAATCACAGTAATGGTGAGTTctcctttaaaaacctgtttgGGAATAAATGGATTCTGCCTGCTTTCGTTCCATCCTTCTCTTATGTTTTACCACTACCACTTCCCCATACAATGACTCCAGCCTCTATATTAACCTCTTTCAATCTAAATATGTAGTCTTGGTTCATGATAGGCTTGGTGAACATACTGGACTCATTGtgaaaaaaaaatccctgtcttcaAAACAACTCGTGGAATATTTGTGTAGCCTACAGGTATTTTGAGTTCAGAAGGAACTGGGTGTTTTTTCCTAAAATTATTTTGTAGCTTATCCTCCTACTTGATGGAGGGATCCATGTTTGTTCTGAGCAACATGACAACCAAACTGTACTGTATGTCCAATACAGATATGGATTTGATTGCAAAATCAAACTTATAGGCTGAGTTtaaacaggcagccc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616518.2 False 5966 mRNA 0.41 2 59428518 59437957
TU938006 True 1007 lncRNA 0.38 3 59435235 59437158

Neighbor

gene id symbol gene type direction distance location
LOC110532531 LOC106572482 coding upstream 34649 59386864 ~ 59393869 (+)
LOC110532530 LOC106572481 coding upstream 46109 59374974 ~ 59382411 (+)
LOC110532529 LOC106572479 coding upstream 92362 59323575 ~ 59336156 (+)
LOC110531223 LOC106567210 coding upstream 237622 59188485 ~ 59190896 (+)
LOC110532519 NA coding upstream 242917 59183047 ~ 59185601 (+)
LOC110532533 NA coding downstream 26280 59464237 ~ 59468766 (+)
LOC110532534 LOC106572504 coding downstream 40270 59478227 ~ 59480332 (+)
LOC118966188 LOC106572505 coding downstream 50086 59488041 ~ 59492053 (+)
LOC110532535 LOC106572485 coding downstream 68346 59506303 ~ 59520371 (+)
LOC110532537 LOC106572506 coding downstream 93399 59531356 ~ 59535832 (+)
G824934 NA non-coding upstream 15291 59412952 ~ 59413227 (+)
G824921 NA non-coding upstream 45116 59383098 ~ 59383402 (+)
G824858 NA non-coding upstream 126341 59301881 ~ 59302177 (+)
G824822 LOC106572477 non-coding upstream 128569 59237340 ~ 59299949 (+)
G824800 LOC106572475 non-coding upstream 163733 59263049 ~ 59264785 (+)
G824967 NA non-coding downstream 22393 59460350 ~ 59460837 (+)
G825460 NA non-coding downstream 89289 59527246 ~ 59527490 (+)
G824936 NA other upstream 13505 59414147 ~ 59415013 (+)
LOC118966079 NA other upstream 268322 59158581 ~ 59161748 (+)
ppdpfa LOC106572462 other upstream 400375 59025174 ~ 59028152 (+)
fkb1a fkb1a other upstream 571819 58854845 ~ 58856718 (+)
G825484 NA other downstream 160072 59598029 ~ 59598970 (+)
G825749 NA other downstream 572052 60010009 ~ 60010425 (+)
G826505 NA other downstream 1008073 60446030 ~ 60446534 (+)
G826653 NA other downstream 1125123 60563080 ~ 60563397 (+)
G826751 NA other downstream 1223412 60661369 ~ 60661906 (+)

Expression


Co-expression Network