LOC110532538 (LOC106572486)


Basic Information

Item Value
gene id LOC110532538
gene name LOC106572486
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59553907 ~ 59558082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616523.2
TCTTGCACTGATGCTGTCAGCCGTCCAGTGTCCACAGATGAGAGGAACGCACGCATGAGTAGGATGTCCTCAACACAgcaaagacagagggaacagatATAACTCCTCCACCTAGAATACCATCAGTAGCGGTCTTATTTCTTCTCATCACAGATTGTAATTCTGACAAGGATAAGCCTCATGTCCGGTGCAGGGCAGGAAATGGTCTGATTCAAACACATCTCACAGGAGCTTCCTGTTTCCTCAGCACTTACATTCTAACAACATGAAGTATTCGTCACATTCTTTCATTGAATTAATGAAGCAAAGTCCTGTCCCAATGGAATACTGACAATATACTGGCTTAGTGTTGACTGTTGACGTATGCTCCCAAATGAGATTAAACCAGGAAAACAACACGGTTACACGGATGGCCTTAATTGCTAAATAAAAGCACAGTAATTATCCAGACCTGTTGAACGGCTGCTCCAAGATGGCAGACCCCAGCTCACTCTTGGTCACTGATGGGGCAGTGCTGAGCCAGGCTGAAGTTGATCAATATATCCTCTCTGGCTTGGCTGAAGTGGATGCATGTGAGTTGGGGTTCACAAGGAAGTATGACCTCATCCCATCCATCGTCTGCTCAGTATGCCTTTTGTTAGGCCTAATCTACTGCTTTTTTGGATACCGCTGCTTTAAGATGGTCATGTTCCTGTCAGGCTTCATGTTTGGATCTGCGCTAGTCTGCCTGTTGTACCTTAAGGAGCCTGTGCTGGATACCCAGTTGACTATGGAGACCAAAGCAGGTATCCTCCTGGGAGTGTCTGTACTCTGTGCCCTGGTAACTATGCTGGTACAGACTGTGGGGCTCATCATTACTGGCCTAGAGCTGGGGTTTCTGCTTACCCTTGCCAACCTACTGGTTGTCAGACAGTTTTACAGCCTTACCCCACTATGGGCGCCTCTCGGTGCACTCCTAGCCATGAGCACCTTTTGTGCCACTCTCACACTGCAGTGGCAGAAACTATTCACTGTGCTCGCCACGGCTGCAGTCGGAGCCGCTGTGGTGATGGCATGCGTGGACTACTTTGTAGAGACGTCTCTGCTGGCTGGCCATGCGTACGACATCCTGTCTCAGGTTCCCCCTCGGCCCCTCTGCTGGTACAGCTGGGTTATAACAGGCGTGTTTCCTCTATTTAGTCTGATGGGGGTAATGGTGCAATGGATGCTCACTGCCAAAGGACTGTCACACACAGAAGTACCTGTCAGTGGACGACAAAGACAGGTCCAACTGATGCGAATCAGACAGAGAGATGCCCAGAGACGACCCCAGCTGGGCACTTACCGCCATCGCAAGCCTCCAATTCTAAAGCGTTATGCTGGAGACGTCCTGGCCCCAAGTTACATCCAGAGCCTTCGTGACCGCCAGATGGGTACAGGCTCCTCTAGCAGCAGCATCATCAGCAACAGCACAGTCAACCACACCATGATAGACTTCGACTTTGAGACAGGCTTCATGGTTCCCCTGAATGCCTCCTCCCTAGTCTACAGGGTCTGAGGGACACCAAATAGTAGGCATCACCTCCCAGTTCCACTAAGACGCCCAACACCTCTCTCCAGCAGACAATTCATACACTGTTGTAAAAAGAAAAACAGACTGATTCTTGAGACAAGAGATTCAGCCAACTAATTCAccttgttgttttgtttattatTCTGTCTTTCTAAAGGTATCTGACAGTCAATCGTAATATAACCATCGATCATTcctcaaataaataaaattgcTTTATTTTGGTCA

Function

NR:

description
transmembrane protein 198-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616523.2 True 1780 mRNA 0.48 5 59553907 59558082

Neighbor

gene id symbol gene type direction distance location
LOC110532537 LOC106572506 coding upstream 18075 59531356 ~ 59535832 (+)
LOC110532535 LOC106572485 coding upstream 33536 59506303 ~ 59520371 (+)
LOC118966188 LOC106572505 coding upstream 61907 59488041 ~ 59492053 (+)
LOC110532534 LOC106572504 coding upstream 73575 59478227 ~ 59480332 (+)
LOC110532533 NA coding upstream 85141 59464237 ~ 59468766 (+)
LOC110532540 LOC106572487 coding downstream 22982 59581064 ~ 59595956 (+)
LOC110532541 spats2 coding downstream 44864 59602946 ~ 59635003 (+)
LOC110532542 ormdl2 coding downstream 141989 59700071 ~ 59703279 (+)
LOC110532545 cd63 coding downstream 156246 59714328 ~ 59734425 (+)
zgc:56699 LOC106572533 coding downstream 194390 59752472 ~ 59758243 (+)
G825467 NA non-coding upstream 16512 59536779 ~ 59537395 (+)
G825466 NA non-coding upstream 23278 59530199 ~ 59530629 (+)
G825460 NA non-coding upstream 26417 59527246 ~ 59527490 (+)
G825506 NA non-coding downstream 83013 59641095 ~ 59641409 (+)
G825513 NA non-coding downstream 98496 59656578 ~ 59656791 (+)
G825526 NA non-coding downstream 117613 59675695 ~ 59676002 (+)
G825545 LOC106572491 non-coding downstream 151170 59709252 ~ 59709788 (+)
G824936 NA other upstream 138894 59414147 ~ 59415013 (+)
LOC110532530 LOC106572481 other upstream 171496 59374974 ~ 59382411 (+)
LOC118966079 NA other upstream 393711 59158581 ~ 59161748 (+)
ppdpfa LOC106572462 other upstream 525764 59025174 ~ 59028152 (+)
fkb1a fkb1a other upstream 697208 58854845 ~ 58856718 (+)
G825484 NA other downstream 39947 59598029 ~ 59598970 (+)
G825749 NA other downstream 451927 60010009 ~ 60010425 (+)
G826505 NA other downstream 887948 60446030 ~ 60446534 (+)
G826653 NA other downstream 1004998 60563080 ~ 60563397 (+)
G826751 NA other downstream 1103287 60661369 ~ 60661906 (+)

Expression


Co-expression Network