XLOC_026749 (trim35-12)


Basic Information

Item Value
gene id XLOC_026749
gene name trim35-12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49103210 ~ 49110710 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052071
GGTTAATACAGTCCAGCATTTTATTCTGAAGTGTGATGTAAATGTTTACTAATACCCTACTAATCTCTGTTGACATGTTCTCACTTTCATAATCAACAGAATGCCTAAAGGATACCGTCAAAACAAAAGTGTAACACCATAAAATGTCCCCACATCAGTAGGAAAGTACTGAAACACAAGCGTCATTGAGTTCCCAAAACAATAATGCTTACACCAAACATTTCACGGATCAATGGCAGAGGTTGTTTTAGCCTCAAGCAACAGTTGATCCAGTAGTGAACCAAgaccaaatatataaaaaaacaaaacaaagtggaCAAGGTGTGGTTAAAACCTGACTTCTCAGAATTTGATGATGGTAGTCTTAAGTCACGGCTCTATAAAAGGTAATTATTGGCAGAGGACAGCCTTGTTCTTGGGAAGTGTAGGTGCTTGTAGGAGGTTTGTGACTTAGTGTAGCAACAAATACTGTAGGTGCAGCTTTGGCTCATCAGGTTTCTGTATTAGAAGCGAGCAGACTATTCCAGCGACACAGCCATGCCCTTACGACCAAGGGCGTCTTCTCAACCTGGAAGAGCAAACACTCTTCCGAGCTTCAAACCCTTCCCAATCCTGCGGCCAAGAGCTTCGTCTTCTCACACCAAATCGCCATTGGAGGATGAGCTGTCTTGTCCGATTTGCTGTGAGATTTTTACTGACCCTGTTGTCCTGAAGTGCAGCCACAGTTTCTGTCGCCTTTGCCTTCACCTCTTCTGGAACAAGAAATCACCTAAGAGGGAATGTCCGGTGTGCAGAAGGAAGTGTATGCCGTCTGAGCCCACTGTGAGTTTGGCTCTAAAGAATGTGTGCGATGCCGTCTTACAGGAGCAAAAAGTATCTGTTGGAGTGCCAAGCATAGGTTCATCCAACGGGACGTCCAAACCAGAGGCACTTTGTGCCACTCACGGGGAGGGACTCAAGTTGTTCTGCCAATCTGATGAAGAGGTTCTCTGCTGTGTTTGTCAGACATCCAAGAAACACCAAGGCCACAGTGTGTGTCCTTTGGAAGAGGCGGCAAACGATCTCAAGGAGGAAATGCGGCAGATTGTAATTCCACTGAAGAAAAGTCTAAGACGCCTGTATGAGGCCAAACAAGAATGTGATGACATAACTGTCCACATAAAGAACCAAAGGCAACAGACAGAGAAACAAATTCACGAGGAGTTTGAAGAGCTACGACAGTTTCTTCTAAAGGAGGAATCTGCAAGAATTGCTCTTCTGGCAGAAGAAGAAGAGACAAAGAAACAGGCCATTAAGAAAACAACAGACTCAATCACTTATGATATAAGCACATTTTCTCAAGCTGTTGTGGCCATAGAAAATGAGATTGCTAATGATGACAGCCTCTTTTTACAGAACTACAAGAATGTCAAAACAAGAGCTCAGATAACATTCCACGAACCAGAAAAAGTCCCCAATTCTCTAATCAGCGTTGCGGAGCACATCTCCTCCCTGAAGTTCAGAGTGTGGGAAAAAATGCAGAATCTGGTGGAATGCACCTACCCCTGTTTGTCTCTCAGCAAGGACCTGACAAGTGTGTCCAACACAGGGACAATGCAAAAGTTGCCAGATAACCCTGAGCGCTTTGACCATCTTGTATTTGTACTGGGCTCCAAGGGTTTCTCCTCTGGATGTCATTCCTGGGAGGTGGAGGTGGGCAAAAATAATGACTGGGTAATCGGTGTGGTGAAAGCATCGGTAGCAAGAAAAGGCAAGATATCAGGCTGTCCAGAAGGAGGATTCTGGACTATCGCTCTCTCAGATGGGCAGTACACAGCCATGACCACTCCACGAACACAGCTCAAGCTGAATAGCCATCTAGAAAGGGTTCGGGTAAAGATTGACTATGATGCTGGAGAGGTCAGCTTCTTTGACTCAGTTGATGTTGCACCTCTCTACACATTTACTGACCATTTTACTGAGATGATGTTCCCATTTTTCTGTCCGGGAGCGAATATAAATAGAAACAATCCAGGGCCATTGAAGATCTGCCCAGTGAGAGTGGCTGTGTGGAACAGTGGCTCCTGGTGA

Function

symbol description
trim35-12 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110920-4 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).

Ensembl:

ensembl_id ENSDARG00000101264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052071 True 2070 mRNA 0.45 6 49103210 49110710

Neighbor

gene id symbol gene type direction distance location
XLOC_026748 BX784040.1 coding downstream 25331 49077762 ~ 49077879 (-)
XLOC_026747 NA coding downstream 66428 49023900 ~ 49036782 (-)
XLOC_026746 BX769173.2 coding downstream 88007 49010987 ~ 49015203 (-)
XLOC_026745 NA coding downstream 101917 48999903 ~ 49001293 (-)
XLOC_026744 BX769173.1 coding downstream 109630 48986671 ~ 48993580 (-)
XLOC_026750 gipc1 coding upstream 15393 49126103 ~ 49138004 (-)
XLOC_026751 dnajb1a coding upstream 40112 49150822 ~ 49163683 (-)
XLOC_026752 NA coding upstream 75688 49186398 ~ 49372676 (-)
XLOC_026753 si:ch73-167f10.1 coding upstream 269064 49379774 ~ 49382896 (-)
XLOC_026754 NA coding upstream 295448 49406158 ~ 49418345 (-)
XLOC_026739 NA non-coding downstream 629456 48461497 ~ 48473754 (-)
XLOC_026738 NA non-coding downstream 775077 48323540 ~ 48328133 (-)
XLOC_026761 NA non-coding upstream 823926 49934636 ~ 49937735 (-)
XLOC_026769 NA non-coding upstream 1228070 50338780 ~ 50341046 (-)
XLOC_026770 NA non-coding upstream 1322841 50433551 ~ 50438278 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location