LOC110532566 (LOC106572511)


Basic Information

Item Value
gene id LOC110532566
gene name LOC106572511
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 60144449 ~ 60228459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988561.1
ATCCTTTCAATTAGGACAGAGGAGCGAGCGTAGTGAGGGAGAGCGAGTCGAGGGAAGAAGCTGACTGAGCATTTAGGAGAGATACAGCGAGTTTGAGTTTCAAGGCATGCAGTTTAGAGAAATAGAACAACCTCTCCACAAGCTCTACTGATCTAAAAACATAAGAGCAACGCAGGTGTTGattaaaacaaatacaattttagtGGATTAATTGAGAAATAGAATGGGTTCCAAAAGATACCATTCGAAGACACCGGGAAAACTGAACTACTCATTATTCTGCATTGGGGTTTGTCTAATAATTCTGCTACCGTTGTGTGATACATTCAACTTGGACGTGGAGAACCCTTCTGTCTACAGCGGACCTAATGGGAGCTACTTTGGATATTCCGTGGAATTTTACTTGACCAATTCTTCAAGCGTCAGTGTAGTGATTGGCGCTCCCAAGGCCAATACCAGTCAGTTCAACATCACAGAGGGCGGGTCTGTGTACTTCTGCCCATGGAGTCTCGGCCAATCTGAGTGCCACAGCATTGAATTTGacaatcaagGGGACCGCATAGTCACTGTCAGTGGCACAGACTACCAGGCTGAAGTCAAGTCCCACCAGTGGTTCGGCGCCACCATCCGTTCCCACGGAGACACCATTCTGGCCTGTGCCCCCCTCTACTCCTGGAGAACCAAAGCAGAAAAGCCCCAGTCAGATACCACGGGAACCTGCTACCTCTCTGTCAAGAACTTCACCAAGTTTGTGGAATATGCTCCCTGTCGCACAGAATTCATTAACCAGGGTGGTCAGGGCTACTGTCAGGGGGGATTCAGTGCTGATTTCACGAAGGATGGGAAAGTGGTGCTTGGAGGACCAGGCAGCTTCTTCTGGCAAGGTCAGGTGATCTCAGCAGCCAAAGAGGAGATAATCAAGGCCTACTATCCAGGGTACTTCATGCAGTCTGTGGAGggacagacccagaccagacaggCTCAGATCAAATATGACGACAGCTACCACGGTTACTCTGTTGCAGTTGGGGAATTCAGTGGAGATGACGTGGAAGATGTTGTGGCTGGGGTCCCAAAAGGGGTCATGCTCTATGGTTTGGTGTCTGTTTTAAATGGCACTGATCTGAAGTCCATGCTCAACTACACTGGCGAACAGATGGGCTCCTATTTTGGGTATACTGTGTCCACAGCCGACATCAATAACGACGGcatGTCTGACCTGTTGGTGGGAGCTCCCATGTACATGACCCGAGGGTCAGACGGCCGTCTGGAGGAGGTGGGTCGTGTGTACCTCTATCTGCAGCGTGGACCACTGGACCTGGAGCCAACTCTCAACCTGACCGGGACCCAGGTGTTTGGGAGGTTTGGCAGCACCATCGCACCTCTGGGAGACCTCAACCTGGACGGATACAATGACTTGGCCATCAGCTGTCCTTTCGGTGGAGAGGACCAGCAGGGATTGGTTCTCATCTACAACGGATTCGCCGGTGGGCTCAGGAACACACCCTCTCAGGTCATAGCTGGCCAATGGGCTTCAGGCACAGTGCCGGCCAGCTTTGGATTCTCACTCCGAGGTGCTAAGGATCAGGACATGAATGGCTACCCAGATCTTATTGTTGGTGCTTTCGGAGTTGACAAGGCGATTTTGTACAGGTCCCGGCCCATCGTCAACACCAGTGCCTCCCTGACCGTCTATCCCACAATGATCAACCCCGAGGAGAAGAGTTGTTCAGTCAACAACGGCAACACCACCATACCTGTCTCCTGTGTCAACCTGAGTTTCTGCCTCTCTGCCAATGGGAAGTACCTACCAGACAACCTAGgcttCCTGGTAGAGGTGCAGTTGGACCATCTGAAACACATGCAGAAGGGAGGGGTGAAGAGGGCTCTGTTTGTAGACTCCCAGCAGCCAATGCTTCAGAGGAGTGTAAGAGTGCGGAGCGGAGAGCGTGTGTGTCACGAGACCAAGATCTACCTGAGGGATGACAAGGAGTTCAGAGATAAGCTCTCCTCCATCTACATCTCCCTCAACTTCAGTTTGGATCCTCAGGCAGCGTTTGACTCCCACGGCCTCAGACCCATCCTTAACTACAAGACCACCGAGCTCATCGAGCAGAagGCCCAGATTCTGCTGGACTGTGGAGAAGACAACATCTGTGTTCCCGACTTAAAGCTGGCGGTGCAGGGGGACAGGAAGGAAGTGTACCTAGGTGATGACAACTTGCTGACCTTGACTTTCAACGCGCGGAACGAGGGTGAAGGTGGGGCCTATGAGGCTGAATTGTATGTGGTGTTACCTCCTGAAGCAGACTACAGCGGTATAGCTCGCAATAACGAGAGCCTGACCCAGCTGACCTGTAGCTACGAGGCTGAGAACCAGACCCGCTACCTCAGCTGTGACCTGGGCAATCCCATGAAGTCTGGCACCAGCCTGTGGGCAGGCCTGCGTTTCACTGTGCCACGACTGAAGGACACACACAAGACGGTTCAGTTTGAGCTGCAGATCCGCAGTAAAAATGAGAATAATTCCCACAGTGAGGTGGTGCCCTACAAACTGGAGGTGGTTGTCCAGGCCAATGTTATTTTACAGGGTGTCTCCCGGCCAGACAAGGTCTTCTTCCCTCCCCTCAACTGGAAGGTCTCCAAGACCCCCCAGGAGGAGCAGGACATTGGGCCTGTAATCCAACACGTCTATGAACTGGTGAACAAAGGTCCCAGTGGGATCAGCCACACAGTGCTGCAGCTCAGCTGTCCTCTCAGTGTTCAGGGCCagggtctcctctaccctctggAGATGTCTACTGAGGGACCCCTCAACTGCACCACCAACCACTCCATCAACTACCTGCAGCTCAAGcTCCAGCAGACTTCCACAGAGCAGCCGCCCCTACTTGTGCCTGGTCAGGATCACCACATCGAGAGGAGAGAAGTCCAGAGAGACCAGCTGGCAGAGCACACTAACCTGTCCTGCTCTAACGTGGAGTGCTGGACACTACAGTGTGACGTGGGTCTTCTGGAGAAGGGGACCAGCGCCATCCTCAAATTGCGCTCCCGCATCTGGGCTGAGACCTTCATCgagAGGGCATACAAGGGGTACGTGCTGGAGTGCCTGGCAAGGTTCAGTGTGGTCAAGATGCCCTATGCCATCTTGCCCAAGGAGGTACCGAGTGGATCTAAAAAGGTGGTGACCCCGTTGGTGTGGAACAAACAAGACAGCCAATACTCTGTGCCCTTGTGGATCATCATTCTGGCCATACTGGCTGGGCTTCTGCTGCTGGCACTGCTCATCTACGTCCTGTACAAACTTGGCTTCTTCAAAAGGTCGCTACCCTACGGCACGGCTATGGAGAAGGCCCAACTCAAGCCCCAGGCTGCGTCTGAGGCCTAAACACCACATAGAAAGGATTAAAACAAACTATTTTGTTGTCACAGAACCAAAGAAACCTAGAAACCCACATGATTGCAATGGAGAAATGTGGTTAATTTAAACATCCAGAGAGGATTAGACTGCAgttgaagagggaggaggaggaggaggaggaaagaccACTGGAACTCCACTGTACTGCACTAGAGGAAGAAATACCCAAAGAACTCCAAACCAAATGAATGTTTTTAATTTAATATATgtttatgtttgttgttgttgggtTGGGGTTGATCACCAAGCTGAACTTCAGTGTCACAGTCAGAAAAACTGGCTTTAGACTTACTGATCCTATTTGAGTTGAAGTCCAAGACTAGTGACTACAGAAGAAGAGGAGTAGCCTATGGAAAGCCTTGATACGATCAAGGAAGAAGCTTGGTTTCTCCCTGCACATCTTTTTAAACAGCTTTGTATTCCCTTGTGGATCCTTGTGAAAGATAATTGTTTTACTCTTTTTCAACTGCCTTCATTTTGGTGCTAAAAAAGTGTGATCACTGCTTTTAAAAGGTATATGATGGTGTTGAGGGGGACTGAATGCATCTCCCTTCCTTTTTGTAGCCATTAAAGAAATCTGATCTGATACTTTCCCAACCGAAGTTAGAAACATGCTTCCTGTTCAGGGCACCAGAAGAGCATGTTCACCAGAGGTGCATGTTCACCAGAGGAGCATGTTCACCAGAGGAGCATGTTCACCAGAGGAGCACAGACAGAGgatgtctgtctcatgtctccaTAATCTACACCTGAGCTGTTTACCCATCCACATTTCTACCAAACATGTTTTTACAGCCAATCTTTTGTTTAATGTAAGTTCAGTTTGGCTCCAGTAATGTTCGGCACGTACAAACTCCTGTACTGCCAAAATAGCTTCTTCAGCCTCAGAATGGTGGACATACAGTGCTTGTTCCAGTTGTTTTGCACTCAAAAGAAATCTACTGATGTCTAACAAGATGCCAAAAACAGACAGGATACTGACGGACTGATCTTCCTTTGGGTTTGACTTGACCATTACTGATCACTTTGTTGATCCTGCATGTTTGTGTTCGTTGTGACAGATCAAAGCATTGCCTCAAAGTTGACTGGGACTTGACTGGATCCATCCACCATGGGCCTGTGAGATAGATCCTACTGAAAGCTTGATACACTCTGGTGCCAGTACTCTGTCTGGTGACTTGTAAACAAGTTTGTCCAGACTTTGCTTGTGCTGCAAGAGGCAGTATGGAAATTGAGTTGAAGCAAAGACCATCCAGGTGTATCCACAGccttggtgtgtaatgatgtcttGAAGTCAGTACATTACTATGTTGCCAACAGAGATCAAGGAAGCTGTAGTACATACAATCTGGGTGGGTTGCTTGCAGGTAAGGGCTCACTCCGGTGAGTGTCAGGGAAACGGCCAAATATCCAGTCCCTACACATTTCACCTTGATCTTGTAGTGTGCTAGGAGCATCTTTGCTCTGGtttgttttaattttattttgaTGTCCTTATGATAACAAAAACTGACTGAGTACCAGAAGCTCTCACACCACGATGCTGCAGCTTCATCCATGGACTGAATATGTGGGGCTCTTTTATTTGTCATGTAAAtacgttttgtgtgtgtgtcagactgccTGTGTCTTCATGTGTTGATGTTCctgtctgtttttttgtgtgaatcGGAGATCAATCCCAATGCTAagtcctctcttttctctcttgcaTCACGAGGGAAAGGTAGACTTGTCCAGCAGTAATGCTGATCATCGCATCACTTCAATCTGTACTCAGGATGGGTTGAGACTGCCTGATTAGAGTTTAGGACAGCTAGGACCAGAGTAGCTATTCATTTAGGGCCCAATTCAGACTTGAGATAAAGGGATAGCAACTgggcattggggggggggggggggggggggggtatggttTGTACGTGCAATATTATTATTCACTCTGGTTGATATTGGTTTTAGTTTTTGCAGTAGTTTTTGGATTTTCTTTCATTTTGTTCCGGAGGGGTTGTGTTAAACCAGGTGTGTCTAACATCTAATGATGAGTCTGTGTTAAAAACCATACCAAGTCTGCTCCCTATGGTCGGATGGGGGTATTGTCAAAAACAATTGGTCTGTTTTTTCCCCCCCTAGATTTTTCCACTGCACGTATTCACCACTTTTACATTTTGCTCCACTGCTATAACTAACCAATGTTTAGTATCACTATTTCAGATATCAGTGGTAAAAaaatacatccatccatccacctcctGAGTTGAACTCGAGTGGGCATGTGTGATAATGTATGTTCAGTTCAATTGTATCACCTATCCAAACGCAGCCATAATGCTACACATCTGTTTTCACTATTTGTTTTGAATGCCCCCTAGCTCATATTGGTGATTTAATCCACAAGCTTTATCAACACTCATGGTGCAAAGACTGCTAACGCCACTCAGTGGATTCATTTAACATGTATCATATTATTTTTAACAGTATTTGTATGATATTGTTTTGAAAAGTATATGTCTGATCGTAGTGTCCAGACTGAAAATGTCAACCTAGTATTATTTATATTGAAAGAGGATGTTTTAAACAGAATCCTCTGTGGTTACAGTAGAAGACTACACTGGGTTTATCCTTGTTTTCTCAATGCTTTCTTGGCCCCCCTTTTAAAAATCTCCTTTTTTACAAAGTTGTAAATATTTCTGACGAGAATATTTTTTAGATCCAattgggaaaaaaaacatttgtgaaATTTACTCTCCCCATATTGGGGAGACTTTCTGGGAAGAGGATTTAGTCTTTTAGTGATCATTTGTGTCTTATTATATGgtttgcatttcaattaaaaaaatGACATGCTTTGATTGAA

Function

NR:

description
integrin alpha-5-like

GO: NA

KEGG:

id description
K06484 ITGA5, CD49e; integrin alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988561.1 True 6278 mRNA 0.47 30 60144449 60228459

Neighbor

gene id symbol gene type direction distance location
LOC110532564 LOC106572515 coding upstream 56447 60079288 ~ 60088002 (+)
LOC110532563 LOC106572516 coding upstream 66543 60065296 ~ 60077906 (+)
LOC110532560 LOC106572517 coding upstream 96994 60038922 ~ 60047455 (+)
LOC110532558 LOC106572521 coding upstream 135952 60000738 ~ 60008497 (+)
LOC110532559 racgap1 coding upstream 146006 59989661 ~ 59998443 (+)
LOC110532568 LOC106572510 coding downstream 53322 60281781 ~ 60286078 (+)
LOC110531228 LOC106572534 coding downstream 60232 60288691 ~ 60304205 (+)
LOC110531229 LOC106572568 coding downstream 408064 60636523 ~ 61072400 (+)
LOC110532569 LOC106572541 coding downstream 875308 61103767 ~ 61156703 (+)
ptpn22 LOC106572545 coding downstream 1103645 61332104 ~ 61362738 (+)
G825802 NA non-coding upstream 26357 60117754 ~ 60118092 (+)
G825801 LOC100194703 non-coding upstream 27021 60117139 ~ 60117428 (+)
G825790 NA non-coding upstream 44179 60100000 ~ 60100270 (+)
G825760 NA non-coding upstream 110833 60033336 ~ 60033616 (+)
G825647 LOC106572518 non-coding upstream 113944 60014563 ~ 60030505 (+)
G825775 NA non-coding downstream 1853 60230312 ~ 60231902 (+)
G825866 NA non-coding downstream 22850 60251309 ~ 60251680 (+)
G826319 NA non-coding downstream 51922 60280381 ~ 60286964 (+)
G826327 NA non-coding downstream 68822 60297281 ~ 60351580 (+)
G825749 NA other upstream 134024 60010009 ~ 60010425 (+)
G825484 NA other upstream 545479 59598029 ~ 59598970 (+)
G824936 NA other upstream 729436 59414147 ~ 59415013 (+)
LOC110532530 LOC106572481 other upstream 762038 59374974 ~ 59382411 (+)
LOC118966079 NA other upstream 984253 59158581 ~ 59161748 (+)
G826505 NA other downstream 217571 60446030 ~ 60446534 (+)
G826653 NA other downstream 334621 60563080 ~ 60563397 (+)
G826751 NA other downstream 432910 60661369 ~ 60661906 (+)
G827039 NA other downstream 984002 61212461 ~ 61251238 (+)
G828274 NA other downstream 1960723 62189182 ~ 62190606 (+)

Expression


Co-expression Network