LOC110532568 (LOC106572510)


Basic Information

Item Value
gene id LOC110532568
gene name LOC106572510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 60281781 ~ 60286078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616575.2
ACTCCCCTCTTGGCTGAAGACGGAAAACTGTAGCGTTGGTTcttgaacataaaacacaatctTGATCATTCTTGGGCGGGTGGGATAAACAGTCGTTATTTTGTTGACACTGTAAGCTGCTTTTtaataacttaaaaaaaaaatcggtTGTTGGTGTTTGATACAATTGTAGGGAGTATTGTTTTCGTTCGATAATCAATTTGTTTGTATCGATCAGCGATGGTTCATCCGGGGTTGTTGAAATCATCGGTCGATCTGTAAACAAAAACTGTCAGGCTAACACGGTACATGGCATGTGTATGCCTTTTTATTGGCCGTCTACATAAGTTTGTTTTCAACCTATAGCTATTGTCATATCCGTGTTAATGGGGAAGAGTAGAACATACGTACGTATAGGATATGCTACCTTTGGTATGCTGGTTGGATTTTCAGCTTTTTTGGTCTGGAACATAACATACAAACAGCCATGGACAGCGGCAATGGGCGGATTGTCAGGAGTGCTGGCGCTCTGGGCCCTTGTCACCCACGTCATGTACTTGCAGGACTTCTGGCACACATGGCTGAAGGGACTCAAGTTCTTCATCTTCGTTGGGGCTCTCTTCTCCATACTGGCTGTGGTTGCCTTCACTACCTTCCTCACCCTTGCCATCACACAGAAGCAATCTCCGACTGACCCTGGGAGCCTGTACCTGTCGTGTGTTTGGAGCTTCCTGACTCTCAAATGGGCATTCCTCTTGGCCCTGTACTCACACAGATACCGCCAGGAGTTTGCTGACATCAGCATCCTCAGTGACTTCTGATTATACACTCCATGTTACCCTTCATACACTTGGTAGAAGATTTTGGGAAAAGGGTTTTGGGAACCAACCGGTGGCAGAAGAGTTGGTGAAAAATAGTTTTGACAAAGAAGCTGGAGCACTGAGAAGCACTGAGGACTGAAAAGCTGGAGTTGCTGGATAAGACTTCTTTTAACTTTTATTCATTATAGTTACACACTCCGGACATGCTTTAATTTGTCCTCAAACCCCCGCTactacacatacagtaacagCTCAGCCATTTTATTGGAGTGAGTAGCCATATTCACTTGGGAAAACTCATTTTGAGGGGAACTAGGCTACTGCTTATCTGTAATGGTAGACAGCAGAGGCTTGTGATTTCTAAGGAAAGATTTACTCAAGCCTATTTTTACAGCGGCTTAATTAGTTGATCATGACTGGAACATCTAGTCTGTGGAAGGTCTCTGAGGGTTTGGGTTGAAGCTTTCCGAAAGGCCACCATTTTTAAGTACTGTATTTGAAGCTCCAGATTGAAATGTATTGATGCAATGTCGCATCTAATGAGTAAGTGTCCAAATACGCCCATAGAAGAAATGCTGTGTCACTGTTGTTTATGTGATTTCTCTACTGTTTCTCCTTTCGCCACTTGGGGGAGCAGGATTATTTGCCCAGTCATTGCTATCTGTCTGGATAATGGATTGTCATATGCTTTTTAACATGTGTTATTCTCTTTTAGGAAACAACACACCAATACATGTTTGATGCACTTTACATTATGTTATTGATTCAATTGCGCTCCGCTGCCATCTGTTTTTAAAGATCACTTTTAATATAGGCTGAGGATGGATATGATGCAAACTAATACACTGGGGTATGGAACTCCTGATGAACTGACGGGGCTACCTTTTCGCTACGTTTCTATCTCCATATGTTGTCTTATATTCACGTTGCTTTGTTTTATCATATTAAAGATCTAATGTATTTACCTGTATGCTACGGAGTTGCTTTGACTATATATAACGCATTCATTACACATCTATAATCACTTCATTAACATGTTATAACAGGTCCCAACTGCATTTTTAAAGGTTATTGAAATATAGTCATAGCAGATCTGTAGCTCATTCATGTCATTCCATGCAAGAGCTCATATTTACCTTTAATAGAGGCATCATTACAAATACAGTGTACTGTCATCATTATACTGTGCTCAAAAGTGAGCTTCTCCCATACTAGTGTTAGTGAATATGCCAATGGACCAAACTATGTTTTGAAAATTATGTTGATTCATAGCCCAACAGACCTATAATGTTGGTGTTAGATCAGTGGCAAACTGCATATTAAATTACCAGGAAGTGCTTATTGTGAATGGGAAAATAGAAATGACTTCATATTGACAGCATATAATTCATATATAGACCCTTTGTGTGTGTTATAAACCGGTATGACCAACTTAATTGTGATTTGGAGGGCTGTTAATGAGATACGATCTGTGAAGTTTATCCTGAGGATTCAACCCTGTGGGGATCTTGGTGCACCACTGACCTCCGTGAGAATAAGGTCACTGGCAGATGGGGGAAATGGGGCTGGTAAAAGCAATATAACAGCATCATCAacaggaatcatgtagtaac

Function

NR:

description
heme transporter hrg1-B-like

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616575.2 True 2413 mRNA 0.41 3 60281781 60286078

Neighbor

gene id symbol gene type direction distance location
LOC110532566 LOC106572511 coding upstream 53322 60144449 ~ 60228459 (+)
LOC110532564 LOC106572515 coding upstream 193779 60079288 ~ 60088002 (+)
LOC110532563 LOC106572516 coding upstream 203875 60065296 ~ 60077906 (+)
LOC110532560 LOC106572517 coding upstream 234326 60038922 ~ 60047455 (+)
LOC110532558 LOC106572521 coding upstream 273284 60000738 ~ 60008497 (+)
LOC110531228 LOC106572534 coding downstream 2613 60288691 ~ 60304205 (+)
LOC110531229 LOC106572568 coding downstream 350445 60636523 ~ 61072400 (+)
LOC110532569 LOC106572541 coding downstream 817689 61103767 ~ 61156703 (+)
ptpn22 LOC106572545 coding downstream 1046026 61332104 ~ 61362738 (+)
si:ch73-206d17.1 LOC106572549 coding downstream 1376175 61662253 ~ 61687521 (+)
G825866 NA non-coding upstream 30101 60251309 ~ 60251680 (+)
G825775 NA non-coding upstream 49879 60230312 ~ 60231902 (+)
G825841 NA non-coding upstream 82209 60199080 ~ 60199572 (+)
G825837 NA non-coding upstream 89594 60191854 ~ 60192187 (+)
G825802 NA non-coding upstream 163689 60117754 ~ 60118092 (+)
G826327 NA non-coding downstream 11203 60297281 ~ 60351580 (+)
G826419 NA non-coding downstream 75754 60361832 ~ 60366876 (+)
G826430 NA non-coding downstream 91192 60377270 ~ 60377500 (+)
G826492 NA non-coding downstream 151846 60437924 ~ 60438183 (+)
G825749 NA other upstream 271356 60010009 ~ 60010425 (+)
G825484 NA other upstream 682811 59598029 ~ 59598970 (+)
G824936 NA other upstream 866768 59414147 ~ 59415013 (+)
LOC110532530 LOC106572481 other upstream 899370 59374974 ~ 59382411 (+)
LOC118966079 NA other upstream 1121585 59158581 ~ 59161748 (+)
G826505 NA other downstream 159952 60446030 ~ 60446534 (+)
G826653 NA other downstream 277002 60563080 ~ 60563397 (+)
G826751 NA other downstream 375291 60661369 ~ 60661906 (+)
G827039 NA other downstream 926383 61212461 ~ 61251238 (+)
G828274 NA other downstream 1903104 62189182 ~ 62190606 (+)

Expression


Co-expression Network