XLOC_026752


Basic Information

Item Value
gene id XLOC_026752
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49186398 ~ 49372676 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053121
GTTTTACCATCGCTCTACCAATGTTTTACTATGGCTTTActatcgttttaccattgttttaccatcgtttaACCATCGTCTTACCATTGTTTTACTATTGTTTTAGCATCATTTTATCATCGTTTTAGTATTgtttttaccattgttttactatTGTTTTACCATCCCAGATAGCAAGCCCACATTGAATCAATGTTGGTTATTGGTTATAATAATCAGTATCAGACGTCGATCAAATTTCGACATTGAATCAATGTTCTTTATTTCGTCGGTATGTCGGAAGGTTAATACATCGAGAATATAACACTGATTTAATGTCGAAATGAAGTTGACTCTTCAACATTTAGGCCACCCGCCGTATTTGGTCGAAATCATAACATTGGTTCGATGCTAAAACTTGATTGGAGGACACTGAGTCGGTTCTTCTGCGCGAGTCAGCGTGGTGCATGCGTGCGCGTGCTCATCATTTGAATCAAGTAACGAACATAAGACAACGGACGGAATGCTTATCTGAAGGTTAGTACTTTATATTCAACGgtttacatgttttatttgttgtttttccaAGAGTTAATGTTAAATTGTAACTTTAGATGTGTAAATTAACACTTTACCTCTTCCTATACATTTTTTATGAGCCTGCAGGTCGCCCTGTACGTGCTCAGGCCATTGGCAGCAGCTAATCTATGAAGGGATGAACTCCTCGCCAGAGACGCTCCATAGCATTGAATGGGAAAAGCTTTGCCATTTCttTCTCTGGAATCTCCAGTTGAAGACATCAAAATCTTTAacctgtgtcagcctggacagacGTCTATTCCAGTTCTTCCTACACCACACTAATCTCTCTGCCTATGTATGGATTCGTGACTATTATGTTCTCTAAAGatattactggagcaaaacaacagcaccctTGACTGAAGTTTCTTTTAGTGGCCAGTATAATTAAAGTCTTagaaagttttattattattatttatttttttggagctgcaaataattttttccctctctcacacaaacacactaaacgACTGCTTGTGCTTATAGTACAGTGACAATATTGACAATATTTTAGccgtttttataattatattacataaatttttaTTGTTACAAAAATCTTAAGTAGTTGTCACAACCCGATGCACACTTGAGTTTAAATGAGAATGAGAATTTCTCAACAGGGgacaacactaaggattttttctaaggATTTTTTATTGGCCTGGTGTGGAATATAAAATTGAAATTAAGATGGAGAGCAGGAAGtagaaaaaaactgaatgggagacataAAGGAAAGTCCATATTTTTTAAATCCATACCATATTACAAAAGAGAAAAAGATAGAAATATAATGAGGAcagttttc
>TCONS_00053122
CTTTCCATTCTCGTTAATGatacaacatatataaataaataaaataacaaaaatgaacaaaaagtgtgtgtgtttctttctctCTCGTCTGTTCTCGTCCCATCTCCATGTCGCCCCGCCCTAATTGGACGTGCTGCGTGCGTGCGCTGTGGTTGGTGCTTGGAGACCGCATCTTTTGAAAAGACGTTTCTGACTCCAAGTCCAAAATGATGTCATTCACATTAAAGGTCCTGAGGTTTGGTATCTTTGGGTAAAGCCAGTCATAAACATCTGACCATAATGCATCCACAAACATACAGGGATGGTGGGTTATtttgccgtgtgtgtgtgtgtgtgtgtgtttctctcgtCCTGTTCTCGTCCCGATTCCAGGTCGCCCCGCCCTAATTGGTCGtgctgcgtgcgtgcgtgcgctgtGATTGGTGCTTGGAGatgcattttttgaaaagtcGTTTCTGACTCCTTTAACTGTTCCGCATTCCGGGTTTCTAGACCTCTCCGCCATTAGTTCGTCACTTTCAACGATCGCTGCTGATGCTTTCGAAGGAAAGATTCACTTCTGCTGGATGTAAAGATGCAAACCAACAGCGTTGTCAAGCGAAGTTCAGAGAACGGAAGATCACATTTCACTCATTTTTGGAAAGTGGATGCAAACCAACAACATTGTCAGAGTTTCGAGATCAGTGCAGAAAATGGAAGACTACATTTCACTCATTTTTGGAAAGTAttTCTCTGGAATCTCCAGTTGAAGACATCAAAATCTTTAacctgtgtcagcctggacagacGTCTATTCCAGTTCTTCCTACACCACACTAATCTCTCTGCCTATGTATGGATTCGTGACTATTATGTTCTCTAAAGatattactggagcaaaacaacagcaccctTGACTGAAGTTTCTTTTAGTGGCCAGTATAATTAAAGTCTTagaaagttttattattattatttatttttttggagctgcaaataattttttccctctctcacacaaacacactaaacgACTGCTTGTGCTTATAGTACAGTGACAATATTGACAATATTTTAGccgtttttataattatattacataaatttttaTTGTTACAAAAATCTTAAGTAGTTGTCACAACCCGATGCACACTTGAGTTTAAATGAGAATGAGAATTTCTCAACAGGGgacaacactaaggattttttctaaggATTTTTTATTGGCCTGGTGTGGAATATAAAATTGAAATTAAGATGGAGAGCAGGAAGtagaaaaaaactgaatgggagacataAAGGAAAGTCCATATTTTTTAAATCCATACCATATTACAAAAGAGAAAAAGATAGAAATATAATGAGGAcagttttc
>TCONS_00053123
GACCTCTCCGCCATTAGTTCGTCACTTTCAACGATCGCTGCTGATGCTTTCGAAGGAAAGATTCACTTCTGCTGGATGTAAAGATGCAAACCAACAGCGTTGTCAAGCGAAGTTCAGAGAACGGAAGATCACATTTCACTCATTTTTGGAAAGTAGTCTAACCCACGGATTTAACCCGGGCGTTTCAGCTCTCCCTGCCTTCAACTCATTCTGTCCTAATCTGCAATCCGCTACTACCAATCCCGAGACTGTCGATATGTTATTCAAAAAAGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053121 False 1378 lncRNA 0.35 3 49186398 49188566
TCONS_00053122 False 1354 lncRNA 0.39 4 49186398 49372676
TCONS_00053123 True 275 lncRNA 0.45 4 49206136 49372185

Neighbor

gene id symbol gene type direction distance location
XLOC_026751 dnajb1a coding downstream 22715 49150822 ~ 49163683 (-)
XLOC_026750 gipc1 coding downstream 48394 49126103 ~ 49138004 (-)
XLOC_026749 trim35-12 coding downstream 75688 49103210 ~ 49110710 (-)
XLOC_026748 BX784040.1 coding downstream 108519 49077762 ~ 49077879 (-)
XLOC_026747 NA coding downstream 149616 49023900 ~ 49036782 (-)
XLOC_026753 si:ch73-167f10.1 coding upstream 7098 49379774 ~ 49382896 (-)
XLOC_026754 NA coding upstream 33482 49406158 ~ 49418345 (-)
XLOC_026755 samd1a coding upstream 53117 49425793 ~ 49447949 (-)
XLOC_026756 prkacaa coding upstream 87152 49459828 ~ 49504023 (-)
XLOC_026757 asf1ba coding upstream 132243 49504919 ~ 49514874 (-)
XLOC_026745 NA non-coding downstream 185105 48999903 ~ 49001293 (-)
XLOC_026739 NA non-coding downstream 712644 48461497 ~ 48473754 (-)
XLOC_026738 NA non-coding downstream 858265 48323540 ~ 48328133 (-)
XLOC_026761 NA non-coding upstream 561960 49934636 ~ 49937735 (-)
XLOC_026769 NA non-coding upstream 966104 50338780 ~ 50341046 (-)
XLOC_026770 NA non-coding upstream 1060875 50433551 ~ 50438278 (-)
XLOC_026771 NA non-coding upstream 1061117 50433793 ~ 50434423 (-)

Expression


Co-expression Network