LOC110532606 (LOC106572647)


Basic Information

Item Value
gene id LOC110532606
gene name LOC106572647
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 62804198 ~ 62806118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616652.2
CTGACAAAATATGTATGGGAACGGGTGATGGCATTGATACAACTGGTGGCTTACAATAAATTAATAGTTAAGGATCTATAAAGGACCTAACATTATAGATCGTATTGTGAATTATGAGAGATTCTAGTTTCTAGTATCCTCCCCATCAGAACAAAACTGTGAAATTCAAATGAAATTTCATTATTCGTCTCTCACCATAGAAATTATTGGTTTGAGATACGTTTTACACAGTCTATTTAGCGCCTTTAAGAAACCGTTAAAAGGAACAGCGGAGTTCTCCTTTGATTGGATTTGGTGCGAGTGAAAGCGAGGTATTTTGAACGTAACTGTCAATCACCGCGGTTAAGAACCGCCCATTACTGGATAGGGGTATATTTAGAGCTGGTGAGGGTGCACATTACTGTCATTCAAGCTCTGATAGTCAGGGGGTAAGGATGCCTGCGTCACAAACAGGCAACTTCTTTGAGAGAAATATCAACATGCCCCCTGGATATCAGATACCGTATTTGGGAGGTCCAGCTGGGGTACAACAGCAACAAGCCCCTTATCTTGCTGCGATGGCTGGGGTACCTTTGACATATTCCGGACTACAGGGATACAACTTCATCCCCTATCCACACCACAGATACATTGCGAACATGAACAACTCTTTCGACTTGAAAGCTGTCTCCCCATATCATCAAGCGCTTCTCGGCCGAGGAGGTCCATTCTACCCGCAATACCGACCAGGCGCATCCGATGACCTGATCAGGGTCGCCAAGGTGgctacccgggaaagcaccagcGCGCTCAAGGCCTGGTTGAACGAGCATCTTAAGAACCCGTATCCCACGAAGGGTGAGAAGATCATGCTTGCTATTGTAACCAAGATGAGCCTCACGCAGGTTTCCACTTGGTTTGCCAACGCCAGGCGTCGACTGAAGAAGGATAATAGGGTAAACTGGGCGTCCAAGGGGAAATCTGACGAGGAGGGCGAGAGCGACGAAGAGGAGGGCGAGGGCTCTCTGCAGAAAACCCGTTTGGACGAAGAAGATGAGATAGATCATCCAACCGAAGATGACAATGAGGATATTGGACATAGAGTATCCAACTCAACGACAGAGCCGGTGGATGAGCGCCTTGTGAAACAGTCAAACGACGACAATAGAGCTGGTAGGCTCGCGGCGCACGCGGAAAATGTGGTAAAGAATGACACAGAACCCAAATCATTTCCAGCTAATCTGGAAAGTAAAGATAACGTTGAGTGTCAAAAACCCAAAATATGGTCTTTGGCAGAAACCGCGACATCGGAAACGGGGAAAAAGCCCCAGTACAGTGCTTGTCATCCTGGCACACAAGTTGGCAAATTCTGGGCAGAATGGGCATCAAGGAACGGACTGTACATTCCCGTATACCCTGCTCACGATATTCTATAACAGAGCATTTATTATTTAAAACAGTCGAGGACACATTTTTACATCTTATGCACTTTAAACTACCAAATTCCATGGCGTGGGTCTACTTTTTGACGTTTAAACGTGGACTAATTTGCTATGAAAATGCTGGGTATATGTTTGTTAGGCTACTTGTAAGACCAACAACTCTTACAGAACATGTTATGtgtacatatgtgtatatatattttcgaTGAACAATCTGTAAATTCTTATTTCATTTGTCTtatcacaaaaaaatattttggtaaAATAAAATC

Function

NR:

description
iroquois-class homeodomain protein IRX-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616652.2 True 1693 mRNA 0.44 2 62804198 62806118

Neighbor

gene id symbol gene type direction distance location
LOC110532605 LOC106572639 coding upstream 14388 62762388 ~ 62789810 (+)
LOC110532604 LOC106572641 coding upstream 47296 62639800 ~ 62756902 (+)
LOC110532602 NA coding upstream 176353 62623239 ~ 62627845 (+)
LOC110532601 NA coding upstream 184519 62615962 ~ 62619679 (+)
klhl21 LOC106572566 coding upstream 197779 62579179 ~ 62606419 (+)
LOC110532607 LOC106572638 coding downstream 11059 62817177 ~ 62867560 (+)
LOC110532609 LOC106572637 coding downstream 91595 62897713 ~ 62904419 (+)
LOC110532611 LOC106572634 coding downstream 206250 63012368 ~ 63026673 (+)
LOC110532612 LOC106572633 coding downstream 227356 63033474 ~ 63045519 (+)
LOC110532614 LOC106572631 coding downstream 553464 63359582 ~ 63363557 (+)
G828868 NA non-coding upstream 199230 62601293 ~ 62604968 (+)
G828838 NA non-coding upstream 230205 62573179 ~ 62573993 (+)
G828832 NA non-coding upstream 233327 62570625 ~ 62570871 (+)
G828598 NA non-coding upstream 407183 62396791 ~ 62397015 (+)
G829013 NA non-coding downstream 74433 62880551 ~ 62881096 (+)
G829074 NA non-coding downstream 166921 62973039 ~ 62973534 (+)
G829082 NA non-coding downstream 175213 62981331 ~ 62981728 (+)
G829085 NA non-coding downstream 178895 62985013 ~ 62985236 (+)
G829118 NA non-coding downstream 245054 63051172 ~ 63116057 (+)
G828274 NA other upstream 613592 62189182 ~ 62190606 (+)
G827039 NA other upstream 1552960 61212461 ~ 61251238 (+)
G826751 NA other upstream 2142292 60661369 ~ 60661906 (+)
G826653 NA other upstream 2240801 60563080 ~ 60563397 (+)
LOC110532619 LOC106572645 other downstream 759460 63565578 ~ 63601970 (+)
G830755 gp182 other downstream 1507960 64314078 ~ 64316656 (+)
G830923 NA other downstream 1859630 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 2073589 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 2560173 65186569 ~ 65405501 (+)

Expression


Co-expression Network