sall4 (LOC106572630)


Basic Information

Item Value
gene id sall4
gene name LOC106572630
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63402411 ~ 63410632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616669.2
ATGCATTATTGATACTAATAATTACGTTGACATGCGCATTTCTACTTGAGGAGCTAATTTTACAACCCGAAGAATTTGTAAAGAAGGGAAGAAAATTGTGTTACTGTTTGTTCCCGATGTTTGCACCATGTCGAGGCGTAAGCAAGCTAAACCACAGCAAATTAATTCCGATGATCCCGGTTCGTCAGAAAAGGGGGTTCTACAAGATGGTCAAACTGAAGAGGTTGGAAATGAGGTGAAGAGGTTTCGAATGGACACAGCAAAGGTCTGCACCAAATGTGGTGCTGAATTTTTCAACGAGGTTGAATTTCTCGAACATCAGAATAATTGCACTAAAAGTCACGAGGCAGTCATTGTGAAAGATGGCGAGGGGAGAGAAGTACCAGCGGAGGTCTCACAAGGAGACTCCCCTGGTGACTTCCAGAATGACCACAGGGACTGCCAGCCCAGAAGTAATTGTCTATCAAAGTCCAAAGCAGAGTCTATGGAAAGGATGGATGACGAGGAAGAACCTAAAATAAATGGTGCGGAACAACCACCCAAACAAGACCAGGTAGAGATGTCTGACAGTCCCAGGCCTGAAATTAGTCACCACCAGAGCCAGACCTCATCCAAACTCCAAGATTCAAATGTCACCTTGGAGTCCATGCCTGGCACCAAAGTGGCCGTCACTCAGCATTCATCGAACGTTGGTTTGAACAACCGCAGGTCTGCACAGACATCCCAGGAGGCCTTGCAAGCCATCCCCATGATCCTGGAACAGCTGGTGGCTCTTCAACAGCAGCAGATCCAACAGATCCACCTGACTGAGCAGATCCGTATCCAGGTGGCCATGATGGCTCCACAGAGCCTCCACTCTGTCAATGGGGCAGCAGTTGACCCTCTTAAAGCCCTAGGAGCTCACCTCTCTCAGCAGCTCTCTGCTGCAGCAGCCCTGATCAGTAAGAGGACTAGCCGCCAGAGTCTCTCGATAGAGTCCCTCAAACAGGGCAAACTACCCCAGTCCAACAGCAACCCCACCTCACTGGCTGGAGGACTGGGGCCAATGCCCTCCAAAGCTGATATGTTGAAGGGGCTTCCAGACCTGGCCAACCGCCTACCAGTGTTACTGCCTCAATCACCAGGCTCCAAGGCCTTTCAAAGTCCCTTCACTGGCCTCTCGTTAGGGATGGATCACTCTAAGAAAGTAAAGAGCAAGATCCCAAACATGCCGGAGTCTAAAAACGGGTCTGGTTGCGACAGCATGTACAAGCACAAGTGTAAGTACTGTGGGAAAACCTTTGGGAACGACAGCGGGCTCCAGATCCATTTGCGCTCGCACACTGGAGAAAGACCATTTAAATGTAACATCTGCGGAAACCGCTTCACAACCAAAGGAAACCTTAAAGTGCATTTCCAGAGACACAAGGAGAAGTACCCTCACATCAGGATGAACCCACACCCTGTGCCAGAACACCTTGACAACATTCCCACCAGCAGCGGCATTCCGTATGGCATGTCAATGCCAATTGAAGAATCCAACATGGTGGACATGAAGCCAATGCTTGGCATCCCATCTCCAGGTTTCCACCCATCAGCACTGCAGGGGTTCAAGCCTTCGTTTGAGGGTTTCAAGAGCGACCCGTTCTCCCAAAGACCGGCATCATCAGGAAGTGACGGAGCATCAATTTCCTCAAACGCGTTCAATCACGAAATGGGCTCTGATCAGCACCACCAGGTATCTAACGAGCTAATGGGAGCGCTGCATCACATGAACGGCAAAGACCCTCCCGGCGACCATGAAGGCTCTGAAACGGCCAAATTACAGCAGATGGTGGATGGGCTGGAGAAGAGGACCAATGACCCAAACGAGTGCTACATCTGCCACAGAGTGCTCAGCTGCCAAAGCTCCCTGAAGATGCATTACCGTACACACACGGGTGAGCGGCCCTACAAGTGTAAGATCTGCGGCCGTGCCTTCtccaccaagggcaacctcaaagCTCATTACAGTGTCCATCGGGCCAACACGCCCCTCAAGATGCAACACTCCTGCCCCATCTGCCAGAAGAAGTTCACCAATGCTGTGGTTCTCCAGCAGCACATCCGCATGCACATGGGAGGCCAGATCCCCAACACCCCCATGCCAGAGACTCAGTTAGAGGCCTCTGAAGAAATGAACTCCCCTCTGCCCGACGAGAAGTCCATGGACTTCAACGGCTTTGAGAGCATGGAAGACCAATACACAGAGCTTGACTCTCAGGAGAAACCAAGCAAAACCTCAGATTCTCTCCCACCATCTGCGTCTGAGGAACCGCACCAACCCCATCAGGCCCCTCAATCCTCTGTGTTCTCCAGCATAGCGGCACTGGAGAACCACATGAAGAACCTCACCTCATCTCTCAACCTGCAGCACCAAAGCAGCACCGCTTCAGAGAGCAATGGAGTGCCCCCCAAAGAGTCCACCTCAGCCTCCGAGAGCCTCCGGGAGCAAGAGTACCAGAGCGGCCGCAGCCCCACCGTCTCAGACCCTGTCTCCTTCCACTCCTCATCCCCAGTCAACAGCCATGTGGGAAGCAGCAAGTCAAAGTCCCCCGAGTTAGCCTTCCCTGAGGATTACACTCGGAACAGGCCTAGACCAGACTCTGACAGCGGCTCTCAGGATGCCAGTGAGTCCAATGGGGCTCTGGACCTGACGGCACCCAGCTTCACCCCAAAAACCATAAAAGAAGAGCCTGGCCTGTACTTCACTAATGGAGAGTATGCTCCCAGCCATTTGCCTCCTTTCCTGAGGGTGCCCTCCAGTCTGGTCCAATTGGAGATGCAGATTCCCCCAGAGAGCTCCATGGGCATGAGCTCTCTATTTGGCTCCCAGATGCCTCAGGGAGCAGGAGGGCAGCCAAGGGATAGCTCAAGTGCTCCCCGTAGATCCAGCAAGCAGCACCTGTGTAACTCCTGTGGCAAAAACTTCTCCTCTGCCAGTGCCCTGCAGATTCATGAGAGGacccacactggagagaagcccttCGGCTGCACCGTCTGTGGCAGGGCCTTCACCACTAGAGGCAACCTCAAGGTCCATGTTACAACTCACATGTGGAACAGCTCTGTGAGGCGTGGCCAGCGCCTCTCTCTGGACAACCCCATGGCCCTGATGGCCATGAGCTCAGAGTCTGGCAACATAATGCCACCTCCCAAGGAACTGGATCCTCAGCCAATGAACTTCGACCAGTCTCTGTGGAACCAGTATGCTGCTGCTTTCACCAACGGCTTGTCCATGAAGACTAACGAGATCTCTGTGATCCAAAATGGTGGTATGCCTGGTAGCCTGGCTGGTGGTCCTCTGTTCCATTCGACTGGAGGCCTGATGGAAATGGATGGGTCCCACTCTGGCCTGCCTGCCACCATGGCAGAGATTGAGAAGAATGGCTCAGAGAGTGTGGCCAAATCTCAGTTCCCACATTTCATGGAGGAAGGGAAAATTGCAGTGAACTAGTTTTGAAATGGGAGAAGGCAGTTTTATCGGTATTGcctagttttttttgtttttttttcattgaTTGTGTGCAGATTTTTGAATGTTCATAGTAGCAATGTTGGCTAAAATTTGCCACTAGGTCCAGGTACAATAAACATGAGCTATTCCAACACTTTTAGGAGATAATCCTTAACCCTTGCTGAAGATTTCTGGTTTTTGCAAAGCCTATTTGAAACTCTCAGTAAATTAAACGATGCAGCTCTTCACTAACCTTTCATTTGAACAATTCATCCCTTAACTGTTGTATTTAGTTGAACTAGATATAACTACTATAGTTGTATTTACTGTTTATTTTTTCTCAATATATGCAGGTATTTCTGTGCGTGACCTTTTTTAGTTTTGTATCCAGAAGTTGAATGTCTGGCTTACCTGAAACTGCTTTGATTCAGAATGTCTCCCTCCCCGATGGAAGAACCTGTACTTTGAATGATTTTGTCTAGTGTTAGAAAATCTTCAGTTTATGACTGTGTACACCATTGTTTTAGTGCCGATAAACAAGGAGTTATTCTGATTCCTCTGCACAGTACATAACTATTTGGCACTCCTATTGTGTGCAATACATTTTAGGAAGTTTGTGATGGCCAACAATTTATCCCGATGTTTGAGGGAATCTTTTGGAGATGCTCTGAGGTGGTCTACTGAGAGTTCTGTCAGGTGTCATGTACTTTTGTTTGATCCAGATAGGCTTACTGATTTGCTCAGTTGTCCATTTTGGAGGTTAATACTTTTTTCAGATACGTTACATATGTTGAGACAGTCATTTCTTTGCCTTTCTCTCTAAAACTGAAAAACCTCATGCCAAGTGCCTAGCTAGAATTGGAATTGTTGCTCTAttgtcttattttttttttaagcaccACAAGATTGTAATGGttacttttgactgatactgtttGTCCATGTAGCATATTGTGCTTTTTTTCCCCACACTCATATTTACAAAGATCTGTTCATTATTGTTTAATTTTTGCTTCCATTAACCTTTGCCGACCAGCAGAGCTTCTGCGTCTTTCGGTGGGTTGTTTTCTGAAGGATATGGGTGTGTTTTAAATGACACggtattccctagtgcactacttttgccctgGCTGAAGGTAGTGCACCATATGTGTATATGATGCAATTTGGGGGGCAACCATATAAAGTAGAATTCTCTCAATCATACCTGCACTTTAAATTTCTTCACGTTTTGTTAAGCTTATAATTTCGATGGCTACATTTCAAAACCATCCAGCTTGACTTTGTTTACCTTGGTGGTCATATTAGAGCGGGCACATCACTGATTTGTCATTTCTTACTTTGAGGACTTGGAAATGTTGACTTCAGAATTTGACTCAATATTCCACTCAATTGCCAACCTTTTTAAGTGACATATTTCAATACTTCTCTCCATTGATTGATGAACGTGCAAATCTACTATACATTATTTTATCAACCGTTGAATCTTAAACTTTTTGTTAATTTATATCACGTCATGTCAGAGCGTTTGGGGGTGACTCTCTACCTCATTTAGATATTTGTTTTTCCTCCACCTACCTTCAAAGGTATATTCGCTCTGATACATTCTGGGTAAGCAAAGATATGCTTTCATTCCTCATCTACTGAGTTGTAATGAATGTATCACTGGAATCTTTGCACAACTCTGAATGCGCAGATGAACTCTAGAATACTTTTGTACATTCCCCATTAAAATGCATTTACCAAGTTGTGcctttgtttaaaaaaatctaatcatGTCATATCTGCTTTGAGGTTGTCTCTACAATTGAAGAAACGTTGAGCCTGTTTAGGCTGGTTTACAATGTAAATGTCTTATGTCCTTTCAGTTTCCTTGTCACCTAAATGTTACTTTCTGGtcttgtaaaaataaaaatcaggGTGACTTTTCCAA

Function

NR:

description
sal-like protein 4

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616669.2 True 5408 mRNA 0.47 4 63402411 63410632

Neighbor

gene id symbol gene type direction distance location
LOC110532614 LOC106572631 coding upstream 38854 63359582 ~ 63363557 (+)
LOC110532612 LOC106572633 coding upstream 356892 63033474 ~ 63045519 (+)
LOC110532611 LOC106572634 coding upstream 375738 63012368 ~ 63026673 (+)
LOC110532609 LOC106572637 coding upstream 497992 62897713 ~ 62904419 (+)
LOC110532607 LOC106572638 coding upstream 534851 62817177 ~ 62867560 (+)
LOC110532617 LOC106572629 coding downstream 572 63411204 ~ 63453087 (+)
LOC110532618 LOC106572627 coding downstream 50331 63460963 ~ 63513676 (+)
LOC110532619 LOC106572645 coding downstream 154955 63565578 ~ 63601970 (+)
LOC110532620 LOC106572626 coding downstream 195935 63606567 ~ 63647680 (+)
LOC110532622 LOC106572625 coding downstream 238132 63648764 ~ 63695332 (+)
G829267 NA non-coding upstream 108781 63293423 ~ 63293630 (+)
G829261 NA non-coding upstream 124319 63277892 ~ 63278092 (+)
G829257 NA non-coding upstream 130668 63271472 ~ 63271743 (+)
G829218 NA non-coding upstream 160316 63212238 ~ 63242095 (+)
G829118 NA non-coding upstream 286354 63051172 ~ 63116057 (+)
G829347 NA non-coding downstream 43200 63453832 ~ 63454040 (+)
G829351 NA non-coding downstream 46914 63457546 ~ 63457790 (+)
G829530 LOC100194719 non-coding downstream 358485 63769117 ~ 63771336 (+)
G829539 NA non-coding downstream 379333 63789965 ~ 63790241 (+)
G829540 NA non-coding downstream 379789 63790421 ~ 63790709 (+)
LOC110532602 NA other upstream 774569 62623239 ~ 62627845 (+)
G828274 NA other upstream 1211805 62189182 ~ 62190606 (+)
G827039 NA other upstream 2151173 61212461 ~ 61251238 (+)
G826751 NA other upstream 2740505 60661369 ~ 60661906 (+)
G826653 NA other upstream 2839014 60563080 ~ 60563397 (+)
G830755 gp182 other downstream 903446 64314078 ~ 64316656 (+)
G830923 NA other downstream 1255116 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 1469075 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1955659 65186569 ~ 65405501 (+)

Expression


Co-expression Network