XLOC_026757 (asf1ba)


Basic Information

Item Value
gene id XLOC_026757
gene name asf1ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49504919 ~ 49514874 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052077
CGTTACTCTAGATAATTTTTgctttatattttcttttaatttgggAGGAGAGACAACCTAAATCGTTTCGTTCTACCGCTTTAACTAACGTTATATTGGACTTGCAAAACACAATAGCTTGCAAGCTAAACAAGTGAAGCAAAGTCATCGAGAAATTTACTTTACAAATTTCTGTcgagttttcagttttttttcggTTTTGCTTTTTTGAAGGTGTGAACACCCCTTTTCTTGCTAATATAACTTTAGTAGAGTTATGGCAAAAGTACAAGTACTAAATGTGGCAGTCCTGGACAACCCGAGTCCGTTTGGAAACCCCTTTCAGTTCGAGATAACGTTTGAGTGCATGGAGGATCTTCCTGAGGATCTGGAGTGGAAGATTATTTACGTGGGCTCGGCAGAAAGTGAGGAGTACGATCAGACTCTTGACTCTGTCCTGGTTGGTCCAGTTCCTGCAGGCCGACACATGTTTGTGTTTCAGGCGGATGCTCCAAACTGTTCCCTAATACCAGAGACTGATGCTGTGGGTGTCACTGTCGTTCTGATCACGTGCACATACAGAGGACAGGAGTTCATACGCATCGGCTATTACGTTAACAATGAGTATACGGACACTGAGCTTCGTGAGAACCCACCACTTAAACCTAACTATGGACAGCTCCAGAGGAACATTCTGGCTTCAAACCCACGTGTAACCAGGTTTCACATCAACTGGGAGGGATGTGCTGAGAAAATGGAGGATTCTGAGAACGTGGACCCTGCACCAAACGCCATGCTGCCCCCATCCTGCACCCCAGGAAAAGCACCTCTGCTCGGCCTGGTGCCAGACAACTCCATGGACTGTTTGTAGTGACGCAGACTCCTGTGAATAATCCTCACATCTCAAGGCTCATCCATGAGCTCAGGTCAATCTGGACACTGTGGAGGAGAGGCGGGATTATTCAAACGTATCACAAATAAAAGCTTTATCTAATTGTGTTTCAGTCAGCACGCCTTATTGGTTCCAAATGAGTGCTGTGCAGAATTCTTTAGATGCTTTCAGCATGCAATAAAGATGTTTGCTTTTCAGTTTGAAACATGAGTGAGTCATGAATCTAAGACCCAATTCAGGAATTAGGATGTGCTGAATCTAATGATCCAAAACCAATCCATTCATCTAAACCGAAAGGGGGTGGGAGATCAGCGCACTAGATAAGATGTCAGATGCGCAACTAATTTAACAGACGCAAACAGCAGTACTTTTGTAAaggacatttatttttgtattatattgtgtgtgtgtgtgtgtgtctgtatatatacTTGTCTGTGTCTTTTTGTATCCGGTTCTCATTGAAATAAATGATTTGTAACGTG

Function

symbol description
asf1ba Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Is expressed in proliferative region. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0006336 DNA replication-independent nucleosome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-197 Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Is expressed in proliferative region. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).

Ensembl:

ensembl_id ENSDARG00000101037

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052077 True 1356 mRNA 0.43 4 49504919 49514874

Neighbor

gene id symbol gene type direction distance location
XLOC_026756 prkacaa coding downstream 896 49459828 ~ 49504023 (-)
XLOC_026755 samd1a coding downstream 56970 49425793 ~ 49447949 (-)
XLOC_026754 NA coding downstream 86574 49406158 ~ 49418345 (-)
XLOC_026753 si:ch73-167f10.1 coding downstream 122023 49379774 ~ 49382896 (-)
XLOC_026752 NA coding downstream 132243 49186398 ~ 49372676 (-)
XLOC_026758 CR847534.1 coding upstream 36706 49551580 ~ 49554912 (-)
XLOC_026759 zgc:153426 coding upstream 44387 49559261 ~ 49566364 (-)
XLOC_026760 gcgra coding upstream 242704 49757578 ~ 49925313 (-)
XLOC_026761 NA coding upstream 419762 49934636 ~ 49937735 (-)
XLOC_026762 si:ch1073-100f3.2 coding upstream 517520 50032394 ~ 50046004 (-)
XLOC_026748 BX784040.1 non-coding downstream 427040 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 468137 49023900 ~ 49036782 (-)
XLOC_026745 NA non-coding downstream 503626 48999903 ~ 49001293 (-)
XLOC_026769 NA non-coding upstream 823906 50338780 ~ 50341046 (-)
XLOC_026770 NA non-coding upstream 918677 50433551 ~ 50438278 (-)
XLOC_026771 NA non-coding upstream 918919 50433793 ~ 50434423 (-)
XLOC_026773 CR812464.1 non-coding upstream 1213985 50728859 ~ 50749116 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000033_01336781_01348511 ASF1BA, AS1LA, AS1LB, ASF1BB, ASF1B.L, ASF1B coding CI01000033 null 1336564 ~ 1349405 (-)
bowfin (Amia calva) AMCG00008632 asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596 coding CM030126.1 CM030126.1 6908774 ~ 6915444 (-)