LOC110532625 (LOC106572622)


Basic Information

Item Value
gene id LOC110532625
gene name LOC106572622
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63710544 ~ 63716275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616687.2
CTGCCGGAAATTACGTCAATGTTGTTTTTCTGGCTGTACCTACCTAGctacagtaacgttagctagataattTATTAGTTAGTCAGAAAGGCGTAACTTTGTGTAACTGTAGCTTTTTGATAGCAAATAATCCCCATATACCGTGCAGATGGCAGACCCTGCGGTGATGGCGGGTGGATTCAGTGCTGTAGTAGGGCGTTCAGGGGGTGGTAAAGCTACGTCCAGTCCGGCAGAGAACTACCAGCTTGCCCGGCGTCGCACCCTCCAAGTGGTGGTGAGCTCGCTGCTGACAGAGTGTGGGTTCGAAAGCGCAGAGAAGGCGGCCGTGGAATCACTCACTGAGATGATCCAGAGCTTGGGACGTTGTGCCAAGGCGTACTGTGAACACACAGCCAGAATCACGCCCACCCTTTCTGACACTGTGGTCACACTCATTGAAATGGGTTTCAATGTGAACACTTTGCCAGTGTATGCCAAGAGATCACAGAGGATGGTTATAACTGCCCCTCCAGTAACAAATGCTCCTGTGATCCCGAAGGCCTTGATCGCTGGACAGAAACGCACTCATCCCTCCCACATACCCAGCCACTTCCCTGAGTTCCCTGATCCCCACACCTACATCAAAACTCCAACGTTTCGGGAGCCTGTGTCAGATTACCAGGTGGTGCGAGAGAAGGCAGCCTCTCAGAGGAGAGACGTGGAGCGAGCTCTCACACGCTTCATGGCCAAGACCGGAGAAACACAGAGCCTTTTCAAGGATGACATCACTGCCTTTCCTTTGATCGCAGCGCGGCCCAGCTCCATCCCGTATCTCAGTGCCCTACTGCCTTCAGAACTGGAGCTGCAGACTTTGGAGGAGACGGACTCCTCTGAACAGGATGACCAGACCGACAGCGAGAACACGCCAGGCAACAACCTCAATGATGATCCTGGAGCTGATAAGGAGAATTCCATGCTGCCCCCTGGGGGTGTGGTTCCCTCAGTGAAGGCCAGTGAAGAAAACATGATTGACAATCCATACCTGAGGCCGGTCAAGAAACCCAAAGTGAGGAGGAAGAAGTGAACGTTTACTACACTTAGCTACTAATTCGGACTTCTATCTGTCAGACACAACAAAGGGTCAATTGTAAGAAGCAGTTAACGGTTCTGTGCCTCTGTGAGAAGTGGACCCACGTGGACATCTGGAGTGAGGGACTCTCACCTGAACTTTCTACAGGGCAAATACTGCTCAATATGACTTTCTTCACTAGTTACATTCATGAGAAAACAAACATTTTGCTATTCATTTTTTTTCCTTcagatttgtggagtggttcTGTCGTGAAAGAAAATATGTAACATTTCCAAATTATGAGTTCAGTCATTGATAAATAATGAGTAGGAAATCAATGTTTTGATTTGTATTTTAACATGAAAACCTTTAATTTACCCAAATGATACATTTTAGCCAATCACCAAATACACAAGGACAAAAATCCGGCAACTTTGTCTACTTTGTATACCTGGAGAGAATGGTGAATATCTAGATTAAAGCGGATATATAAAAACACTTTATTTATGCTTGTATCAGGTTGACCCCCTGCAGAGTCAGGAGTACAACAACTGTAGATATGTCCTTTGCTTGGCAAAGTCCTTGTCACAAAGCAGCTATGTAAGACAAACATGCAATGGCATTAGATGTTATTGCTGAAGATACATTTACAAGAATCTCTGTATTACTTTGTATAGTAATGCAAAGTAAAATAACACACCTCTGTCCTCAAGGCTTTCCTCTTGAGTCGGGGGCAGTCTACCCCAGTCTGAGGAGCCAAAGTTCATAGGCCAAAACACCTTCCGGCTCTGAGTAGTATCATGAGCATATGCCCCGGGGCTGCATCATGAAAAACAGCTGTTAGTGGTCAATCTATTTGAAGGTTGATACATGCAATGCATTTATACAATAGATAATCAGTGTTTTCCTATCATGGACAGTTTGGAGAGTGCCATTGCCAATAACCACACACTCACCCTGGGTTGGAGTCAgctgtaacaggcttggtcctgAACCTATTTGTGGTGTAGTTGAAGGGGGTTCTGCCAAGAGGGTACTTTACACCAGGTTCTGTCCTGCTGATACTTCCGAGGGGAAGGAGTGATTATCTGGGTGGTGGGAAGAAAACACATAAGGGTATTCAGAGACCTGAAAATGTACGGAAAGTAGAGGTTACAATCTGCATCACTCTCAGGTCTCTTCTGTACATCATACAGAATGGTAGCAACTTGATGGGACAATGACCAACATGAAACGCTtcacaataaaatgtattttgtattattttaa
>XM_021616686.2
TGCCGGAAATTACGTCAATGTTGTTTTTCTGGCTGTACCTACCTAGctacagtaacgttagctagataattTATTAGTTAGTCAGAAAGGCGTAACTTTGTGTAACTGTAGCTTTTTGATAGCAAATAATCCCCATATACCGTGCAGATGGCAGACCCTGCGGTGATGGCGGGTGGATTCAGTGCTGTAGTAGGGCGTTCAGGGGGTGGTAAAGCTACGTCCAGTCCGGCAGAGAACTACCAGCTTGCCCGGCGTCGCACCCTCCAAGTGGTGGTGAGCTCGCTGCTGACAGAGTGTGGGTTCGAAAGCGCAGAGAAGGCGGCCGTGGAATCACTCACTGAGATGATCCAGAGCTACATATCTGAAGTGGGACGTTGTGCCAAGGCGTACTGTGAACACACAGCCAGAATCACGCCCACCCTTTCTGACACTGTGGTCACACTCATTGAAATGGGTTTCAATGTGAACACTTTGCCAGTGTATGCCAAGAGATCACAGAGGATGGTTATAACTGCCCCTCCAGTAACAAATGCTCCTGTGATCCCGAAGGCCTTGATCGCTGGACAGAAACGCACTCATCCCTCCCACATACCCAGCCACTTCCCTGAGTTCCCTGATCCCCACACCTACATCAAAACTCCAACGTTTCGGGAGCCTGTGTCAGATTACCAGGTGGTGCGAGAGAAGGCAGCCTCTCAGAGGAGAGACGTGGAGCGAGCTCTCACACGCTTCATGGCCAAGACCGGAGAAACACAGAGCCTTTTCAAGGATGACATCACTGCCTTTCCTTTGATCGCAGCGCGGCCCAGCTCCATCCCGTATCTCAGTGCCCTACTGCCTTCAGAACTGGAGCTGCAGACTTTGGAGGAGACGGACTCCTCTGAACAGGATGACCAGACCGACAGCGAGAACACGCCAGGCAACAACCTCAATGATGATCCTGGAGCTGATAAGGAGAATTCCATGCTGCCCCCTGGGGGTGTGGTTCCCTCAGTGAAGGCCAGTGAAGAAAACATGATTGACAATCCATACCTGAGGCCGGTCAAGAAACCCAAAGTGAGGAGGAAGAAGTGAACGTTTACTACACTTAGCTACTAATTCGGACTTCTATCTGTCAGACACAACAAAGGGTCAATTGTAAGAAGCAGTTAACGGTTCTGTGCCTCTGTGAGAAGTGGACCCACGTGGACATCTGGAGTGAGGGACTCTCACCTGAACTTTCTACAGGGCAAATACTGCTCAATATGACTTTCTTCACTAGTTACATTCATGAGAAAACAAACATTTTGCTATTCATTTTTTTTCCTTcagatttgtggagtggttcTGTCGTGAAAGAAAATATGTAACATTTCCAAATTATGAGTTCAGTCATTGATAAATAATGAGTAGGAAATCAATGTTTTGATTTGTATTTTAACATGAAAACCTTTAATTTACCCAAATGATACATTTTAGCCAATCACCAAATACACAAGGACAAAAATCCGGCAACTTTGTCTACTTTGTATACCTGGAGAGAATGGTGAATATCTAGATTAAAGCGGATATATAAAAACACTTTATTTATGCTTGTATCAGGTTGACCCCCTGCAGAGTCAGGAGTACAACAACTGTAGATATGTCCTTTGCTTGGCAAAGTCCTTGTCACAAAGCAGCTATGTAAGACAAACATGCAATGGCATTAGATGTTATTGCTGAAGATACATTTACAAGAATCTCTGTATTACTTTGTATAGTAATGCAAAGTAAAATAACACACCTCTGTCCTCAAGGCTTTCCTCTTGAGTCGGGGGCAGTCTACCCCAGTCTGAGGAGCCAAAGTTCATAGGCCAAAACACCTTCCGGCTCTGAGTAGTATCATGAGCATATGCCCCGGGGCTGCATCATGAAAAACAGCTGTTAGTGGTCAATCTATTTGAAGGTTGATACATGCAATGCATTTATACAATAGATAATCAGTGTTTTCCTATCATGGACAGTTTGGAGAGTGCCATTGCCAATAACCACACACTCACCCTGGGTTGGAGTCAgctgtaacaggcttggtcctgAACCTATTTGTGGTGTAGTTGAAGGGGGTTCTGCCAAGAGGGTACTTTACACCAGGTTCTGTCCTGCTGATACTTCCGAGGGGAAGGAGTGATTATCTGGGTGGTGGGAAGAAAACACATAAGGGTATTCAGAGACCTGAAAATGTACGGAAAGTAGAGGTTACAATCTGCATCACTCTCAGGTCTCTTCTGTACATCATACAGAATGGTAGCAACTTGATGGGACAATGACCAACATGAAACGCTtcacaataaaatgtattttgtattattttaa

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 8-like isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K14649 TAF8; transcription initiation factor TFIID subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616687.2 False 2320 mRNA 0.46 8 63710544 63716275
XM_021616686.2 True 2331 mRNA 0.46 8 63710545 63716275

Neighbor

gene id symbol gene type direction distance location
g0s2 LOC106572624 coding upstream 853 63708644 ~ 63709691 (+)
LOC110532622 LOC106572625 coding upstream 15212 63648764 ~ 63695332 (+)
LOC110532620 LOC106572626 coding upstream 62864 63606567 ~ 63647680 (+)
LOC110532619 LOC106572645 coding upstream 108574 63565578 ~ 63601970 (+)
LOC110532618 LOC106572627 coding upstream 196868 63460963 ~ 63513676 (+)
LOC110532629 LOC106572620 coding downstream 12897 63729172 ~ 63737016 (+)
LOC110532631 ada coding downstream 128996 63845271 ~ 63863413 (+)
LOC110532638 LOC106572608 coding downstream 250897 63967172 ~ 63971893 (+)
jph2 LOC106572606 coding downstream 276881 63993156 ~ 64022233 (+)
LOC110532642 LOC105013598 coding downstream 322300 64038575 ~ 64041225 (+)
G829351 NA non-coding upstream 252754 63457546 ~ 63457790 (+)
G829347 NA non-coding upstream 256504 63453832 ~ 63454040 (+)
G829288 NA non-coding upstream 296790 63319983 ~ 63413754 (+)
G829267 NA non-coding upstream 416914 63293423 ~ 63293630 (+)
G829261 NA non-coding upstream 432452 63277892 ~ 63278092 (+)
G829530 LOC100194719 non-coding downstream 52842 63769117 ~ 63771336 (+)
G829539 NA non-coding downstream 73690 63789965 ~ 63790241 (+)
G829540 NA non-coding downstream 74146 63790421 ~ 63790709 (+)
G829541 NA non-coding downstream 74513 63790788 ~ 63791419 (+)
G829543 NA non-coding downstream 76497 63792772 ~ 63792985 (+)
LOC110532602 NA other upstream 1082702 62623239 ~ 62627845 (+)
G828274 NA other upstream 1519938 62189182 ~ 62190606 (+)
G827039 NA other upstream 2459306 61212461 ~ 61251238 (+)
G826751 NA other upstream 3048638 60661369 ~ 60661906 (+)
G830755 gp182 other downstream 597803 64314078 ~ 64316656 (+)
G830923 NA other downstream 949473 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 1163432 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1650016 65186569 ~ 65405501 (+)
G831810 NA other downstream 1798118 65514393 ~ 65514985 (+)

Expression


Co-expression Network