LOC110532624 (LOC106572621)


Basic Information

Item Value
gene id LOC110532624
gene name LOC106572621
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63719206 ~ 63724971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988641.1
TTTTACCCCACGTGACTTGGACTTTACGGAAAAGCAAACTGACGATGGCAGGATCTGAGTCGTCAAGTAAAATGCGTACTAAAATGGCCTTTATTGCTCTTTTATTCGCCTTATTTTCGACTGGAAGTTGTAGCAGTCAGGTACCACTTGTAATGTGGTCCAGTGAAGGGTACACCTTACCACAGCTGGTATCTCCCGCAGCTGGTCACATAATATCTAATGTCCAGCTGATGGCCTACCTAAACTCTGCTCTGGGATCTGCCCCACACAATATGCTGCTCTTCCTACAGGACAAGCTGAGCAAAGATGACTTCACAAGGTATGGAGGAGTTTTTGGAAACAAGCAAGACAGTGTCTTTCCTAACCTTGAGtctgcgTTACAGTCTTCGTCTTCACCGTTGGTGCTGCCTGCCCTGTCATGGCTAGGTGCTAGTGCGGTCCCAAGCCTGCTACAGGAGAAGCTGGGTGTTTCCCCACTCAGCGTAGACCCAGACACACTGGAGCATCTCCGATTCAATGCCTCAGAAAACACTCTGCTGGTTATCAACCTGCCATATTCTTCTGGTGCTTACCTGTCCTGTCAGGATGTCCTGCGTAACAATGaTGAGGTCATTGGTAAGGTTCTGAGCATCATGAAAGCCCAGAGTGTGCCCTACACTGCCATTTACACTGGACTCAAGCCCTCAAGAGTGATTGAGGAGCCGTCCTTGATTGTCCAGTCTTCTATGAGCCGTTCCTTGCTGCAGGCAGTTGTGGATGAGGTCAAACCTCCTCTGATGTTCAATTCCACCAGAGGCCCTTGCATCATGCTCTGGGCCCAGAATCTAAACGTCAGCTTTAGTGACAAGGAATGGATTGATCTCGGTCCATCGACCTTTGCTTCTGGTGGCTCTGTGAGCACGTCTGGGTCCTTCTGTAATGAAACCAACTCACAGCTTGTCCTTGATTATGGGAGTTCTGTTTCACCTTACAATCCCTTCCGTCTCATCTTCTCCATGAGCCAGCGGCGCTATCCTGTGTCTGCACGGAACTGGTTCACCCTGGACACTGTGGAATTGGTATTCAACACCCTAACAGCCACCTACAATGGCAGCCACGGAATCTATGCCCCGGCAGAGTACTCTTTCCACTGCCAAAATGTCAACAACTTCCGCAATGCACTTCTAGTGCCCCGCGCTCAGAATGCCACCCAGTGGAGAATCCTCTTCACTGACTTCCAGATCCAAGGCTTCAGCATACTGAATGGGACAACAGATTTCTCCTATGCCAGTGACTGTGCTGGCTTCTTCACACCAGGGATCTGGATGGGCCTGATCACCTCTCTGCTGATGCTGTTGATCCTCACCTACGGCCTGCACATGATCATGCAGCTACGCTCCATGGACCGCTTTGACGACCCTAAAGGCCCCTCCATCTCAGTGCCTCAGTCGGAGTAATGAAGACGAGACAATGCCCCCTAGACTGCTCCCAGACCTGTTCGTGCTGTCTTTCCTATTGTCATGTGACAATGTTCCCTCCactttgatttgttcaataaattCTATTGTCAGTTGCTTTAGCCACCTCCCCGTTCTGATTACCAGTTCAGCCATCCCATCCCCTTAGCCTTTATTCTGTTTGTATTACACAAACAGTCATTTAACAGATGCTATTGTCCAGAGCGActaacaggagcaattagggttaagtgccttgctcaagggcacagacagatttttcgcctagttggctctgggatttgaaccagctaactttcggttactggtgCAACACTCTTAACCTCGAGgctggctacctgccacccaaggGCACGCCCAAGGGCGTTCCTTTACCTCTCTTCATTTGCCCAAAGAACTGTATAATGTACTGTAAATGCCTCCCTTTTCCCTTGATACCTAATCAGCTCACGCATGTGCCAATAAAAGGGGTTTGTTTGTACAGGAAAGCTTTTGATGCCAAATCAGTGACTGAAATATGATTGCAGCATTTTGTGGGACTGATTTTGGTTATTTCGCTTGCATTGTAAGTTTCTCAGCTGTATAATTTAAAGACTAATGCAAGAATTGCCTGTAAATATTAAGTTTAATTTATGTGTGCAGACTTGACATTTGTGGGCATTTGAGAATGCCTACCCTACATTTTGCTGTTGGAAATGCATAGTAGGACGAAATGTGAGAAAAGAATGCTCTGCAAATTATGCTTTGTTTCAAAAGACCGTTTTACTCAATGCTGGCATTTTTTCATTGACATCTGTGAAATTGAAATAAAATGTCAAAACTA

Function

NR:

description
V-type proton ATPase subunit S1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988641.1 True 2280 mRNA 0.47 10 63719206 63724971
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110532613 LOC106572632 coding downstream 521992 63121692 ~ 63197214 (-)
LOC110532610 LOC106572636 coding downstream 717470 62997657 ~ 63001736 (-)
LOC101268951 tnfrsf5b coding downstream 902089 62810887 ~ 62817117 (-)
LOC110532600 LOC106572567 coding downstream 1104315 62607951 ~ 62614891 (-)
LOC118966087 NA coding downstream 1167524 62528929 ~ 62551682 (-)
LOC110532626 LOC106572619 coding upstream 11799 63733028 ~ 63767705 (-)
LOC110532627 LOC100194719 coding upstream 42864 63767835 ~ 63791338 (-)
LOC110532630 LOC106572617 coding upstream 74574 63799545 ~ 63810713 (-)
LOC110532632 LOC106572615 coding upstream 139033 63862848 ~ 63899379 (-)
LOC110532633 LOC106572613 coding upstream 177077 63902048 ~ 63906187 (-)
G830203 NA non-coding downstream 20134 63585822 ~ 63699072 (-)
G830127 NA non-coding downstream 139668 63478589 ~ 63579538 (-)
G830115 NA non-coding downstream 253579 63465265 ~ 63465627 (-)
G830113 NA non-coding downstream 261093 63457827 ~ 63458113 (-)
G830108 NA non-coding downstream 266173 63450267 ~ 63453033 (-)
G830321 NA non-coding upstream 65003 63789974 ~ 63790227 (-)
G830297 NA non-coding upstream 71615 63796586 ~ 63797229 (-)
G830324 NA non-coding upstream 77879 63802850 ~ 63803501 (-)
G830596 NA non-coding upstream 229892 63954863 ~ 63955291 (-)
G829644 NA other downstream 926710 62790588 ~ 62792496 (-)
tmem269 pss other downstream 2001241 61683104 ~ 61717981 (-)
G827668 NA other downstream 2646841 61028372 ~ 61072365 (-)
LOC110532567 LOC106572513 other downstream 3443465 60227530 ~ 60275772 (-)
G825961 NA other downstream 4080312 59638346 ~ 59638894 (-)
G830543 LOC108255233 other upstream 302936 64027907 ~ 64041211 (-)
LOC110532670 hoxc8ab other upstream 986701 64710256 ~ 64713744 (-)
G831986 NA other upstream 1645882 65370853 ~ 65413071 (-)
G832008 NA other upstream 1689524 65414495 ~ 65418096 (-)

Expression

LOC110532624(LOC106572621) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

LOC110532624(LOC106572621) Expression in each Bioproject

Bar chart with 21 bars.
LOC110532624(LOC106572621) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network