LOC110532629 (LOC106572620)


Basic Information

Item Value
gene id LOC110532629
gene name LOC106572620
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63729172 ~ 63737016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616696.2
CGAATGCATCATTGCTGTTCCACAGCGTTCCATGGTTAGGGCCATCTTTGGTCGTTCTTGCCGGTGACAGTGTGTGGACCATATTCCACTTACAAATTACAACTGATTATAAATAAATACTAACTTAAAAAGGTATCTAACCAACATACACTTGCTAAAAAGAAACGGGGACAAATTGCGTCCGTTCTTCCACTTGGTTTCCTTTCCTGCCAATTCCCTGAAATTTCACTAGGCAAAAGAGGGCGAGACAGGAGAGGCGGTGATACAACATGGATGAGGAATATGATGTGATCGTTTTGGGCACCGGACTCACGGAATGCATCCTCTCTGGGATCATGTCTGTGAATGGAAAGAAAGTTCTGCACATGGACAGGAACCCCTACTATGGAGGTGAAAGCTCCTCCATCACCCCTCTGGAAGAGCTGTATAAGCGGTTTGAGCTGCCTGACAGCCCTCCAGAGTCTATGGGTCGTGGAAGAGACTGGAACGTGGACCTCATCCCCAAATTTCTTATGGCCAATGGTCAGCTTGTGAAAATGCTGCTATACACAGAAGTGACACGATACCTGGACTTCAAAGTAGTGGAGGGTAGTTTTGTGTACAAGGGAGGAAAGATCTACAAGGTTCCTTCAACTGAGACTGAGGCTCTAGCTTCAAATCTTATGGGTATGTTTGAGAAGAGAAGGTTCCGGAAATTCCTCGTGTTTGTGGCCAACTTTGACGAGAACGACCCTAAGACCTTCGAGGGCGTCGACCCCAAAGTTACCACCATGAGAGATGTGTACAAGAAGTTTGACCTGGGTCAGGATGTCATCGACTTCACTGGCCACGCCCTGGCCCTCTACAGGACAGACGACTACCTTGATGTGCCCTGTTTGGAGACCATCAATCGTATCAAGCTGTACAGTGAATCCCTGGCCCGATATGGGAAAAGCCCCTACCTGTACCCCCTCTATGGCCTGGGGGAGCTGCCTCAAGGATTTGCCAGATTGAGTGCAATTTATGGAGGAACCTACATGCTCAACAAACCAGTGGAGGAGATAGTGATGGAGGATGGCCATGTGGTGGGAGTGAAGTCTGAGGGAGAGGTGGCTCGGTGCAAACAGCTGATCTGTGACCCCAGCTACATCCAGGACCGTGTGCGTAAGGCAGGTCAGGTGATCAGGGTCATCTGTATCCTCAGCCACCCGATCAAGGATACCAACGACGCCAACTCCTGTCAGATCATCATCCCCCAGAACCAGGTCAACCGCAAGTCAGACATCTACGTGTGTATGATCTCCTATGCCCACAATGTGGCGGCCCAGGGGAAGTACATTGCCATTGTCAGCACCACTGTGGAGACCAACGAGCCTGAGGCTGAGATAGAGCCTGCTCTGGAGCTGCTGGAACCCATTGACCAGAAGTTTGTGTCCCTCAGTGACCTCTATGAGCCCACAGACGACGGTACTGAGAGTCAGATATTTGCCTCATCGGCCTACGACGCCACCACTCACTTCGAGACCACCTGCAACGACATCAAGGACATCTACAAGCGTATGACCGGAAGCGACTTTGACTTTGAGAACATGAAACGCAAACAGAACGATGTGTTTGGGGAGGATGAGCAATGAGGAGGGAGGGGCATCAGGGAGAGGGCGGGGCAGAGAAGGGAGTGAAGAGGGGGTTAATGGAAGAAGGCAGAATATATGGATGAGGTGGTAGAGGGCAGGGTAAAGAGTACAAAGGGTAACGAGTTAGATCATTTACAGATTGTAggggcagggtactgggtaggGTACCTTATATGGGAGATGGTGGGAGTGTTCAGGGGAGTTCTAGAAGGTTCTAGAGTAGACAGGGAGGTTCTGCCTTCCAGTTGTCCTCCTTTTTTCCCCCTCCTGAGGTCTCCGTACTCAAACataattaaaacacacacacagcacattgTTCCAAGACTCACATTCCCTATTTCTATCTCTCACTGAAAGGCAAGGTTGATATGGTCTCTCATTCCATTTTAAACTACGTCTAAACTATGATCATTAGAGGTAGACCGATTCATTGTAGTTGCAATTTCAAAAGCCTTTTCACTTTTCGACATGCATGAATACACAGTAGTATTGCACATAGAACACGATGATGCGGCAGCGTTCTGAAGGCTGGGCCATTCTTACACTGATCATTCCCTCCTGTCAACCCTGCTTTCACCCTGTTCTCTTCCTACTATTTAACCTGTTACTTATTTACATAGACAACTGCTCTTTTTTCGGCAAATCTCTCGCTCGGTCagacaaaatgttttaaaatgaaaagtTATAATATCAATAGGCTGTTCTGTCAAACTGATAGTGCTCACTTTGCAGTGCTGCTGTGTTCTCTGTGCTAGTAGTTAAGCTAACCGGTGGCTAACTGTTCTGTTGTCCCTAAAACCACGTTTTATTTCTCTGTTTGTTGTGTGATGTCAAAGTTACAATTTGAATGGTTTCCGTTCTTTATTTTTGAAATGTTTAGAGTTTTTATTTCAACATTTGGTGCGCATTTTCACTTGCTGAAGTTATGAAGTTTACTGAATTTGAAATAGAAACATGGACTGTAATACTCTGAAGTGGACTTTGAGGTCAAACTgaaaagggaatgtgttgtgtagaagagtgagagagggtctgTCTGGAGGCTAGGCATGTTGGTGAGGTTACATGAATACATTTTTCATGAAATGAGAAAGTCTAAACAGTGTCCTTGGGATAACCGAACTGATGTCACTCCATTGAAGTtgaaaatggttaaggtaagggtcaaggttaggattaggtaagggttatggttaaggttaggtttagggtagggacatcccaaggatagCACTGAGTTGTACTCAAATAGGAAATCAGATCACTACATGTTGAGATACGATGAAGCAAGGTGATAAAAAACGAATGTAGTAAGGGACTGTCGCAGATTTGAGATCAGGAAAGTATTGCTTTTGTGTAAAAGAAGGAAGACTGAACTCTCGGCTTGTAGTGAAAGGAAGCTCCAGATCATTGTTGTGGTCTAACTAACCCTTGTTGTGTAtgtcacacagagagacaaattcCCTTTGGACTCCTGCTAGGCAACCTTACAGTAGCAAGTGGAGGGAAACGCGGACACTCCCAAAATGTAAAACACTTAACAGAATGCACCATTACAAAAGGTTCTGAGGCCTCGATATGAAGTGCCTCCCCAGAGTATGAACCAATTGCTTTTACTTGGTTTTAGCCTTAAATTTGGGGTCTTATCCAATATGTTTGGGTTCTTAAATAATttcagtatatttaaaaacaatgttATCTGCCGATCATTCCTCTGCTTATTGATGTCAGTTGGTTGACTTGATGCTGCAAATGTCTGGTGTCTTTCATGACTGCTAACTGTGAACATTGTATTTCCACTAACTACCACCACAGTCTAATATAACAGCGATAGAATCTCAGaaattctagtcattctatttctatgttctaGTAAATCCTGGGGTTCTGTGGACTTGGCTGGGCCCTAATGTGAATCTCCTGCATTGTAGAAACCCTTAACCTCCATTCCGTCTGACCCTTTGATGTTAGCTGTATTCTCTTCATCTATATGTTTCCAGGCATGACATTGTTTTGAGATTTGGATCTGCAGCTTGGTTAGTTATTTACAGTACATGTCAATTGTGGGCAGCAATGCTGAGATAGATGCCACAACATTTCCCTTCAAATTCGATTACAGTAACATGGATGACGTTAGTGGGAATTATTGCCGATCCCTTCATGTAGTCCCTCATATCTCTAAACGCCTCAGTTTTTACGTATTTGGGGTGGCTCTGTGTGTCTTAGTACAATGCTAATTTATTTGATTTCACTGACGTTATGGTGATGGAAGGTAATGCTGAATATGCTTCTCTGCTATTAGTTTGTTATATTATCATAACTGATCTCAAAGTGATGCATATGCCGACTTCATTGTTTTAGTTTTGTTGTATCATGTTTGACCTGATTTACTGGTTATTACAGTTTTACATGGGTTAAACATTAACAGGTCTTATAACAGGTTGTGATGAAGGACAGTGGGACGATAGCAACAGTCTGGTCCTCAATCACAGGGTTCAATCAAGCTTTCAACCCTTCAGTCCAGTCATCTTTTAGACTCATTTCTACAGTTTCAGACTGTGCACAGTTTTCACATTGTGTGAAATTGTGTGAATTTCATACTGGAATTATGTTACCTTGGTGAATTGTGTTGAGTTTACTCTGCAAGCGTAGCTAGTTATATTTGGGCATTTTTCCCCTTCCTCGACACCAGACGCTGTCttctctttatttatttaaatgaaaGCCTAAAATGTGGTTTGATGTATTCATTTAAGAGTTTTGGCCTTTGACTAATATTATTGATGACATCCCTTGAAATTGCCGAAAACATGGGGCAGACGGAGAAGTAAACAACTTACAGTCCTTTGTTTGATCACTAGTATGTGAACAATGTCTTGTGTAACAAATAAAATGAATTAAACTATGAACAAAAGTATAGAAAAAATAATTAAAAGCACATGGCAAACCTGAAAAGT

Function

NR:

description
rab GDP dissociation inhibitor alpha-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616696.2 True 4570 mRNA 0.43 11 63729172 63737016

Neighbor

gene id symbol gene type direction distance location
LOC110532625 LOC106572622 coding upstream 12897 63710544 ~ 63716275 (+)
g0s2 LOC106572624 coding upstream 19481 63708644 ~ 63709691 (+)
LOC110532622 LOC106572625 coding upstream 33840 63648764 ~ 63695332 (+)
LOC110532620 LOC106572626 coding upstream 81492 63606567 ~ 63647680 (+)
LOC110532619 LOC106572645 coding upstream 127202 63565578 ~ 63601970 (+)
LOC110532631 ada coding downstream 108255 63845271 ~ 63863413 (+)
LOC110532638 LOC106572608 coding downstream 230156 63967172 ~ 63971893 (+)
jph2 LOC106572606 coding downstream 256140 63993156 ~ 64022233 (+)
LOC110532642 LOC105013598 coding downstream 301559 64038575 ~ 64041225 (+)
LOC110532647 LOC106572599 coding downstream 351667 64088683 ~ 64094297 (+)
G829351 NA non-coding upstream 271382 63457546 ~ 63457790 (+)
G829347 NA non-coding upstream 275132 63453832 ~ 63454040 (+)
G829288 NA non-coding upstream 315418 63319983 ~ 63413754 (+)
G829267 NA non-coding upstream 435542 63293423 ~ 63293630 (+)
G829261 NA non-coding upstream 451080 63277892 ~ 63278092 (+)
G829530 LOC100194719 non-coding downstream 32101 63769117 ~ 63771336 (+)
G829539 NA non-coding downstream 52949 63789965 ~ 63790241 (+)
G829540 NA non-coding downstream 53405 63790421 ~ 63790709 (+)
G829541 NA non-coding downstream 53772 63790788 ~ 63791419 (+)
G829543 NA non-coding downstream 55756 63792772 ~ 63792985 (+)
LOC110532602 NA other upstream 1101330 62623239 ~ 62627845 (+)
G828274 NA other upstream 1538566 62189182 ~ 62190606 (+)
G827039 NA other upstream 2477934 61212461 ~ 61251238 (+)
G826751 NA other upstream 3067266 60661369 ~ 60661906 (+)
G830755 gp182 other downstream 577062 64314078 ~ 64316656 (+)
G830923 NA other downstream 928732 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 1142691 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1629275 65186569 ~ 65405501 (+)
G831810 NA other downstream 1777377 65514393 ~ 65514985 (+)

Expression


Co-expression Network