LOC110532638 (LOC106572608)


Basic Information

Item Value
gene id LOC110532638
gene name LOC106572608
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63967172 ~ 63971893 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616712.2
AGAGAGGGCTGATATACCTACCAATCCCCAGATCATTCTTGTTCCAAGTGTCCGCATTTCAGCATGGCAGCCGTGGATGTCATCGTGGACAACTTTGCTGCACTTTGGAGTAAACCTTTTAACCGTGTTATATTGGCTCAGATTTTTTTTGCTATTTCAATAGTGGGATCCTTTGTAAATTGGACACAGCTCGTTCCGGAGACATATTTCAGCAACAGAAGAAATGTTGTTAATATGTATTTTGTCAAAGTTTCCTGGGGCTGGTCTTTGCTGCTGTTGACCCCGTTCATCCTCTTCACGTCATACAAGAACTTGACCTTTGCCCTCCGGCGACTGAGCTCATTGGTGGTGGCCACAGCCATTTGGTACACCATCACCAAGTTTTTTTCCTACATCAACAATGCCACAGGTACCTGTCACGTTCCTGAATCTGAAGCCATGGATCAAGTCCCTCATGATGACATCACCTCATGCAGGAATGCTGGGGGTCAATGGGACGGCTTTGCCATCTCAGGACACTCGTTCATTCTGTCGTACTCTGCACTCATCATTGCCGAAGAAATGGCACCTATGGTGCACCTGGTGAAGAAGAACAGGAATACTGTTTTGGATTTGTTATATGTTTCCCTTAATTGGATAGTAATCACCTGGATATGGATGTTTGTGTGTACCTCGGTGTACTTTCATTCTTTCCCTGAGAAGCTTCTCGGGACAGTTTTGGGGATTGTGCCATGGTTTGTCACATATCGGATATGGTATTCAATGTCCTTCTCTCCTGGTATCCCATATCAGCCAAAAGAGCAGAGACAACTAGCTTAAAACCAGCACTACTTAGCACTAGGCTAGACCTCCTACTCTCCTAATGTATTGGCTCTGTAACATGTTTGACTGCCACCTTCAAAACACTCACGTTAAAAACATTGACATTCTTCTCACGTTCCAAGTTGACTGTTGCTATTTAAAGTTTTTTTTCTGTCCTTCAGAAAGGTCATTGGACAGGGGGCCAGGGTTGGTTTGCACACGCGGGTCTCGACTCCCTGTGTGGCTGTAGGCATCTGGTGTTCTTAAAATGACACTGATCTCATCTGAGATCAGTGCAGTGCATGGCGTTGATGCCTAGGCCTATCCACTAGCTAGTCGTccccagggttggggtcaatttcatTTCAATTTAAGCAGTAAACTGACTTTTTTTTAAGATAAAGGTGTGCACCCCAACGTAAAAAGAAATGAATTCACCACAACTCTGGGGGTCGTGCTATTTGTTTTGTATACTTCATCTTTTAAAAGCCAATGTTGTTGTGAAAGCCTTTGCAGTATGTGTATGTAGGGTTGGAGAGTCATTTTAGTGTTAGTTCATTTTCAGTTTGTTTCAATTctcattattttatttgtatgGAAATGTATATTGGAGAGAAATATATCAAGTAATCAATTTTAGTGGCAAATGTAGTGGGGAACACTTGAGAATGTTTACAATTAAATAGTTTAAGGTATTTTTAATGTTTTTGTGCTTTGCCAACTCATTTTTTTGTAACACAACCCTCCAAATAGAAATTAGATCTGTTCTTATGTGGTTGtgccacctagctatcttaagatgaatgtactaactgtaagtcgctctggataagatgctaaatgactaaaatgtaaatgccaAATGTCTTGAATGTCCAGCAGCTCTCAATCAACATTGTGTTTTAGTCATAAGGTTTACATAGCCAGACAAAATTATAtcctaaatgttttttattttttttacaaatcattAAGGACAACATGCAATTATTTCCAGAACCAAAAGGTTCTATTCATATTATGGCTACTACTAGCTGTAGGCCTATCTGTTTATTCTCAGCACTACCAAGGGAATATTCAGCATGATGTGCAAGTAAAATAAAAGGTATTTTTAGTAGGTTGCCTGACAGTGCATTATAACACTTCATAACCAGGAGAATTGTCTGTTTTGCTTGGCATTGTGAAAAGCCATATAGTACAAAATAAGAGAAAATGCATTACATTCAATCATGTTGAAATAACAATTCTGTAAACTGCAAGTTATGTTTTTCATTTTCAGAATTTATTTTTCCTTGATGACAATTGAATAAATTAAGGCTTATGAACA

Function

NR:

description
fat storage-inducing transmembrane protein 2-like

GO:

id name namespace
GO:0022604 regulation of cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0019915 lipid storage biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616712.2 True 2128 mRNA 0.39 2 63967172 63971893

Neighbor

gene id symbol gene type direction distance location
LOC110532631 ada coding upstream 103759 63845271 ~ 63863413 (+)
LOC110532629 LOC106572620 coding upstream 230156 63729172 ~ 63737016 (+)
LOC110532625 LOC106572622 coding upstream 250897 63710544 ~ 63716275 (+)
g0s2 LOC106572624 coding upstream 257481 63708644 ~ 63709691 (+)
LOC110532622 LOC106572625 coding upstream 271840 63648764 ~ 63695332 (+)
jph2 LOC106572606 coding downstream 21263 63993156 ~ 64022233 (+)
LOC110532642 LOC105013598 coding downstream 66682 64038575 ~ 64041225 (+)
LOC110532647 LOC106572599 coding downstream 116790 64088683 ~ 64094297 (+)
LOC110532646 LOC106572598 coding downstream 127750 64099643 ~ 64110913 (+)
LOC110532648 LOC106572596 coding downstream 162795 64134688 ~ 64166582 (+)
G830430 NA non-coding upstream 3490 63963435 ~ 63963682 (+)
G830428 NA non-coding upstream 8344 63958487 ~ 63958828 (+)
G830423 NA non-coding upstream 17126 63949772 ~ 63950046 (+)
G830422 NA non-coding upstream 17512 63949335 ~ 63949660 (+)
G830405 NA non-coding upstream 26089 63936547 ~ 63941083 (+)
G830445 NA non-coding downstream 20733 63992626 ~ 63992844 (+)
G830408 LOC106572604 non-coding downstream 52709 64024602 ~ 64032351 (+)
G830458 NA non-coding downstream 78928 64050821 ~ 64062498 (+)
G830471 NA non-coding downstream 115169 64087062 ~ 64087298 (+)
LOC110532619 LOC106572645 other upstream 369404 63565578 ~ 63601970 (+)
LOC110532602 NA other upstream 1339330 62623239 ~ 62627845 (+)
G828274 NA other upstream 1776566 62189182 ~ 62190606 (+)
G827039 NA other upstream 2715934 61212461 ~ 61251238 (+)
G826751 NA other upstream 3305266 60661369 ~ 60661906 (+)
G830755 gp182 other downstream 342185 64314078 ~ 64316656 (+)
G830923 NA other downstream 693855 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 907814 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1394398 65186569 ~ 65405501 (+)
G831810 NA other downstream 1542500 65514393 ~ 65514985 (+)

Expression


Co-expression Network