jph2 (LOC106572606)


Basic Information

Item Value
gene id jph2
gene name LOC106572606
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63993156 ~ 64022233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616713.2
ATTTCCAATAGCGCCAACTGTTTGGTGATAGCAGCGCCAGTGAGGGGAGGCAGGGACAGGGGCAAGGGGCTTTTCTATGGCCACCTTGGAAAGCCATGCAAGATCCCTGGCTCAACCAGAAAAAGAAGACATCCAAAAACTGTTCAACTAAATAATCGCATATTAGTAGGAAAAACAACCGTAACAATTTTTACTCAGTCAGCACAGAGCCTTTATGAAGTTCATGACTCTGAAATCGAACAGCGATCAATAGAAGAAGAGTACTGAAATAATCAAAAGGAATAAGAGATAATTAAGTAGACTAAAATGCGCGTCTGAAACAAATTGATTTGAAGTGTCTATAGAGTGCAAGGCTACATGGAAAATACCCCAAAAATATTCAAGAACAATACAAAGAACATATTCTAAGCACAGTGCCAAGGATCTCTTAAATCGTTTTTGATGACAGGTGAAGGCGGATCCATTCTGACAGAAAATATTTGATCTTtaccaacatttttaaaaagtcattGATTTGACTCCTCCTTTAAaactacattttttttgtctGCAGTCACAGAAGGGAAGgtatgagtggaggtcgttttgAATTTGATGATGGTGGAGCTTATTGTGGTGGTTGGGAAGGTGGCAAAGCCCATGGGCATGGGATCTGCACCGGACCTAAAGGACAGGGCGAGTTCTCCGGCTCCTGGAATTACGGGTTTGAGGTGGTTGGAGTCTACACCTGGCCAAGCGGAAACGCCTATGAAGGCTTCTGGTCGCAAGGGAAGCGCCATGGTCTTGGAGTTGAGACTAAAGGACATTGGGTTTACAAGGGAGAATGGACTCATGGCTTCAAGGGGAGATATGGCTTGAGGCTGAGTGTTGGTAGTGGGGCGAAGTATGAAGGAACGTGGAATAACGGATTGCAAGATGGATATGGCACAGAGACCTATGCTGATGGTGGCACATTTCAGGGCCAATTTACTGGCGGCATGCGACACGGGTACGGAGTACGCCAGAGCGTGCCTTACGGCATGGCGGCGGTGGTTCGTTCCCCTCTCCGCACTTCCCTCACATCCCTCCGCAGTGAGCAAAGTAATGGCACCCTGCTTCAGCAGGACGTCCCCGTCATCATCGCCACCAACGCCGCCGGCCAGGAGGCCCGAGTCACCACACCCACCCAGCTGGGACCCTCCCGGGGTGGCTTCGCCCTCACGCTCCAGGTGGACCCAGACGCCGTCAAGCCCAAGAAGAAGGGCCTGTTCCGAAGGGGGTCTCTCCTGGGGAAACTGAAGAAGTCTGACTCCCGTACTTCCTTATCCAGCGTGAGGAGCAAGCTAAGCTTCCTGGGAGCGAGGAGCGAGTCAGCGTTGAGTTCAGCGGCCAGCGATGTGGCCAGCGATGCCAACTCCACCATCAGTCTGGGAGATGAGAGCCTAGCCGGGGCAGAGGATTTCCCCCCTGTGGAGGCCGACATCGATGCCACCACGACAGAGGTTTACATGGGTGAGTGGAAGAACGACAAGCGTTCAGGCTATGGAATAAGCGAACGTTCCAGTGGGCTAAAGTATGAAGGCGAATGGCTGGACAACCAGCGACACGGCTATGGATGCACTACCTTTgcggaaggagggaaggaggaaggaaagtATATGAACAACATGCTGGTGAAGGCCATGAAGAAGAGGGTTATCCAACTGAAGGGCAGCAAGATCAGGCAGAAAGTGGAGCGCAGTGTGGAGGGTGCTCAGCGGGCGGCAGCCATCGCCAAACAGAAAGCAGAGATCGCTGCCTCCAGGACGACCCATGCTAAGGCCAAGTCAGATGCTGCCGATCAGGCTTCCCAGGCCTCCAACCAGGAGTCCAGCGTCGCCAGGGTGGTGGCCAGGGAACTGTCCCCTTCCTTCTATCAGCCAGGCCCAGAGTACATGAAAAAGAGAGCATTACAGGAGATCTCAGAGGCCAATGAGCACACAGACCCTATAATGCATGAGCAACTGTTAGCAGAGCAGCCACTGACACCTGCTGAAAGCCCAATGCTGCACGACAGGCCTGGCTCCACTCCAGCCTGCACACCCTCCCCCAGCCCAGCCATCACCCCTCCAGCATCCAGGCACTCCAAACAGGGCAGCATCAGCAAAGAGGACTCCCATCTACTCGGCCCTGCTGGCTGGAACGGGGACAGAGGTGGTGGAAGTCGGGGGAGCAGCCGTCCCAACAGCAGAACCAACAGCCGACCCACCACCCCCTCGTCCAATGTGGCCACCACCACTGCTCCCCCTGAAGATTGCCCCACTTCTGCCCCCATCCTTAGCAGCCGGGGGAACTCCCGCGCCTCCAGCCGCCTGAGCAACAAGATAGAGCAGGGCTCTGACCTGGAGATCAAGCCCCTGGAGAAGACGGCCTCTGAGGCTAAATTGTCCAACGCTACTCCCTTGGTAAGGACCAGTGTCACCTACTCAGAAGAAGAAGTCCCACCCCCTCATCCCGCCTCCAAAGAGTCTTCCAAAGCTGCCGTCACCCCCGAGCTGAATGAGGCAGAGCCCACACAAAGAACAGAGTCGGTCAATGAACGACCAGTATCCGCTGTATCTGAGAGCAAACCAGGGTCCAGCGCTCAGTCTGTTAATAAAGTGTCACCCAAGCCATCGCTGTCACCCAAGCCATCGCCAAAACGAGAGGCCAGTCCGGCTTCAAAACCTGCCACACCTGCACCCAAACAAGCACCTAAGGTTGAACCCAAAGCGGAGGCCAAGCTGATGAAGAACATGGTAAAGAGCCCAGGTACAAGTGAAGTTACAGAGCTAGATGAATTTGAGCAGggtCCGAACACCATCGTGATAACCATGGTGATTCTGCTCAACATTGGCCTGGCCATTCTCTTCGTACACATCCTGTCATGAAACTCTGTCGACCCAGGTCACCATCTTGCATTGGTGTTGAGATAAGATTGCCCACATTTTTAAGCAAGGATCATCCAGAACAAAGAGACTACCAAGAAATTCAAGCCTTATATGGAAGGAAACTGACAACAGCTTCTCCACACACAGCCTCTTGTGACTGTGTTGAGGCTCTTTAAGACCAAACTGATTTTCAGAGTCTTGGAATATCTGGAGCCGAATTGAAGGACTTATGAATCCTTATGAATCAAGACTGAAGGACATCAATGAATCTGAATGTCAGGAAGAGGGTCTGAATGGACACGGTGCTTGTAGAGGGATCCACTGGTGAGTTTCAGTATCTACACTGGAGATGTTGTTGCATGTTATACACAAGTTAAGTCTACGCTCAACGGCTTAACACCGACAGATTGGAGTGGTTGTTGACTGGACAGGTGAGGTTGTGTTCACACAgttagcccaattctgatattttttcctctaactggtcttttgaccaatcaaatcagatcttttcacattagattttttttttagagatgatctgattggtcaaaagaccaattagtggaaaaaaaaatatcagatttGGGCTGTCTGTCTAAACGTAGCCTAAGTGTCATTAAATAATTAGTTATGTAATTAGATATTCATTTAACTGATAGCTTGCCTATAGAAATGTAGTCTCTTGGAAAATCTCAAATAAACtgaatatccatcactaatttgTTCCTTGAAATTTAGTTTGATAGATCAGGTTTTCCCAAACACTGTCCTCTGGATcccaaggggtgcatgttttggtttttgtcctagcactacacagctgtttcaaataatcaactaatcctcatttgaatcagctgtatagtgTTAGGGCATAAAACCAAAACTTGCAATACTCAGTGTTGCAATTGATATATTATGCCACCATTAGATTATCTGTTTTCTTTGTTTGGCATATTCTCAGCTTTCTTCAGTAGACATCAGTAAAGAGATCTCACATTCTCTTTGACATCACAGGGCTCTTGTAAGACATGAACTACAGAATATAGATTCGACAATGTCTGAGAATCAGTGATTCTTTTAACCACAATGGCAACACAACCCACCACAGCAGTGCAATCAGTCATGTACGGTTTTGTTTTCACATCCAATATTCGCTTTCCAAGGCAAATGTTTGAGTGAGTCACACTGGACTTGTGTTTAAAACAATATCTGTAACGGGAGTGGTACTGCACTAATAAAAGGCGTTGTATAATTCAGTAAGAGGTTTTCAAATGACAGAGAATAGAGGATACATTTTAGGACTTTAACCAGTGTGTGTGGTATTGAATTTCTGGTGTAATGTCTACTGTATGTAAACTGTCTTATGTTTGTCTGATCAAAAGTAAGGTAAAGCACCCTATTTTAGGGTTTGACTTCAATAAAAGCATGACTCAATGGAGTCACAGTGACAaatgtgggtgggtggggggtcaATTCTGTCAAAACAATTGGGGAACACTTTGTAAAGATTTTGAGAGGGTAATTATTTGAACAAATGGGTTTGCTTTGTTAGAATGTAATTGTGAGCAGTTGTTTAGGGATTTTGTTGGTCTGTATGTTTGAGTAGGTCACACTATTTAAAATGCATTTCATTCAGAACAAACAGCTTGCGCTTCAAAATCAATTAAGCAGATTTTCCTCCCAACTTTTGTAAGCATCTgggcactgtttgtttgtgtgtgtgtttttgtaccTTTTTTGAAGTACACATATTTTAATCTACGAAA
>TU944189
aaaaaaaatatcagatttGGGCTGTCTGTCTAAACGTAGCCTAAGTGTCATTAAATAATTAGTTATGTAATTAGATATTCATTTAACTGATAGCTTGCCTATAGAAATGTAGTCTCTTGGAAAATCTCAAATAAACtgaatatccatcactaatttgTTCCTTGAAATTTAGTTTGATAGATCAGGTTTTCCCAAACACTGTCCTCTGGATcccaaggggtgcatgttttggtttttgtcctagcactacacagctgtttcaaataatcaactaatcctcatttgaatcagctgtatagtgTTAGGGCATAAAACCAAAACTTGCAATACTCAGTGTTGCAATTGATATATTATGCCACCATTAGATTATCTGTTTTCTTTGTTTGGCATATTCTCAGCTTTCTTCAGTAGACATCAGTAAAGAGATCTCACATTCTCTTTGACATCACAGGGCTCTTGTAAGACATGAACTACAGAATATAGATTCGACAATGTCTGAGAATCAGTGATTCTTTTAACCACAATGGCAACACAACCCACCACAGCAGTGCAATCAGTCATGTACGGTTTTGTTTTCACATCCAATATTCGCTTTCCAAGGCAAATGTTTGAGTGAGTCACACTGGACTTGTGTTTAAAACAATATCTGTAACGGGAGTGGTACTGCACTAATAAAAGGCGTTGTATAATTCAGTAAGAGGTTTTCAAATGACAGAGAATAGAGGATACATTTTAGGACTTTAACCAGTGTGTGTGGTATTGAATTTCTGGTGTAATGTCTACTGTATGTAAACTGTCTTATGTTTGTCTGATCAAAAGTAAGGTAAAGCACCCTATTTTAGGGTTTGACTTCAATAAAAGCATGACTCAATGGAGTCACAGTGACAaatgtgggtgggtggggggtcaATTCTGTCAAAACAATTGGGGAACACTTTGTAAAGATTTTGAGAGGGTAATTATTTGAACAAATGGGTTTGCTTTGTTAGAATGTAATTGTGAGCAGTTGTTTAGGGATTTTGTTGGTCTGTATGTTTGAGTAGGTCACACTATTTAAAATGCATTTCATTCAGAACAAACAGCTTGCGCTTCAAAATCAATTAAGCAGATTTTCCTCCCAACTTTTGTAAGCATCTgggcactgtttgtttgtgtgtgtgtttttgtaccTTTTTTGAAGTACACATATTTT

Function

NR:

description
PREDICTED: junctophilin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616713.2 False 4660 mRNA 0.47 6 63993156 64022233
TU944189 True 1192 lncRNA 0.36 1 64021031 64022222

Neighbor

gene id symbol gene type direction distance location
LOC110532638 LOC106572608 coding upstream 21263 63967172 ~ 63971893 (+)
LOC110532631 ada coding upstream 129743 63845271 ~ 63863413 (+)
LOC110532629 LOC106572620 coding upstream 256140 63729172 ~ 63737016 (+)
LOC110532625 LOC106572622 coding upstream 276881 63710544 ~ 63716275 (+)
g0s2 LOC106572624 coding upstream 283465 63708644 ~ 63709691 (+)
LOC110532642 LOC105013598 coding downstream 16342 64038575 ~ 64041225 (+)
LOC110532647 LOC106572599 coding downstream 66450 64088683 ~ 64094297 (+)
LOC110532646 LOC106572598 coding downstream 77410 64099643 ~ 64110913 (+)
LOC110532648 LOC106572596 coding downstream 112455 64134688 ~ 64166582 (+)
LOC110532654 LOC106572591 coding downstream 258339 64280572 ~ 64308563 (+)
G830445 NA non-coding upstream 312 63992626 ~ 63992844 (+)
G830430 NA non-coding upstream 29474 63963435 ~ 63963682 (+)
G830428 NA non-coding upstream 34328 63958487 ~ 63958828 (+)
G830423 NA non-coding upstream 43110 63949772 ~ 63950046 (+)
G830422 NA non-coding upstream 43496 63949335 ~ 63949660 (+)
G830408 LOC106572604 non-coding downstream 2369 64024602 ~ 64032351 (+)
G830458 NA non-coding downstream 28588 64050821 ~ 64062498 (+)
G830471 NA non-coding downstream 64829 64087062 ~ 64087298 (+)
G830490 NA non-coding downstream 90313 64112546 ~ 64112988 (+)
G830492 yo84 non-coding downstream 93041 64115274 ~ 64115597 (+)
LOC110532619 LOC106572645 other upstream 395388 63565578 ~ 63601970 (+)
LOC110532602 NA other upstream 1365314 62623239 ~ 62627845 (+)
G828274 NA other upstream 1802550 62189182 ~ 62190606 (+)
G827039 NA other upstream 2741918 61212461 ~ 61251238 (+)
G826751 NA other upstream 3331250 60661369 ~ 60661906 (+)
G830755 gp182 other downstream 291845 64314078 ~ 64316656 (+)
G830923 NA other downstream 643515 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 857474 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 1344058 65186569 ~ 65405501 (+)
G831810 NA other downstream 1492160 65514393 ~ 65514985 (+)

Expression


Co-expression Network