LOC110532640 (LOC106572604)


Basic Information

Item Value
gene id LOC110532640
gene name LOC106572604
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64027016 ~ 64030807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616714.2
gcagatagcctagcggttaaattAGCGTTGGGCCACTAAGTGAAagattgctggtttgaatcctaaagctgactaggtgaaaaatgtatcattgtgcccttgagcaaggcacttaaccctagttgtTCCTTTAATTAagctgctctggataagagcaaataaaaaatatactgcAGTTACAATGTAGTAAAATCTTAATAATTTGGTGACAAATGAATTCTGAAATTGTAGTACTGCAGTTGaactgcaaaatcactggatacAGCATACTACAGTGAATAGGAATATTTTGGACATATAACTGCAGTTATACAGTGTTACTTCAACTTGCACAAGTAGGCTCTGAAGATGCTTACACTTATATCAGAGAAAAACCCTCATGCAGAGTTTCAACATGCCTATGAGATACTGTGTAGTATTCTACTCTGATAGCCAATTGGGACCAGGCATATCATAAGATCTTCCAATCAGTTTCGACAAAGCCTGTCTGTCCACTGTATCGTGGAACTATAAATGGCCCCACCCACCGAATTTGGTATCACACTGACTTCTTACAACAGACTCCTAAAGGTCTGCCTGTAAGTGTTGAACTAAAAGAAGATTCATTTTCTCCGCACCAAATCTTGAATCTTCTCAGCTTAAACATGCGTGAGTGCATCTCCGTCCACGTGGGTCAGGCTGGAGTCCAGATTGGAAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGGATCCAGCCGGACGGACAGATGCCCAGTGACAAAACCATTGGAGGAGGAGACGACTCCTTCAACACCTTCTTCAGTGAGACTGGGGCTGGAAAGCATGTCCCCAGGGCTGTGTTTGTGGACCTGGAGCCCACAGTTATTGATGAGGTGCGAACTGGGACCTATCGCCAGTTATTCCATCCTGAACAGCTCATCACTGGCAAAGAGGATGCTGCCAACAACTACGCTCGTGGACACTACACTATTGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAACTGgcTGACCAGTGCACAGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTTGGAGGTGGGACCGGCTCTGGTTTCACTTCCCTGCTGATGGAGCGCCTGTCTGTTGACTACGGCAAGAAGTCCAAGCTTGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTGGATAATGAGGCTATCTATGACATCTGCCGTAGGAACCTCGACATTGAGCGTCCTACTTACACCAACCTCAACAGGCTCATTAGCCAGATCGTTTCCTCCATCACTGCTTCCCTTCGATTTGATGGTGCCCTCAATGTTgatctgacagagttccagaccaACTTGGTGCCCTACCCCCGTATCCATTTCCCTCTGGCCACCTATGCCCCAGTTATTTCTGCAGAGAAGGCTTACCATGAGCAGTTAACTGTCTCTGAGATCACCAATGCCTGCTTTGAACCAGCCAACCAGATGGTGAAATGTGACCCTCGTCACGGAAAGTACATGTCATGCTGCCTTCTATACCGTGGTGACGTGGTACCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACTAAACGTTCCATTCAGTTTGTTGACTGGTGTCCAACTGGTTTCAAGATTGGCATCAACTATCAGCCTCCCACTGTGGTCCCTGGTGGAGACCTGGCCAAAGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTGTGGCAGAGGCCTGGGCTCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAACGTGCCTTTGTGCACTGGTATGTGGGTGAgggtatggaggagggagagtttGCTGAGGCCAGAGAGGACATGGCAGCCCTGGAGAAGGATTATGAAGAGGTGGGACGTGACAGCGGTGAAGGAGATGAGGACGGGGAAGAGTATTAGAAAtggctgtctttctttctctgtctttcaaaCTTTATCACCCTCTTCTTTCATTTCTCTTTTCCATATATCCACCTTTATCTTTTCATTTCTCTTTTCATAGATCCACATGTTCTATTATTTCCATCCACTACACTCCTAACCTCAGTCAAAAAGCACTTTAATTTTGACAAGAAATGTACATTGTATGGAAAACTACAATTTTACTTGTCGTAATTTTCAGGTTTCCCTTTAGAGGTGTTCATACCATTAGTTTATAATCCTCTCCCTTATGTGTATTCTTATATAGGTGGCTTAGACAAATTCATTGGTTTCTAGGAACACTGTTAACAGTCACAGAATTTCAAATAATgtttatcagtggaggctgctgaggggaggacagctcataata

Function

NR:

description
PREDICTED: tubulin alpha-1C chain

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616714.2 True 2388 mRNA 0.46 4 64027016 64030807

Neighbor

gene id symbol gene type direction distance location
LOC110532637 LOC106567092 coding downstream 35008 63971833 ~ 63992008 (-)
LOC110532636 LOC106572611 coding downstream 74714 63940053 ~ 63952302 (-)
LOC110532634 LOC106572609 coding downstream 105544 63913817 ~ 63921472 (-)
LOC110532633 LOC106572613 coding downstream 120829 63902048 ~ 63906187 (-)
LOC110532632 LOC106572615 coding downstream 127637 63862848 ~ 63899379 (-)
LOC110532641 LOC108255233 coding upstream 110 64030917 ~ 64032758 (-)
LOC110532643 LOC106572600 coding upstream 10421 64041228 ~ 64044665 (-)
LOC118966088 LOC106572600 coding upstream 21263 64052070 ~ 64056456 (-)
LOC118966089 LOC106572600 coding upstream 32729 64063536 ~ 64067922 (-)
LOC110532644 LOC106572597 coding upstream 44185 64074992 ~ 64081293 (-)
G830544 NA non-coding downstream 30 64024605 ~ 64026986 (-)
G830602 NA non-coding downstream 61709 63965043 ~ 63965307 (-)
G830601 NA non-coding downstream 62161 63964619 ~ 63964855 (-)
G830597 NA non-coding downstream 69619 63957140 ~ 63957397 (-)
G830596 NA non-coding downstream 71725 63954863 ~ 63955291 (-)
G830543 LOC108255233 non-coding upstream 7785 64027907 ~ 64041211 (-)
G830633 NA non-coding upstream 54143 64084950 ~ 64085180 (-)
G830637 NA non-coding upstream 57383 64088190 ~ 64088428 (-)
G830638 LOC106572599 non-coding upstream 57789 64088596 ~ 64094275 (-)
G830639 NA non-coding upstream 64283 64095090 ~ 64096490 (-)
G829644 NA other downstream 1234520 62790588 ~ 62792496 (-)
tmem269 pss other downstream 2309051 61683104 ~ 61717981 (-)
G827668 NA other downstream 2954651 61028372 ~ 61072365 (-)
LOC110532567 LOC106572513 other downstream 3751275 60227530 ~ 60275772 (-)
LOC110532670 hoxc8ab other upstream 680865 64710256 ~ 64713744 (-)
G831986 NA other upstream 1340046 65370853 ~ 65413071 (-)
G832008 NA other upstream 1383688 65414495 ~ 65418096 (-)
G832392 LOC106572669 other upstream 1745776 65776583 ~ 65781798 (-)
G832401 kmt2d other upstream 1763050 65793857 ~ 65795190 (-)

Expression

LOC110532640(LOC106572604) Expression in all Baseline Samples

Bar chart with 20 bars.
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The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110532640(LOC106572604) Expression in each Bioproject

Bar chart with 18 bars.
LOC110532640(LOC106572604) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network