LOC110532644 (LOC106572597)


Basic Information

Item Value
gene id LOC110532644
gene name LOC106572597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64074992 ~ 64081293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616717.2
GCCATGCTACAGAGGAGACCAGGCCTTGCACCACTCCAGAGGAGACCATGCCTGGATGGTCTGGCACCGCTGAAGGGTTTCCaagaacctgttttgaggatcTTCAAAGCCATCGAGGGACAAAGCATCCCAGACAGAGCTCAGCTGAAATCTGTCATCCTCGACCACTTAGGCTCCAAGCTTGTCAGGAAGCAACTGGCGGAGACAATCAGGGATGAGGTCAAACTGACGATTCCAGGGTCTACACCAGCGGCACAAAGGGCTCTGAGTGCCAGAATCGCTTACGATGTGTTGAAGTGCGTCTCTCGAGCGGCCAATCCTAGCAATGAACCTGCCTGCAGACTCCGTGGGGGAAACACAATCAAACCCAATGCTCAAGCAGATGATCCAGAACCAGAGGAGTGGATGGCCAACGGAGAAGACATAAATACCTATGTGACAACGTTGATCACTGACGTTCTGGAGGAAGTCCAGGAGCAGGTTATCGTAATGATCCGAGAAGACTCCCCTACCCAATTCAGAGTTGTCTCTGCAAAGGCCAGCCAAACAGCCATTGATGTGGTAAGCAATGTTTTGGAAGACATTAGACACTTATTAAATGAGGAAAACATTGAAAAGCTTGCACTAGACTGTGATGCTGAAGAAGGCACCTCAGGCATATCAAACAGTCAGCCACCTGCATTAAAAAAGGCAGACCCTGAGAACCGCCCAGATTCCTTTTCAAAACTAGAAGGTGTCGCCTGTGACCTTATTAGCACTGCATATGACAGCCTCCTATTTGAGCTGGCTTTTCCTGAGCTTCAGGTTGAAAGAGATGAACAACCAAGCAACTCAAGGGCTATCAGAAGTGACATACAAATCTCTTTTGAAGAAAAAGCTCCTTCCCTGACTCTGGAAATACTTCCCTCAGAGCCAGTGAACTCATCTTTATCCAACTCTCCCAGTTATGgaatgatgttttcatctgacaCTTCAGAGGTTGCAGAAAACAACAGTAAGACAAGCAGCTCAGTGGCCTCCGCAGCTGCATCAACCTCGCCCCAGGAGACGGATACCACAACCACTGTAGAATGCAAAGAAGAAAGAGTAGAGAATGGTAACACCAGTGAATCAGACAACGCCCTTTCTGTCCCCTCAGTCAATACTGAAGAAGTTGTTTCAAAGCCTACTCTCTTGCACAAGGTGAAGAGAGAAAATGCAGCCACCAGAAGCACTTCTCTTCCCAACCTGTATGGACTTGTTGTGGATGCAGTTATGGACCACTTCAGCACAGAACCCTTCAAAGACAGTCTGGCCCAATCAGTGAAGAATGAGGTGAGACGCACCCTTTCTATGCCTGACTGTGGATTGTTGAACACTCAAATTGATAATTACTTTGAGAGGAAAATGCTAGAGGATATGCTGAAGGAAGTATCCCGACAGTGCGGAGGAACAAGCTCTAGCACCATGGTGGAAGAGGCTACAGATGAAGAAGAGATCTACAGACTAGAATCTGCTGCAGCACAACTGATACAGAAAGTTTTCCAGGAGGTCAAGACACATTTTGTGTTCAAGATCAAGAAGGGTTCTCCCAAGAGATGTCTATCCCCAAAAGTAAGCCGAACAGCCATCAATGCTGTGAGCAGTCTTCTGGGTGACATGGAGACAACTGTGATGGCCAGTGTTCCATGTTCTTGTACTACCTCCAGAGCAGATATGGAAGGAATGCTCTCTGAGGCAACAGGCGAGCACCCAGCGAAATCAATGGCCTCTGCAAAAGTTGAGTTGATCGCTGATGATTTAGTGGAAGATGCCATCGATATGTGCAGTGAAATGATTTTAGACGACCAGCCACTAGCTCTACTACATGGCGATCCTGAAGAAGGTCCATCACATGTTGTTGTTCCTGGACCAATTCAGAGCAGCCTGTCTGGATGTGATGAATGCCACACAAAATCACAGGTCCCTGCAGTAAAGATTGAAGACCATGAGGTAAAGCCAATTTTGATTCAAGACACAGCGCTCATATCTCCAGGCGAGAAGAATATGGATGAAAAAAGAGTCATTAGAGTAAGTTATGTCTTTGACTCATCCCCTAGAAGGAAAGCTCACAAGGCCACCAGAAGCACCTCTTTCCCTAACCTCTATGTCACCCTTGTGGATGGAGTTCTGGACCAAATTAGCACAGAACCTTTCAAAGAAATACTGGCCCAATCTGTGAGGAATGAGGTAAGACGTTCTGTCTCTTTGCCTCAATTTGGATCGGTGAACCTCAAAAGTGAGGACTGCTCAGAGAAAGAAATGATTGAGGATATGTTGAAAAGTGTATCCAGAAAACTCAGTAAAGACCAGGCCTGTCAGCTGACCGGGAAAGCCAGTGAGACCATGAATGCCAATGTAGATGCCATTTCACTTACCCCCAAACTACAGTCTACTGCCAAAGACCTAATCATCAAAGTTCTGGAGCAGGTCAAGACTATAATAATCAATATGATTAGACAAGATTCTCCCAACAGGGCGATTTCCTCCAAGGCAAGCCAGACTGCCATCAATGCTGTCAGTGACATTTTGGGTGCTATGGGAACCTCTCTCATGGCAAGCAACACACCATTTGTTCCAGATGTGGCTGGACTCCAGCCTGACCTAGATGATGTAGCATCTTACTCAACTGAAGCTTTTGAGGCATATCCAGGGATCTGGATGTCATCCCAGAAGATAAAATATATTGCCTCAGGCCTCATGGACACTGTCTGTGATGACCTACTGGATGAGGATGGTTTCCTCAGACGGAGCGCTGGTGCAATATCCTCACAGGAAGACCTTGATCTTCAGAAGTTAATTACTTCAAAACCAGCATCCCCAGTCAATTGCATGCCTGTCAAAAGATGCCTGTCAATGTCCTACCTTGATGCTTTGAAGAATCCTGAAGACATTGAAAATGCTACTCACCTCAGTAGAAGCCTTGACTCTCTCTCCGTAATTGGTGTGCCTACTTCAACCTCAAAGGAAGTTTCATACGGCACAGAATTGAAACTGACACAGTTGCAAAAAGATGTTTCTGCATCATCCTCACTTTATGCCATGAGCAACTGTTGGAGCTCATTGGAGTTTACCTCCACTGGATCTGATATCCCTATCGACGAAGAGGCCCAAAGGATTTCCTCCACAGACGAAGAAGACAGTCTGTCCAAATCCCTCCTGACCTCTTCCAAATCAGTCTTCAATGTCTCTGGCCTCGTTCCTACTCCTCCAGAGGGAAAGCCAAAGGTGAGGCTGCCATGGCGCCCAGTGCTTCGCCGTAGAAAGGTTCCAGAGCAGCCCCCCAACAAGATGCACATTTACACAGTTCACAGGGATGCTTTTCATTTCCCAACTGAGACAATGCAATCGACCAGTCCATCATCACCCGAGGGAGACTTCTCAACTCCAGAGTCCCAGAGGCCAAGAGCGGTGGACAGCTCAGACAAGGAGTCTATCTTTAATATAGACTCATCCAAAAGACTCGTCGCAGAGATAATGCTGTCTGTTCGGGAGGACGTTGTTGAGGCAAAGCAGAGCGAATTGGCCGCAAATCTGGCTGTGCTGTCATCTGACAATGTGATGCTCAACACTTTGGCTCAGAGTGGGACACCCCGCACCGATTCCTGAACTGCCTCCAACACCTCTCCTCACAGCGAGAGTGATAACTGAAGAGAGATTCACATGTTTACTTGGACATACATGATAGAAGCATTTGCTTACATTATTTTGAATCGCATTGAGCTATTAAAGAATGCATTTATTTTCTAAAAAAGACAAAAGGATTTATTTACACTATGTAGTTTTTCTTAGATGTTAGTGTTAAGTTAGGAACATTAAATTGAAAGTTAGGAGAGAGTAATTATACATCTTTGCTCTGAATGGTGACATTGTTTAAACAGTCTCACAATTTGACAATAAAATAttaatacactttttttttttacactgtgaCTTTTATGGTTctgaagggaggagaggacaaaGCTGGATGAATTTAGGAGTCACAAGCGCCCCAGTAATCCTTATTAACTTTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106572597 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616717.2 True 4034 mRNA 0.46 3 64074992 64081293

Neighbor

gene id symbol gene type direction distance location
LOC118966089 LOC106572600 coding downstream 7070 64063536 ~ 64067922 (-)
LOC118966088 LOC106572600 coding downstream 18536 64052070 ~ 64056456 (-)
LOC110532643 LOC106572600 coding downstream 30327 64041228 ~ 64044665 (-)
LOC110532641 LOC108255233 coding downstream 42234 64030917 ~ 64032758 (-)
LOC110532640 LOC106572604 coding downstream 44185 64027016 ~ 64030807 (-)
LOC110532649 bi1 coding upstream 85431 64166724 ~ 64175942 (-)
LOC110532650 LOC106572594 coding upstream 94845 64176138 ~ 64191907 (-)
LOC110531235 NA coding upstream 118137 64199430 ~ 64211236 (-)
LOC110532651 LOC106572593 coding upstream 135767 64217060 ~ 64247646 (-)
LOC110532656 gp182 coding upstream 232784 64314077 ~ 64317172 (-)
G830543 LOC108255233 non-coding downstream 35104 64027907 ~ 64041211 (-)
G830544 NA non-coding downstream 48006 64024605 ~ 64026986 (-)
G830602 NA non-coding downstream 109685 63965043 ~ 63965307 (-)
G830601 NA non-coding downstream 110137 63964619 ~ 63964855 (-)
G830597 NA non-coding downstream 117595 63957140 ~ 63957397 (-)
G830633 NA non-coding upstream 3657 64084950 ~ 64085180 (-)
G830637 NA non-coding upstream 6897 64088190 ~ 64088428 (-)
G830638 LOC106572599 non-coding upstream 7303 64088596 ~ 64094275 (-)
G830639 NA non-coding upstream 13797 64095090 ~ 64096490 (-)
G830642 NA non-coding upstream 29282 64110575 ~ 64111131 (-)
LOC110532632 LOC106572615 other downstream 175688 63862848 ~ 63899379 (-)
G829644 NA other downstream 1282496 62790588 ~ 62792496 (-)
tmem269 pss other downstream 2357027 61683104 ~ 61717981 (-)
G827668 NA other downstream 3002627 61028372 ~ 61072365 (-)
LOC110532670 hoxc8ab other upstream 630379 64710256 ~ 64713744 (-)
G831986 NA other upstream 1289560 65370853 ~ 65413071 (-)
G832008 NA other upstream 1333202 65414495 ~ 65418096 (-)
G832392 LOC106572669 other upstream 1695290 65776583 ~ 65781798 (-)
G832401 kmt2d other upstream 1712564 65793857 ~ 65795190 (-)

Expression

LOC110532644(LOC106572597) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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LOC110532644(LOC106572597) Expression in each Bioproject

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LOC110532644(LOC106572597) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network