Item | Value |
---|---|
gene id | LOC110532659 |
gene name | copz1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048573.1 |
NCBI id | CM023227.2 |
chromosome length | 79455637 |
location | 64466967 ~ 64471290 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
copz1 | Acts upstream of or within lens development in camera-type eye. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ1 (COPI coat complex subunit zeta 1). |
description |
---|
coatomer subunit zeta-1-like isoform X1 |
id | name | namespace |
---|---|---|
GO:0006886 | intracellular protein transport | biological_process |
GO:0002088 | lens development in camera-type eye | biological_process |
GO:0016192 | vesicle-mediated transport | biological_process |
GO:0030117 | membrane coat | cellular_component |
id | description |
---|---|
K20472 | COPZ, RET3; coatomer subunit zeta |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021616745.2 | False | 1322 | mRNA | 0.42 | 9 | 64466967 | 64470961 |
XM_021616741.2 | False | 1350 | mRNA | 0.42 | 9 | 64466967 | 64470968 |
XM_021616747.2 | False | 1248 | mRNA | 0.43 | 9 | 64466967 | 64471186 |
XM_021616742.2 | False | 1276 | mRNA | 0.43 | 9 | 64466967 | 64471193 |
XM_021616739.2 | False | 1286 | mRNA | 0.43 | 9 | 64466967 | 64471194 |
XM_021616744.2 | False | 1261 | mRNA | 0.44 | 10 | 64466967 | 64471287 |
XM_021616743.2 | False | 1275 | mRNA | 0.44 | 10 | 64466967 | 64471289 |
XM_021616740.2 | True | 1285 | mRNA | 0.44 | 10 | 64466967 | 64471290 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110532657 | lima1 | coding | downstream | 28254 | 64424821 ~ 64438713 (-) |
igfbp6 | igfbp6 | coding | downstream | 103686 | 64358827 ~ 64363281 (-) |
LOC110532655 | LOC106572589 | coding | downstream | 111606 | 64337276 ~ 64355361 (-) |
LOC118966090 | LOC106572589 | coding | downstream | 132130 | 64324158 ~ 64334837 (-) |
LOC110532656 | gp182 | coding | downstream | 149795 | 64314077 ~ 64317172 (-) |
LOC110532662 | LOC106572585 | coding | upstream | 18402 | 64489692 ~ 64494639 (-) |
LOC110532666 | hoxc1ab | coding | upstream | 126378 | 64597668 ~ 64603966 (-) |
LOC110532667 | hoxc10ab | coding | upstream | 166307 | 64637597 ~ 64734159 (-) |
LOC110532671 | hoxc5ab | coding | upstream | 166336 | 64637626 ~ 64691173 (-) |
LOC110532668 | hoxc4ab | coding | upstream | 190996 | 64662286 ~ 64666305 (-) |
G831083 | NA | non-coding | downstream | 6642 | 64459105 ~ 64460325 (-) |
G831110 | NA | non-coding | downstream | 55078 | 64410939 ~ 64411889 (-) |
G831051 | LOC106572590 | non-coding | downstream | 154044 | 64311673 ~ 64312923 (-) |
G831050 | LOC106572590 | non-coding | downstream | 156122 | 64309286 ~ 64310845 (-) |
G831038 | LOC106572591 | non-coding | downstream | 168770 | 64280608 ~ 64298197 (-) |
G831143 | NA | non-coding | upstream | 37313 | 64508603 ~ 64509311 (-) |
G831149 | NA | non-coding | upstream | 47766 | 64519056 ~ 64519315 (-) |
G831157 | NA | non-coding | upstream | 82818 | 64554108 ~ 64555189 (-) |
G831160 | NA | non-coding | upstream | 89002 | 64560292 ~ 64560694 (-) |
G831168 | NA | non-coding | upstream | 116432 | 64587722 ~ 64606356 (-) |
G830543 | LOC108255233 | other | downstream | 425756 | 64027907 ~ 64041211 (-) |
LOC110532632 | LOC106572615 | other | downstream | 567663 | 63862848 ~ 63899379 (-) |
G829644 | NA | other | downstream | 1674471 | 62790588 ~ 62792496 (-) |
tmem269 | pss | other | downstream | 2749002 | 61683104 ~ 61717981 (-) |
G827668 | NA | other | downstream | 3394602 | 61028372 ~ 61072365 (-) |
LOC110532670 | hoxc8ab | other | upstream | 240382 | 64710256 ~ 64713744 (-) |
G831986 | NA | other | upstream | 899563 | 65370853 ~ 65413071 (-) |
G832008 | NA | other | upstream | 943205 | 65414495 ~ 65418096 (-) |
G832392 | LOC106572669 | other | upstream | 1305293 | 65776583 ~ 65781798 (-) |
G832401 | kmt2d | other | upstream | 1322567 | 65793857 ~ 65795190 (-) |