LOC110532663 (LOC106572586)


Basic Information

Item Value
gene id LOC110532663
gene name LOC106572586
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64494767 ~ 64500800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616751.2
TGTGTACGTCAAAATACGTCACTTCAATGGAATTGAATTTGATGTTCTGGCAAGTCTGTATAAATAAACGTAATATAGTATTTGAGAAAGCTTGCCAAATGATCCTGAAATGTCTGCATATTTCTTTAGTGGATATCTCTAGCCATAACATTTACTTATTAAATCACAGTTATTTAGTTTGACGCCGTCCTTTTCGTGGGCGTGCACGGTCTGCTATTGTGCTTTTGGCGCGCAAGCTAGTCGTGTGGGGAGGGGGAACAAAAAGCCCAGAAAAAGCATCCAGCCAACTGCTGAAGCTAACCGTGTGGTGGAAGAAAGCAATTTGAGTTTCCAATAAATTCATCCGAATTACAAAAGTTCTCAAAAGTTGAGACGTGCCACTTAACTCACCCTAGGTACTGTAACCTAGCTAGCCATGGGAAAGAAGACTCGTGAAAATGATGATGGTGCCTCAGGCTCATCTTCAGAAGAGGAAGAATTCATTGTGGAGAAGGTGCTGGACAGGAGGACGGTGAAGGGCCGAGTTGAATTCTTCCTGAAGTGGAAAGGTTATTCAGAAAAGCACAACACATGGGAGCCAGAGAAGAATCTTGGCTGCCCTGAGCTCATTGCTGGGTTCATGAAGACCTACAAGAAGCCTAGCAGTAGTGGTGCAACCCCCAGCAGTGGAGGATCCAAGTCCAGCGCGGGATCATCAGGCCGTAGCAAGGAAGGCAGCAGCAAGAGGAGGAActctgatgatgatgacgatgaggaGGGGAGCAGCAACAAGCCCAAGCGGAAAAAAGAGGATGATGTCCTGATTGCGAGAGGCTTTGAGAGGGGTCTGGTACCGGAGAAGATTATTGGAGCCACAGACTCCTGTGGAGATCTCATGTTCCTCATGAAGTGGAAGGACTCTGACGAGGCAGATCTGGTGCTAGCCAAGGAGGCCAATCACAAGTGCCCGCAGATCGTCATAGCCTTCTATGAGGAGCGCCTCACCTGGCACGAAGATGGGGACAAGAAAGAGAAGGGTGCTGTAAGCATGTGAGCGGGATGTCTTGCCACGGGAACGGTCACTGACCTCTTGCCCCCGACTCTGCAGGGACATCCTGGAGACTCGTATAGCCAGcaccaaatcacaccctattcctcCCCCTTGGCCTTAACCCTTTGATGTTAACTTGTTTGAATAGTCTGCATAGGTATAATCAGTGGTGGTAAATATTCCACCGTATTGATCTGCAAACATTGAAGGGTTAGGGCAAAATAGAGGGTTGGGGAGGGATTTGGTACCGACTGACAACCCCCACCCCATTGGTAATGACATAACAAAAACCACACAAACCAACGATGGAGAACACTGCCCACTTTCTCATGATACCTCCCTCCATGCCCCAATGTACAGGCTAATATCCCTGAATAACTAACAGTTCAACCTTGCCATTTTACATAGAAACTGAGAAGGATGCAGGAAGATTGTGGTGCGCTCGCTACTGGGAAGggcttgtttttttgttttgtttttcaaccTCATGCTTTATTCTCTCACTTTGTACTTTTtgtgcagtatttttttttgATTTTTACGGCATATAATTGTCAGGAAGACCGTAGATTCTGTGGTACCCTGTCTAGGTACAGGCAGCCATATTAAGGTGACTTGAAGGTAGTTGTCTTCACTGAGACGTTAAAATGGGCAGTCTATCATAGCATGGTCCAGGGACCTGTATTCAGTGTCTGACTGCTGATCCAGTATCTGGTCCATATATTAATTGATTTAACAGGGCAACTGATCCTCGATCAGACAATCTGTGGAAACGTTGAATGTGGGCAACGGCCATGTTTGACACTGGGAAGCCAACAGCCTTGCAAGTCTTAAACCTTAGTTAGTTATGCAGTAGAAACAATAGAATTGTATTATCCGATTTCCCCCTATTGGGCCACCTTGGTCAGAAAACATCTTCTAGACTTTTTCTTCAGTAGTTTTAGTTCAACTTTGATGTTCTAAGGTAAATATGGCCCCTTTATGTAAAACTCCTTCCATGGTTTTTCTCTCAAATTTGCTAGTAGTGTGGCTGGATTGTACGTTTTGTTTTAATCATCGTCATGTTAATATTTTAGCTCTTTTGTCCCAATGTTTTATTTTCTGTAGCTATGCCCTGTCAACTATGTAGCTTTGATTCCATTGCTGAGATCATGAATATATTTTAGAGTAGCTGCTTATTCCCAACTTGGAATTGGATTATTTTGATTACCTTTTAATCAGTGTCCTCACATCAAGCACAAGTAAGAAAATATTACAGATGAACTAGCCTCTGCTGAGTGCCCTAACAATTGGATGTATCAGTTTTCATGGAAAGGTCCCATGATCTGACTGGTGACACTCAATCTTAACTCCACCTCCACATTTATTGGATTGGTTGAACCGTGCAGAAAACCTCCCCCTGTCAGTTTCTTCCTCTGGTCAAGACCAGTATGTCGGGGCTCTAGTTTCAGGCCATTATTTTATGCCTGCTACAGATGAACAGAAGGGTCACTTCAAAAGTTGTGCCCGGTGTTTCAAGCCATTGTTTGCAAATGTGAATGACCACTTGATTGTTGAGTGTATATACACAACATTATCACAGTAATGCTGAACTGTAACCATTCCTATGATGAGAGGTTGGACAATCCACATGCTCTGCAGTAATGTGAAACAAAACCAGCATGGATTTGATCAAGGTACACCACCCTGTGGCTAAATGTCTCAGCGAAAGTGCTCTTGTCAGTGCGCTGTATGGGAGACTGGAACAAGGCAGACAGTGTTATTTCATGGGATACTTGTTGCTTTAGTCTAACATTTTAAGATCATGTCAGTACTTTGGATTAAATGTTAAGTGTATTTTTTCCACTTGCTATCATTAAGTTGATTTAAAGGAGTTGTAGGAAGATTTGACCCCTTACACCTTGTTTCCCATATCAACATCCACATATGTAGTGACAAACTGGAAGGTCATGTAGTCCCTCAAGAGGCAAATATCCCAGTTCATTTGGTGTAGCCAATATATTGCTGAGTTGATGGACAGAGTCCTGTTCATCGGCTGTTCTCTAGATTTACTCGTACTCGATTTGTTCCCCTCTCTTGCAGTGAattctttgttttttttgtgaattCTGAGTTGTCTAGCCACTGTAGTCATAGAAACAACAgttttttgtaaatgacatcctTCCGTTGAGAAACATCCCTATTCTGGACACGTGTAACAGGGTTGTACATGTTTCATGTCAttagatatttttttttgtgtgtcctTGAATAAAAACCTGTTAACTTTTATTTTCTCACACCACTCCTTTACTTTCAAAGATTTCATTTGAaggcatacatttttttttattgtgtttttaAATGTGCAGCATTTgtattttaccatttttaatgCTCTGCaaatttgttttgtcttgtattAAATTGTAGTAAACTGTTTCCAACATTTTAAA
>XM_021616752.2
TCAAAATACGTCACTTCAATGGAATTGAATTTGATGTTCTGGCAAGTCTGTATAAATAAACGTAATATAGTATTTGAGAAAGCTTGCCAAATGATCCTGAAATGTCTGCATATTTCTTTAGTGGATATCTCTAGCCATAACATTTACTTATTAAATCACAGTTATTTAGTTTGACGCCGTCCTTTTCGTGGGCGTGCACGGTCTGCTATTGTGCTTTTGGCGCGCAAGCTAGTCGTGTGGGGAGGGGGAACAAAAAGCCCAGAAAAAGCATCCAGCCAACTGCTGAAGCTAACCGTGTGGTGGAAGAAAGCAATTTGAGTTTCCAATAAATTCATCCGAATTACAAAAGTACTGTAACCTAGCTAGCCATGGGAAAGAAGACTCGTGAAAATGATGATGGTGCCTCAGGCTCATCTTCAGAAGAGGAAGAATTCATTGTGGAGAAGGTGCTGGACAGGAGGACGGTGAAGGGCCGAGTTGAATTCTTCCTGAAGTGGAAAGGTTATTCAGAAAAGCACAACACATGGGAGCCAGAGAAGAATCTTGGCTGCCCTGAGCTCATTGCTGGGTTCATGAAGACCTACAAGAAGCCTAGCAGTAGTGGTGCAACCCCCAGCAGTGGAGGATCCAAGTCCAGCGCGGGATCATCAGGCCGTAGCAAGGAAGGCAGCAGCAAGAGGAGGAActctgatgatgatgacgatgaggaGGGGAGCAGCAACAAGCCCAAGCGGAAAAAAGAGGATGATGTCCTGATTGCGAGAGGCTTTGAGAGGGGTCTGGTACCGGAGAAGATTATTGGAGCCACAGACTCCTGTGGAGATCTCATGTTCCTCATGAAGTGGAAGGACTCTGACGAGGCAGATCTGGTGCTAGCCAAGGAGGCCAATCACAAGTGCCCGCAGATCGTCATAGCCTTCTATGAGGAGCGCCTCACCTGGCACGAAGATGGGGACAAGAAAGAGAAGGGTGCTGTAAGCATGTGAGCGGGATGTCTTGCCACGGGAACGGTCACTGACCTCTTGCCCCCGACTCTGCAGGGACATCCTGGAGACTCGTATAGCCAGcaccaaatcacaccctattcctcCCCCTTGGCCTTAACCCTTTGATGTTAACTTGTTTGAATAGTCTGCATAGGTATAATCAGTGGTGGTAAATATTCCACCGTATTGATCTGCAAACATTGAAGGGTTAGGGCAAAATAGAGGGTTGGGGAGGGATTTGGTACCGACTGACAACCCCCACCCCATTGGTAATGACATAACAAAAACCACACAAACCAACGATGGA

Function

NR:

description
chromobox protein homolog 5-like

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616751.2 False 3468 mRNA 0.42 5 64494767 64500800
XM_021616752.2 True 1293 mRNA 0.48 5 64494775 64498672

Neighbor

gene id symbol gene type direction distance location
LOC110532661 LOC106572584 coding upstream 4563 64482555 ~ 64490204 (+)
LOC110516183 LOC106572588 coding upstream 41297 64443372 ~ 64453470 (+)
LOC110532652 LOC106572590 coding upstream 181793 64308634 ~ 64312974 (+)
LOC110532654 LOC106572591 coding upstream 186204 64280572 ~ 64308563 (+)
LOC110532648 LOC106572596 coding upstream 328185 64134688 ~ 64166582 (+)
LOC110532676 LOC106572538 coding downstream 346945 64847745 ~ 64869558 (+)
LOC110532678 LOC106572653 coding downstream 513077 65013877 ~ 65041263 (+)
LOC110532679 LOC106572652 coding downstream 551804 65052604 ~ 65061874 (+)
LOC110532681 LOC106572651 coding downstream 563673 65064473 ~ 65073406 (+)
LOC110532682 LOC106572650 coding downstream 576645 65077445 ~ 65135899 (+)
G830777 NA non-coding upstream 131378 64358842 ~ 64363389 (+)
G830764 NA non-coding upstream 150042 64336179 ~ 64344725 (+)
G830725 NA non-coding upstream 240486 64254051 ~ 64254281 (+)
G830717 NA non-coding upstream 246287 64248274 ~ 64248480 (+)
G830529 NA non-coding upstream 295681 64198880 ~ 64199086 (+)
G830877 NA non-coding downstream 87130 64587930 ~ 64589969 (+)
G830889 NA non-coding downstream 108413 64609213 ~ 64612651 (+)
G830892 NA non-coding downstream 124534 64625334 ~ 64626227 (+)
G830894 NA non-coding downstream 127945 64628745 ~ 64630568 (+)
G830918 NA non-coding downstream 157913 64658713 ~ 64658965 (+)
G830755 gp182 other upstream 178111 64314078 ~ 64316656 (+)
LOC110532619 LOC106572645 other upstream 896999 63565578 ~ 63601970 (+)
LOC110532602 NA other upstream 1866925 62623239 ~ 62627845 (+)
G828274 NA other upstream 2304161 62189182 ~ 62190606 (+)
G827039 NA other upstream 3243529 61212461 ~ 61251238 (+)
G830923 NA other downstream 164948 64665748 ~ 64666311 (+)
G831299 LOC100653477 other downstream 378907 64879707 ~ 64883543 (+)
LOC110531237 LOC106567057 other downstream 865491 65186569 ~ 65405501 (+)
G831810 NA other downstream 1013593 65514393 ~ 65514985 (+)
G831865 NA other downstream 1122138 65622938 ~ 65623316 (+)

Expression


Co-expression Network