LOC110532670 (hoxc8ab)


Basic Information

Item Value
gene id LOC110532670
gene name hoxc8ab
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64710256 ~ 64713744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616760.2
agaaacgCTCGTGACTCTGTCCGCGGAGCAAGCCAGCTTGAACCTCAATGCATCCAAAGCACACACCATGAGCCGGATTTGAGGCTGAAAAATAGAAGATActggagatagtgagagagactcGAAGAGAAGAGTGTTGGAGCGCAAGAGAGCTGCCTGAGACTGTCTAAGGGGGCAGCGTTTCTCCATCTAGTTCCGGTTTGTCAGTCAGCGCTGTGTGCGACTGGGAACCTAAACAAAAGGCTGCCACAATCCAAAAGGGGATATTCTACAACGAAGAAACCTCGTCTGTGGTTTAATGCAAACTAAACAATGAGCTCATATTTTGTTAACCCTCTTTTCTCCAAATACAAAGGCTGTGAATCACTGGAGCCAACTTACTACGACTGCAGGTTCCCACAAAGCGTTGCCCGTAGCCACACGCTGGTCTACGGACCCGGGGCAGCTGCATCGGGCTTTCAACAGCCGTCCCATCATGTCCAGGATTTTTTCCACCATGGGACCACGGGGATCTCCAACCCTGCATACCAACAGAACCCTTGCGCACTGGCTTGCCATGGAGACGCAACGAAATTTTATGGATATGAAGCTCTTCCGAGACAACCGCTTTATGGTACCCAGCAAGAGCCAAGCCTCGCGCAATACCCAGACTGTAAATCGTCTAACGGCTCTAACCCCGGAGAAGGACAAGGCCATTTAAATCAGAACTCGTCTCCCACTCTTATGTTTCCTTGGATGAGACCCCACGCACCAGGGAGGCGAAATGGAAGACAAACCTACAGTCGCTACCAAACTCTGGAGCTGGAGAAGGAGTTTCTCTTCAATCCTTATCTTACACGCAAGCGGCGGATCGAGGTGTCCCATGCCCTGAGTCTCACAGAGAGGCAGGTCAAGATATGGTTTCAAAATCGACGAATGAAGTGGAAAAAAGAAAACAACAAAGACAAGTTTccgggacagagaggagaggcggATGCTGATGCCGAGCCTGAGGAGGAGGTCAACGAGGACGGTGacggggaagagggggaagagaaagaaGTGGAAGAGAAAAATAAAGTTGATCCCAAGGAGTGATTTTATGGTCATTTATGGTTTAATGGCAGAAAAAGAGGAAAAAGAGTATAGTagacgggagaggagagaagaaggcaGAGAGCGTTAACTTTATGGACACGGTTTTATTAGTCAACAAGGGAAAGGGAAAAAAGATCTTACAGATATTGCTGGCATAATCATTTATCTATTTCTCCCTCATCACGATGCTTTAGGGATACAAATTAGTTATTTTGTCGTTTTGGACGTTTCCTTACAATATACATTTGCCAATATTACATCTGGGAAAGGTAATGGTAGCACATCGGTGATCTTTGTATGGGTTAACTTTAAACGCATGTTTAATTAACAGAGTAGGCTAGGCTACTTTTAGAATATGTTTTGTTTGGTTTATCTGACAAAAGCATAACCAAACAAATGCATATAGGAAGACAACGCAAGGTCCAACAAGCCTTGGCCAATGCCAATCTAATCTTGTAAATACACAACACATTCACAATAGACATATTTGCGAATATGTGATTTAAAATCGTAAGCAAAACGTAACTAAAAACAATGTTTAATGTCATGACAGCAGTGTGACTTCTGAGGGATATAACATTGATTAGCAGCAGGcgtatatataaaacacatgttttaattgtttttattatACTTCATTGTCATTTGTGGTGAATGGCCAAGACAAGAATATGTGGTTCTTACTTCATATATAGTTTTGTTAGAATTACCAGGGACATGCAATCGTTTAAAATCGTTAAGACGCTACCTAAAACAGGGAAAATTGCAATAGAGATTTCTAAATAGAGATTTCAAATGATATTGTTTTTATAGTGTTATATCAACGTTATATGATTAAATTATATTTCATTTGCCCAATATATACCTATGCTTGTTTAAGACAATTTGTGAGTCTTAGGAAGACACAGTTAGCTCAAAGCCAAGTCAACGATTTGTCGTTCAGATTGTACCACGGCACTACCTACTAAAACAGAGCTTTGCCTTTTACTTCATTTTGTATTCAATAATAATGGCACTGCTATGTTTAGATGAAAATCTATATTTTCCCCAACAACTAAAACTGCCTATAGAAAACGCACATGACTGTGTGTGATAATAATACCTTCTACAATTGCAAGGGTTTTAAGAAGTAAGGCGTGTTCTTTTAATGTGCTGGTGATAATAGAGTAGTTTTTTTGCACTGAATATAATCTTTATGTACGTCTTGTTATATTCTTGATGTTAATAGGCTCGTTTTCTGGTGTTTCCCATGTGAACGACGGAATTGTGTGTCCCCGCCATTGTTTTTTGACATAAAAAGATGAATAAACAAGATGGCTCACAA
>XM_021616762.2
agaaacgCTCGTGACTCTGTCCGCGGAGCAAGCCAGCTTGAACCTCAATGCATCCAAAGCACACACCATGAGCCGGATTTGAGGCTGAAAAATAGAAGATActggagatagtgagagagactcGAAGAGAAGAGTGTTGGAGCGCAAGAGAGCTGCCTGAGACTGTCTAAGGGGGCAGCGTTTCTCCATCTAGTTCCGGTTTGTCAGTCAGCGCTGTGTGCGACTGGGAACCTAAACAAAAGGCTGCCACAATCCAAAAGGGGATATTCTACAACGAAGAAACCTCGTCTGTGGTTTAATGCAAACTAAACAATGAGCTCATATTTTGTTAACCCTCTTTTCTCCAAATACAAAGGCTGTGAATCACTGGAGCCAACTTACTACGACTGCAGGTTCCCACAAAGCGTTGCCCGTAGCCACACGCTGGTCTACGGACCCGGGGCAGCTGCATCGGGCTTTCAACAGCCGTCCCATCATGTCCAGGATTTTTTCCACCATGGGACCACGGGGATCTCCAACCCTGCATACCAACAGAACCCTTGCGCACTGGCTTGCCATGGAGACGCAACGAAATTTTATGGATATGAAGCTCTTCCGAGACAACCGCTTTATGGTACCCAGCAAGAGCCAAGCCTCGCGCAATACCCAGACTGTAAATCGTCTAACGGCTCTAACCCCGGAGAAGGACAAGGCCATTTAAATCAGAACTCGTCTCCCACTCTTATGTTTCCTTGGATGAGACCCCACGGGAGGCGAAATGGAAGACAAACCTACAGTCGCTACCAAACTCTGGAGCTGGAGAAGGAGTTTCTCTTCAATCCTTATCTTACACGCAAGCGGCGGATCGAGGTGTCCCATGCCCTGAGTCTCACAGAGAGGCAGGTCAAGATATGGTTTCAAAATCGACGAATGAAGTGGAAAAAAGAAAACAACAAAGACAAGTTTccgggacagagaggagaggcggATGCTGATGCCGAGCCTGAGGAGGAGGTCAACGAGGACGGTGacggggaagagggggaagagaaagaaGTGGAAGAGAAAAATAAAGTTGATCCCAAGGAGTGATTTTATGGTCATTTATGGTTTAATGGCAGAAAAAGAGGAAAAAGAGTATAGTagacgggagaggagagaagaaggcaGAGAGCGTTAACTTTATGGACACGGTTTTATTAGTCAACAAGGGAAAGGGAAAAAAGATCTTACAGATATTGCTGGCATAATCATTTATCTATTTCTCCCTCATCACGATGCTTTAGGGATACAAATTAGTTATTTTGTCGTTTTGGACGTTTCCTTACAATATACATTTGCCAATATTACATCTGGGAAAGGTAATGGTAGCACATCGGTGATCTTTGTATGGGTTAACTTTAAACGCATGTTTAATTAACAGAGTAGGCTAGGCTACTTTTAGAATATGTTTTGTTTGGTTTATCTGACAAAAGCATAACCAAACAAATGCATATAGGAAGACAACGCAAGGTCCAACAAGCCTTGGCCAATGCCAATCTAATCTTGTAAATACACAACACATTCACAATAGACATATTTGCGAATATGTGATTTAAAATCGTAAGCAAAACGTAACTAAAAACAATGTTTAATGTCATGACAGCAGTGTGACTTCTGAGGGATATAACATTGATTAGCAGCAGGcgtatatataaaacacatgttttaattgtttttattatACTTCATTGTCATTTGTGGTGAATGGCCAAGACAAGAATATGTGGTTCTTACTTCATATATAGTTTTGTTAGAATTACCAGGGACATGCAATCGTTTAAAATCGTTAAGACGCTACCTAAAACAGGGAAAATTGCAATAGAGATTTCTAAATAGAGATTTCAAATGATATTGTTTTTATAGTGTTATATCAACGTTATATGATTAAATTATATTTCATTTGCCCAATATATACCTATGCTTGTTTAAGACAATTTGTGAGTCTTAGGAAGACACAGTTAGCTCAAAGCCAAGTCAACGATTTGTCGTTCAGATTGTACCACGGCACTACCTACTAAAACAGAGCTTTGCCTTTTACTTCATTTTGTATTCAATAATAATGGCACTGCTATGTTTAGATGAAAATCTATATTTTCCCCAACAACTAAAACTGCCTATAGAAAACGCACATGACTGTGTGTGATAATAATACCTTCTACAATTGCAAGGGTTTTAAGAAGTAAGGCGTGTTCTTTTAATGTGCTGGTGATAATAGAGTAGTTTTTTTGCACTGAATATAATCTTTATGTACGTCTTGTTATATTCTTGATGTTAATAGGCTCGTTTTCTGGTGTTTCCCATGTGAACGACGGAATTGTGTGTCCCCGCCATTGTTTTTTGACATAAAAAGATGAATAAACAAGATGGCTCACAA
>TU945127
GGATTTGAGGCTGAAAAATAGAAGATActggagatagtgagagagactcGAAGAGAAGAGTGTTGGAGCGCAAGAGAGCTGCCTGAGACTGTCTAAGGGGGCAGCGTTTCTCCATCTAGTTCCGGTTTGTCAGTCAGCGCTGTGTGCGACTGGGAACCTAAACAAAAGGCTGCCACAATCCAAAAGGGGATATTCTACAACGAAGAAACCTCGTCTGTGGTTTAATGCAAACTAAACAATGAGCTCATATTTTGTTAACCCTCTTTTCTCCAAATACAAAGGCTGTGAATCACTGGAGCCAACTTACTACGACTGCAGGTTCCCACAAAGCGTTGCCCGTAGCCACACGCTGGTCTACGGACCCGGGGCAGCTGCATCGGGCTTTCAACAGCCGTCCCATCATGTCCAGGATTTTTTCCACCATGGGACCACGGGGATCTCCAACCCTGCATACCAACAGAACCCTTGCGCACTGGCTTGCCATGGAGACGCAACGAAATTTTATGGATATGAAGCTCTTCCGAGACAACCGCTTTATGGTACCCAGCAAGAGCCAAGCCTCGCGCAATACCCAGACTGTAAATCGTCTAACGGCTCTAACCCCGGAGAAGGACAAGGCCATTTAAATCAGAACTCGTCTCCCACTCTTATGTTTCCTTGGATGAGACCCCACGGGAGGCGAAATGGAAGACAAACCTACAGTCGCTACCAAACTCTGGAGCTGGAGAAGGAGTTTCTCTTCAATCCTTATCTTACACGCAAGCGGCGGATCGAGGTGTCCCATGCCCTGAGTCTCACAGAGAGGCAGGTCAAGATATGGTTTCAAAATCGACGAATGAAGTGGAAAAAAGAAAACAACAAAGACAAGTTTccgggacagagaggagaggcggATGCTGATGCCG

Function

NR:

description
homeobox protein Hox-C8a-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616760.2 False 2401 mRNA 0.41 2 64710256 64713744
XM_021616762.2 False 2395 mRNA 0.41 2 64710256 64713744
TU945127 True 905 TUCP 0.50 2 64711672 64713670

Neighbor

gene id symbol gene type direction distance location
LOC110532672 hoxc6ab coding downstream 14719 64692181 ~ 64695537 (-)
LOC110532671 hoxc5ab coding downstream 19083 64637626 ~ 64691173 (-)
LOC110532668 hoxc4ab coding downstream 43951 64662286 ~ 64666305 (-)
LOC110532666 hoxc1ab coding downstream 106290 64597668 ~ 64603966 (-)
LOC110532662 LOC106572585 coding downstream 215617 64489692 ~ 64494639 (-)
LOC110532669 hoxc9ab coding upstream 2882 64716626 ~ 64720395 (-)
LOC110532674 hoxc11ab coding upstream 27421 64741165 ~ 64744977 (-)
LOC110532675 hoxc12ab coding upstream 42840 64756584 ~ 64760661 (-)
LOC110533032 hoxc13ab coding upstream 54847 64768591 ~ 64772905 (-)
LOC110532677 LOC106567065 coding upstream 165955 64879699 ~ 64985955 (-)
G831225 NA non-coding downstream 27596 64682355 ~ 64682660 (-)
G831224 NA non-coding downstream 28328 64681558 ~ 64681928 (-)
G831221 NA non-coding downstream 30952 64679079 ~ 64679304 (-)
G831220 NA non-coding downstream 31261 64678594 ~ 64678995 (-)
G831207 NA non-coding downstream 54913 64655067 ~ 64655343 (-)
G831231 NA non-coding upstream 25001 64738745 ~ 64739637 (-)
G831238 NA non-coding upstream 36361 64750105 ~ 64750322 (-)
G831239 NA non-coding upstream 36664 64750408 ~ 64750681 (-)
G831258 NA non-coding upstream 66093 64779837 ~ 64780070 (-)
G831364 NA non-coding upstream 97229 64810973 ~ 64811183 (-)
G830543 LOC108255233 other downstream 669045 64027907 ~ 64041211 (-)
LOC110532632 LOC106572615 other downstream 810952 63862848 ~ 63899379 (-)
G829644 NA other downstream 1917760 62790588 ~ 62792496 (-)
tmem269 pss other downstream 2992291 61683104 ~ 61717981 (-)
G827668 NA other downstream 3637891 61028372 ~ 61072365 (-)
G831986 NA other upstream 657109 65370853 ~ 65413071 (-)
G832008 NA other upstream 700751 65414495 ~ 65418096 (-)
G832392 LOC106572669 other upstream 1062839 65776583 ~ 65781798 (-)
G832401 kmt2d other upstream 1080113 65793857 ~ 65795190 (-)
G832461 NA other upstream 1232438 65946182 ~ 65946593 (-)

Expression


Co-expression Network