LOC118966190


Basic Information

Item Value
gene id LOC118966190
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 65166655 ~ 65168430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053456.1
TAATgcagagacatgggaggaatgTGTCTATATATTGAGTTTGAAATAGGATGcgtgttatttggccattggcacAGTTTTATTGCatggaattctaattggtcaaccacaggctagggctgggttataaaCTACATCCTGTTCATTTGTTCTGTGgggagaatcactgaggacaggggaacATGAACATCTGCCATCTACCTCTCAGCATAATATCTTTGATTTATCGTATTTGAATAAACCAATTTTCCTCctcctgatttgctttggggtcagTGTAATAAAAGAATAACATCAGCTGCTAACATTTGGTGTCGTGACCGTGTGAATTGGTCTGAACAACAAGAAAAACCCAACGGTGTGTTGATCCAGAAGAAAGAGTGAAGGCTGAGCACAACCCACCTTGGGAGAGTCAACTCTTAATCTCCTGATTGATGGCAGAAGTGCTGGGTGAGTCTAGACCAATataagtttaaaatatccaaatTAGGTTAAAATATATGCATGGAATAAGTGATAGGTATCTGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAAGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGTTTGAGTCCTCTATATAAGGTTTGAGTCCTCTATATAAGGGTTGAGTCATTTTGATAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGTTTGAGTCCTCTATATAAGGTTTGAGTCCTCTATATAAGGTTTGAGTCCTCTATATAAGGTTTGAGTCCTCTATATAAGGGTTGAGTCATTTTGATAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTAAAATCCAGTGATGTATAAGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAGGGGTTTGAGTCCTCTATATAAGGGTTGAGTCCTTTTGTTAAATCCAGTGATGTATAAGGTTAGAGTCCACTGT

Function

NR:

description
zinc finger protein 585A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053456.1 True 1528 mRNA 0.39 3 65166655 65168430
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110532682 LOC106572650 coding upstream 72510 65077445 ~ 65135899 (+)
LOC110532681 LOC106572651 coding upstream 93249 65064473 ~ 65073406 (+)
LOC110532679 LOC106572652 coding upstream 104781 65052604 ~ 65061874 (+)
LOC110532678 LOC106572653 coding upstream 125392 65013877 ~ 65041263 (+)
LOC110532676 LOC106572538 coding upstream 297097 64847745 ~ 64869558 (+)
LOC110531237 LOC106567057 coding downstream 18139 65186569 ~ 65405501 (+)
LOC110531239 LOC106572674 coding downstream 472195 65640625 ~ 65646547 (+)
LOC110532705 LOC106567051 coding downstream 500923 65669353 ~ 65671483 (+)
LOC118966094 LOC106568803 coding downstream 522886 65691316 ~ 65692849 (+)
LOC110532703 LOC106572667 coding downstream 537998 65706428 ~ 65733828 (+)
G831522 NA non-coding upstream 6965 65140424 ~ 65159690 (+)
G831524 NA non-coding upstream 16064 65143216 ~ 65150591 (+)
G831443 NA non-coding upstream 179238 64987129 ~ 64987417 (+)
G831334 NA non-coding upstream 237780 64928165 ~ 64928875 (+)
G831638 NA non-coding downstream 7924 65176354 ~ 65176590 (+)
G831712 NA non-coding downstream 148558 65316988 ~ 65317638 (+)
G831719 NA non-coding downstream 172969 65341399 ~ 65342295 (+)
G831743 NA non-coding downstream 250593 65419023 ~ 65419316 (+)
G831299 LOC100653477 other upstream 283112 64879707 ~ 64883543 (+)
G830923 NA other upstream 500344 64665748 ~ 64666311 (+)
G830755 gp182 other upstream 849999 64314078 ~ 64316656 (+)
LOC110532619 LOC106572645 other upstream 1568887 63565578 ~ 63601970 (+)
LOC110532602 NA other upstream 2538813 62623239 ~ 62627845 (+)
G831810 NA other downstream 345963 65514393 ~ 65514985 (+)
G831865 NA other downstream 454508 65622938 ~ 65623316 (+)
LOC110532701 LOC106572669 other downstream 629947 65754497 ~ 65801814 (+)

Expression

LOC118966190 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

LOC118966190 Expression in each Bioproject

Bar chart with 13 bars.
LOC118966190 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network