LOC110531238 (LOC106572666)


Basic Information

Item Value
gene id LOC110531238
gene name LOC106572666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 65499480 ~ 65538745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988711.1
ATCCACTTGCTTCTTGCCCGCTAGTGTTTGTCAGTGCGCGCGTGAAGAGCGGTTTATTATTCCTGGCGCTGTTTACCTATTCAATATGTATTTTTAGCTGAACATTTCTAGCAAAACTGTTTATTATCATTTCGTGTCAATAGTGTAAGGCATTGTCAATGGTTCGCAAGTTAAACTTTATTCCGTTGTcgttttatttatttgtgtaaTGTTATTTAATTAAACAACAAGAAGACACTGAACGCGGAACTGCAGAGGTAGCGCCTCCACGGATAAGGATTTTGCGATGCCATCTGTGGATAGAAGTCCGAGTATGGGCACAGGCTCGGGGGCTGCGGACTCGGCATTGCCAGAAGAAATGCAGCCACCCAAACCTCCAGGGCAACATGCTGTAACCGTATTGTGGTCCTTTGGAAAGTTCCTGGCTACACTTTTACCAGTTTATCTGGCCGGATACTTCGGGTTCAGTATCAGCTTGGTTCTATTCGGTCTCATGGTCTACATCGGATGGAAACACAGCAGAAACGAGAAAGTAATGCGTCTGCGGTCAGCTATGTTCGTATTGGAGAATGAGAGAGCATACACCACTGCGAGGGCTTTTATGAGTAAACAGGAATTACCCCCATGGGTCAACTTCCCTGACGTGGAGAAGGTTGAGTGGATGAATCAGATCCTGCAGCAGGCGTGGCCATTCGTGGGTCAGTATCTGGAGAAGTTGCTGGTCGAGACCATTACTCCAGCCATACGTGCATCCAACACCCACCTGCAGAGCCTCAGCTTCACCACAGTCAACCTTGGGGAGAAGGCCATGAAGGTGGTGGGAGTGAAGGCTCACACGGAGCACGATAAGCGGCAGGTCTTACTGGACCTATACATTAGCTATGCAGGTGATGTGGAGATCAATGTGGAAATCAAAAAGTACTTTTGCAAAGCAGGAGTGAAGGGAATACAGctacATGGGAAGTTAAGGGTGATCCTGGAGCCCCTGATTGGGGATGTGCCTCTGGTGGGAGCCATCACCATGTTCTTCATCCGCAGACCTAAGCTGGACATCAACTGGACGGGGCTGACCAACATGCTGGATATCCCTGGACTCAATGCCATGTCGGACACTATGATAATGGATGCCATATCCTCATACCTGGTCCTCCCCAATCGCCTCACTATCCCCCTGGTGGCCGACCTGCACGTTGCGCAGCTCCGCTCCCCTCTCCCACGGgGAGTGGTGCGTATCCACCTGTTGGAAGCTGAGGAGCTGACAGCCAAGGACACGGTCATTAAGGGGATAATAGACGGGAAGTCTGACCCGTACGCTGTGCTGCGTGTGGGCACACAGACCTTCACATCACACACCGTGGACAGCAACCTCAACCCACAGTGGAGAGAGATGTTTgagGTGATTGTCCATGAAGTGCCTGGTCAGGAGTTGGAGGTGGAGGTGTTTGATAAAGACCAGAACCAGGATGACTTCCTGGGCAGggtcaaAATGGATCTAGATGTCGTACACAAGGCCAGAGTTGTAGATGAGTGGTTGAAGCTGAAGGATGTGACATCAGGCAGTGTTCACCTCCGTCTGGAGtggctctctctgctgtcctctgctgACCGACTCAGTGAGGTTATCCAGAGGAACCAGAATATGACCTGTAAGACTGGAGACCCTCCCTCTGCAGCcatcctgtctgtctacctggaCCGTGCTCAGGACCTGCCTAGGAAGAAGGGCAATAAGGACCCCAGCCCCATGGTGCAGCTGTCGGTACAGAACACAACCAAGGAGAGTAGGATCTGttatctgacctctgaccctgtgTGGGAAGATGCCTTCACCTTCTATATCCAGGACCCTCGCAAACAGGAACTTGATATTCATgtgAAGGATGATGACCGGGCTCTGTCTCTGGGCAGTCTGTCCATCCCGCTGACCCGTCTGCTGGCTAGTCCTGACCTCAGCATGGATCAGTGGTTCCAGCTGGACAACTCTGGCCGCATCTATATCAATGCTGTTCTGAGGGTTCTGCATTTAAATGAGGATGCCTCTCTTACCAGTTCCGTATCTCCTCACCTCCCAAGCCCAGGGGCAGGCCACGGAGACGGGGGTACCACGTCAGAGGTAGCCATCGGGGGAGTGGGTAGAGCCCCCAAACCTGAACCCACACGACCCCAACAGACCACCCCTGACTCGGACTTCGCTAGTGAGgGAGTGCTGCGTATCCACCTGGCGGAGGCCAGTAACCTGATAGCCAAGGATAACTTCATAGGGGGCATGGTGAAGGGGAAGAGTGACCCCTACGTCAAGATCAGGGTGGCAGGAGTCACCTTCCGCAGCCACACCATCAAAGAGAACCTGAACCCCTCCTGGAACGAACTCTACGAGATCATCTTAACCCAGCTGCCTGGTCAGGAGATCCAGTTTGAGCTGTTTGATAAAGATCTGGACCAGGATGACTTCTTGGGGAGgTTCAAGTTAAACTTGCAAGACATCATCAGCCCACAGTTCACTGATGAGTGGTACACTTTAAATGATGTGAAGTCAGGTCGGCTTCACCTGGTCATGGAGTGGCTCCCCACGGTCTCAGAGTCTGCCAGACTAAATCAGATCCTGCAGTACCAGGCCCAGCAGCAGTACCAGAACAAGGCAGTGCCGTCGGCTGCTGTGTTGTTTGTGTACCTGGAGAGAGCCCACGGCCTGCCGTTGAAGAAGGATGGAAAGGAGCCAAAAGTCGGGGCAGAGATTTCGCTGAGGGCCATGTCATACAAAACCAAGGTGTGTGAGTGCTCTACGTCTCCTCGGTGGGATGAAGCTTTCCACTTCCTGGTTCGTGACCCTACAGAGGAACTCCTTATAGTGAAGctgtcccACAGCTGTGGCCAGGCCATGGGCACGGTGGTGTTGCCCCTGAGAGAGGTGCTGTCAGAGCAGGGCCTGGTGCTGGACCGATGGCTGAGTCTGGACGGGGCCCTCCCAGAGAGCCAGATTCTACTGAGGGCCACACTCAAGATGTTGAACACCCAGCTGGCAGTGTGTCCTAGTGGTGTGTCCAGTGATACTACtggggagggcagtgaggagagagaccatGTCATCCACAGACGGGACACTGAACCAAACCTGCGACACAGATCACCGCTCTCTCAATTAGGTGGTCAGAGCCCTGGCCAGGTGAAGCTGCAAATTGGCTACTcaacagaggagaacaggctGTACATCACCGTCCTCTCCTGCAGGGGCCTGCCAGCTTGTGGGTCTGCTAAGGACAGCTCCGACCCATATGTCTCCTTTATCCTTCTGCCGGACAAGAACAGGACCACCAAGAGAAAGACCATCACCAAGAAGAGAGACCTCAACCCTGAGTTTAACGAGAGGTTTGACTTTGACTTCACTCTGGAGGAGTGCATGCAGAAAAGACTTGACCTGACTGTCAAAAACAACGTATCCTTcatgagcagggagagagagctcaTAGGAAAGTTACAACTAGATCTTGACCAGATAGACCTGCAGAATGGCGACACACAATGGTACGATTTAGTAGAGGAGACGAGATGAGAGGATGGCCTCACTTTCCTGCAGTGCAATGTTACTTTTACTGTTGCTTCTTCTGTAtggtttattttatatttttattcaactAATGCGCAATAGGACCACCACTGAAGGTCTTATATTTCCTATCATCCCAACAATACCACAATTTATCTGTAAATTGAATAATTACAAATGATAGATTTGGTTCCTCTTACGTAAGGAAGAATTCCTAAATTCTAGAATTCCTAATTCGAGTCTGAAAGAGTGTTCTTTAGACTCTTTTGTCTGAGTAGATATTTGATATGAAGGCAACTATGTCGCTCCTAAAGGAATCGATCTTGAAAAGCACAAAGTCTTTTATCAACCCCATAGTTCAGAAAATGCAGCAAAAAATAGTGAACATTTTAAAACTTCAGGTATTTTGAGTTTTTCTCATCACTTCAGTTCTTATTTACTACAAAAGTAATTGTTCTCAGAGGGTACTTTCTGACTTTGTTGCATTGTTTCATTTGTTTTATTGCAAAACTATGTCAACCATCTTGAGATAAGTGTTTGAGTGTTAATTGAGACCAAGGTCCAACATACTGAGTAACGGGTACCGGTAGATATGATGATGAGGGTGCTGAAATGTTACCCTGTAGTTTCACAGCGTTTATGGGCCATCATGGATGTTTACACTTTTATTTAATCAATCCTTTTGTTACACTGTTTTTCTGTTTCTAATTTTGCCTTATATATTCCAACACTGGGTAATTTTGCCTTATATATTCCAACACTGGGTAATTTTGCCTTATATATTCCAACACTGGGTCAATTTGCCTTATAAATTCCTACACTGTGTCATTTTGCCATATATATTCCAACACTGGGTCATTTTGCCTTATATATTCCAACACTGGGTCATTTTTGAGAAGATTGAGAATGTTAAAGATCTACTGATTGTGTTCATTCTGTTCCAAATAAAGACGTTTAGTATGTTTTATCAGATTGATTTAAAAGCTGATTTTATAATTCAGGAAATGTGTTATGGAATGACCCAGACGTCACATTTGCCACTGAAAACACACTCTAGCTGTACAGTAATGGACAGTCTGAAGCACTGTGCTTTTATTTGATAAAGAACATATGTGTAGAAGTTAAATATGTAGCTATATCACGAATGTGTATGTTCACAATCCAAGACAGCATTGtgtcatatacagtatgtttgtgtgtgattgAATGTATTTGTATGTGTTTGTTGTGCCAGTAGTGGCCTGAGTTCTGCAATAAGTCAGTCAATCATTCGTTACAAGTTGTGTGTTACAAAACACAAAGTCTTAGACAAAATACACCCAAAGGGCCAGTTTCCTAGATTCCTAGACACATATTAAGTCTAGTCCTGGACTAAGAAGCATGTTCAATGGAGATTTAATGGAGAGTGCTGTTTAGTCCAGGACTGGACTTAATTTGTGAGTCCTGCTCTGAAAGAAGTGAGCAAATTTTGTAGCAAGGAAATGTTCATCCCCCACTGTCATCTCACTGCCAAGGCTTGAAACATGTATTAAAATACTTGAAAATGTTTGTtggcaaataaataaaaaaaagtagaaAACATGTTGTATCAGagcgagagtagagagagacgtATAGTGAGAACAGCTCCTGCGCTTTCAGACATGCATAACAATCGCCACGTCTGTGTCGTCGCACTTTCGTTCAACGTTTGCACTTTCAAAATCCCA

Function

NR:

description
extended synaptotagmin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988711.1 True 5253 mRNA 0.47 31 65499480 65538745

Neighbor

gene id symbol gene type direction distance location
LOC110532685 NA coding downstream 616 65406913 ~ 65498864 (-)
LOC110532684 LOC106567062 coding downstream 368141 65096621 ~ 65131339 (-)
LOC110532677 LOC106567065 coding downstream 513525 64879699 ~ 64985955 (-)
LOC110533032 hoxc13ab coding downstream 726575 64768591 ~ 64772905 (-)
LOC110532675 hoxc12ab coding downstream 738819 64756584 ~ 64760661 (-)
LOC118966093 NA coding upstream 7999 65546704 ~ 65548816 (-)
LOC110532687 LOC106572679 coding upstream 13215 65551960 ~ 65559680 (-)
LOC110532688 LOC106572678 coding upstream 20879 65559624 ~ 65605343 (-)
LOC110532689 LOC102781726 coding upstream 72468 65611213 ~ 65619959 (-)
LOC110532706 LOC106572675 coding upstream 91319 65630064 ~ 65635839 (-)
G832011 NA non-coding downstream 81005 65418242 ~ 65418475 (-)
G832004 NA non-coding downstream 105120 65391560 ~ 65394360 (-)
G831955 NA non-coding downstream 117700 65329086 ~ 65381780 (-)
G831992 NA non-coding downstream 121491 65376000 ~ 65377989 (-)
G831974 NA non-coding downstream 143573 65354022 ~ 65355907 (-)
G832080 NA non-coding upstream 28601 65567346 ~ 65567557 (-)
G832081 NA non-coding upstream 28896 65567641 ~ 65567869 (-)
G832085 NA non-coding upstream 40490 65579235 ~ 65579550 (-)
G832086 NA non-coding upstream 44629 65583374 ~ 65583612 (-)
G832008 NA other downstream 81384 65414495 ~ 65418096 (-)
G831986 NA other downstream 86409 65370853 ~ 65413071 (-)
LOC110532670 hoxc8ab other downstream 785810 64710256 ~ 64713744 (-)
G830543 LOC108255233 other downstream 1458269 64027907 ~ 64041211 (-)
LOC110532632 LOC106572615 other downstream 1600176 63862848 ~ 63899379 (-)
G832392 LOC106572669 other upstream 237838 65776583 ~ 65781798 (-)
G832401 kmt2d other upstream 255112 65793857 ~ 65795190 (-)
G832461 NA other upstream 407437 65946182 ~ 65946593 (-)
G832480 LOC106572660 other upstream 462474 66001219 ~ 66001734 (-)
G832503 NA other upstream 497127 66035872 ~ 66036180 (-)

Expression


Co-expression Network